Wall clock time and date at job start Tue Mar 31 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99832 * 2 1 4 4 H 1.48508 * 109.46977 * 270.00244 * 3 2 1 5 5 H 1.48505 * 109.47443 * 29.99979 * 3 2 1 6 6 H 1.48503 * 109.47285 * 150.00398 * 3 2 1 7 7 C 1.37877 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00103 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47039 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.81397 * 102.99958 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47495 * 180.02562 * 12 11 10 14 14 C 1.38262 * 119.94360 * 89.99437 * 13 12 11 15 15 C 1.38145 * 120.05938 * 180.02562 * 14 13 12 16 16 C 1.38731 * 119.93835 * 0.02562 * 15 14 13 17 17 O 1.35905 * 120.05264 * 180.02562 * 16 15 14 18 18 C 1.42905 * 116.99842 * 180.02562 * 17 16 15 19 19 F 1.39897 * 109.46886 * 299.99632 * 18 17 16 20 20 F 1.39898 * 109.47456 * 59.99851 * 18 17 16 21 21 C 1.38729 * 119.89194 * 0.27526 * 16 15 14 22 22 C 1.38146 * 119.94131 * 359.46928 * 21 16 15 23 23 H 0.97000 * 120.00128 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47215 * 60.00465 * 9 7 2 25 25 H 1.09002 * 109.47344 * 300.00523 * 9 7 2 26 26 H 1.09003 * 109.46808 * 60.00129 * 10 9 7 27 27 H 1.09002 * 109.47409 * 300.00397 * 10 9 7 28 28 H 1.09002 * 109.47140 * 59.99952 * 12 11 10 29 29 H 1.09006 * 109.47367 * 300.00250 * 12 11 10 30 30 H 1.07999 * 119.97562 * 0.03351 * 14 13 12 31 31 H 1.07990 * 120.03151 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.47103 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.03286 * 179.71870 * 21 16 15 34 34 H 1.08005 * 119.97222 * 180.23075 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2330 0.0002 12 6 2.6650 -6.4702 0.0009 13 6 2.0635 -7.8519 0.0010 14 6 1.7883 -8.4849 -1.1971 15 6 1.2364 -9.7513 -1.1998 16 6 0.9578 -10.3877 0.0010 17 8 0.4153 -11.6338 0.0010 18 6 0.1545 -12.2278 1.2743 19 9 1.3508 -12.3387 1.9910 20 9 -0.7439 -11.4268 1.9874 21 6 1.2290 -9.7480 1.2017 22 6 1.7858 -8.4838 1.1990 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 3.2811 -6.3417 0.8909 29 1 3.2813 -6.3426 -0.8891 30 1 2.0051 -7.9889 -2.1316 31 1 1.0213 -10.2451 -2.1358 32 1 -0.2762 -13.2189 1.1315 33 1 1.0088 -10.2395 2.1379 34 1 2.0006 -7.9868 2.1336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190920503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:13 Heat of formation + Delta-G solvation = -138.010150 kcal Electronic energy + Delta-G solvation = -19209.598414 eV Core-core repulsion = 15675.885520 eV Total energy + Delta-G solvation = -3533.712894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.69525 -47.68550 -40.20627 -37.90041 -33.67802 -32.29724 -31.20602 -30.85553 -27.59454 -25.76495 -25.10041 -23.12931 -21.87822 -20.91311 -19.29307 -18.47934 -18.25477 -16.52373 -16.39275 -15.99553 -15.38698 -15.22612 -14.89053 -14.50349 -14.28503 -14.14841 -14.00338 -13.96321 -13.64672 -13.51547 -13.29103 -12.81965 -12.47345 -12.32235 -11.87752 -11.51898 -11.43561 -11.10127 -11.01716 -10.59888 -10.19068 -9.64808 -9.62401 -9.16866 -9.05455 -8.42019 -8.35367 -7.14086 -6.05806 -4.10535 0.98145 1.18857 2.23068 2.31158 3.11657 3.22852 3.29061 3.35602 3.38658 3.64649 3.92366 4.27406 4.41794 4.58508 4.64436 4.70216 4.97258 5.19369 5.23939 5.29609 5.48658 5.62686 5.84726 5.97164 5.99722 6.10820 6.18518 6.36284 6.46694 6.73349 6.86843 7.57009 7.65772 7.90541 8.27625 8.94554 9.53328 11.04976 