Wall clock time and date at job start Tue Mar 31 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99832 * 2 1 4 4 H 1.48508 * 109.46977 * 270.00244 * 3 2 1 5 5 H 1.48505 * 109.47443 * 29.99979 * 3 2 1 6 6 H 1.48503 * 109.47285 * 150.00398 * 3 2 1 7 7 C 1.37877 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00103 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47039 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.81397 * 102.99958 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47495 * 180.02562 * 12 11 10 14 14 C 1.38262 * 119.94360 * 89.99437 * 13 12 11 15 15 C 1.38145 * 120.05938 * 180.02562 * 14 13 12 16 16 C 1.38731 * 119.93835 * 0.02562 * 15 14 13 17 17 O 1.35905 * 120.05264 * 180.02562 * 16 15 14 18 18 C 1.42905 * 116.99842 * 180.02562 * 17 16 15 19 19 F 1.39897 * 109.46886 * 299.99632 * 18 17 16 20 20 F 1.39898 * 109.47456 * 59.99851 * 18 17 16 21 21 C 1.38729 * 119.89194 * 0.27526 * 16 15 14 22 22 C 1.38146 * 119.94131 * 359.46928 * 21 16 15 23 23 H 0.97000 * 120.00128 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47215 * 60.00465 * 9 7 2 25 25 H 1.09002 * 109.47344 * 300.00523 * 9 7 2 26 26 H 1.09003 * 109.46808 * 60.00129 * 10 9 7 27 27 H 1.09002 * 109.47409 * 300.00397 * 10 9 7 28 28 H 1.09002 * 109.47140 * 59.99952 * 12 11 10 29 29 H 1.09006 * 109.47367 * 300.00250 * 12 11 10 30 30 H 1.07999 * 119.97562 * 0.03351 * 14 13 12 31 31 H 1.07990 * 120.03151 * 179.97438 * 15 14 13 32 32 H 1.09001 * 109.47103 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.03286 * 179.71870 * 21 16 15 34 34 H 1.08005 * 119.97222 * 180.23075 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2330 0.0002 12 6 2.6650 -6.4702 0.0009 13 6 2.0635 -7.8519 0.0010 14 6 1.7883 -8.4849 -1.1971 15 6 1.2364 -9.7513 -1.1998 16 6 0.9578 -10.3877 0.0010 17 8 0.4153 -11.6338 0.0010 18 6 0.1545 -12.2278 1.2743 19 9 1.3508 -12.3387 1.9910 20 9 -0.7439 -11.4268 1.9874 21 6 1.2290 -9.7480 1.2017 22 6 1.7858 -8.4838 1.1990 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 3.2811 -6.3417 0.8909 29 1 3.2813 -6.3426 -0.8891 30 1 2.0051 -7.9889 -2.1316 31 1 1.0213 -10.2451 -2.1358 32 1 -0.2762 -13.2189 1.1315 33 1 1.0088 -10.2395 2.1379 34 1 2.0006 -7.9868 2.1336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190920503.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:13 Heat of formation + Delta-G solvation = -155.718967 kcal Electronic energy + Delta-G solvation = -19210.366326 eV Core-core repulsion = 15675.885520 eV Total energy + Delta-G solvation = -3534.480806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.31386 -48.31733 -41.04257 -38.72398 -35.77315 -33.25262 -32.89916 -32.10417 -28.46894 -27.32437 -26.35467 -24.00070 -23.31627 -22.35915 -20.03991 -19.12221 -18.88311 -18.67320 -17.30273 -17.09838 -16.51376 -16.49189 -16.13874 -15.67831 -15.55650 -15.16096 -14.97692 -14.91251 -14.64727 -14.59109 -14.22332 -14.09470 -13.58444 -13.55319 -13.42559 -12.91106 -12.83362 -12.62509 -12.31849 -12.16804 -11.93697 -11.67706 -11.32313 -10.82157 -10.60987 -10.07457 -9.32143 -8.63118 -8.23235 -6.37111 -0.03910 0.28203 1.01784 1.41153 1.42742 1.53997 1.60872 1.78549 2.40404 2.56803 2.71493 3.09882 3.49891 3.65933 3.69423 3.72679 3.80768 4.05926 4.26500 4.27941 4.39270 4.40125 4.55630 4.61288 4.88418 4.96255 5.07089 5.19234 5.38218 5.49236 5.49816 5.52806 5.73771 6.00778 6.10808 6.77610 7.32517 8.88567 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.043594 B = 0.002501 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.131210 B =11192.556449 C =11360.662214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.044 3.956 10 C -0.050 4.050 11 S -0.314 6.314 12 C -0.031 4.031 13 C -0.102 4.102 14 C -0.070 4.070 15 C -0.138 4.138 16 C 0.097 3.903 17 O -0.326 6.326 18 C 0.404 3.596 19 F -0.210 7.210 20 F -0.212 7.212 21 C -0.200 4.200 22 C -0.073 4.073 23 H 0.265 0.735 24 H -0.005 1.005 25 H -0.006 1.006 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.237 0.763 33 H 0.137 0.863 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 -27.407 0.494 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.198 4.198 11 S -0.084 6.084 12 C -0.178 4.178 13 C -0.104 4.104 14 C -0.089 4.089 15 C -0.157 4.157 16 C 0.052 3.948 17 O -0.243 6.243 18 C 0.315 3.685 19 F -0.192 7.192 20 F -0.194 7.194 21 C -0.218 4.218 22 C -0.093 4.093 23 H 0.074 0.926 24 H 0.014 0.986 