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.043594 B = 0.002501 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.131210 B =11192.556449 C =11360.662214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.062 4.062 11 S -0.276 6.276 12 C -0.052 4.052 13 C -0.083 4.083 14 C -0.069 4.069 15 C -0.133 4.133 16 C 0.099 3.901 17 O -0.322 6.322 18 C 0.411 3.589 19 F -0.200 7.200 20 F -0.197 7.197 21 C -0.188 4.188 22 C -0.066 4.066 23 H 0.263 0.737 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.181 0.819 33 H 0.133 0.867 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -26.208 0.874 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.209 4.209 11 S -0.046 6.046 12 C -0.199 4.199 13 C -0.084 4.084 14 C -0.089 4.089 15 C -0.152 4.152 16 C 0.055 3.945 17 O -0.240 6.240 18 C 0.321 3.679 19 F -0.182 7.182 20 F -0.179 7.179 21 C -0.207 4.207 22 C -0.085 4.085 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.197 0.803 33 H 0.150 0.850 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.440 -26.320 0.761 26.370 hybrid contribution 1.717 1.226 0.379 2.143 sum 3.157 -25.094 1.140 25.318 Atomic orbital electron populations 1.69976 1.06076 1.26874 1.49993 1.25020 0.94900 0.99315 0.95065 0.86519 0.79750 0.83117 0.78173 1.20544 1.21092 1.19829 1.21100 0.92990 0.90278 1.51758 0.92464 1.18899 0.93406 0.89240 0.98545 1.23713 1.01468 0.92645 1.03113 1.87216 1.16702 1.02690 1.98030 1.22210 0.99187 0.93203 1.05313 1.19334 1.01101 0.94532 0.93421 1.20904 0.96539 0.93308 0.98150 1.20377 1.03369 0.95535 0.95877 1.18855 0.96868 0.83663 0.95086 1.86597 1.77651 1.30153 1.29597 1.23339 0.75885 0.93276 0.75398 1.93098 1.49208 1.96471 1.79384 1.93116 1.68138 1.77187 1.79480 1.21463 1.04888 0.97589 0.96743 1.20868 0.96090 0.93456 0.98117 0.92767 0.95539 0.95551 0.91398 0.91373 0.89601 0.89532 0.84616 0.84757 0.80316 0.84955 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 10 C -0.06 -1.29 5.88 37.16 0.22 -1.07 16 11 S -0.28 -5.15 21.72 -107.50 -2.33 -7.49 16 12 C -0.05 -0.72 6.07 36.01 0.22 -0.50 16 13 C -0.08 -1.08 5.14 -104.60 -0.54 -1.61 16 14 C -0.07 -0.82 9.69 -39.61 -0.38 -1.20 16 15 C -0.13 -1.49 9.99 -39.43 -0.39 -1.88 16 16 C 0.10 1.16 6.48 -39.22 -0.25 0.90 16 17 O -0.32 -3.14 10.43 -19.44 -0.20 -3.35 16 18 C 0.41 2.88 5.98 101.05 0.60 3.48 16 19 F -0.20 -1.71 15.60 2.25 0.04 -1.68 16 20 F -0.20 -1.82 15.57 2.25 0.04 -1.79 16 21 C -0.19 -2.27 8.26 -39.43 -0.33 -2.60 16 22 C -0.07 -0.82 9.69 -39.61 -0.38 -1.21 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 27 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.09 1.10 8.09 -51.92 -0.42 0.68 16 29 H 0.09 1.09 8.08 -51.92 -0.42 0.67 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.18 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.13 1.48 5.10 -52.49 -0.27 1.21 16 34 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -32.06 316.39 -7.80 -39.86 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.03 Total: -2.48 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.79 Total: -18.21 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.20 Total: -3.35 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.33 Total: -7.49 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.06 -7.80 -39.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190920503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.145 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds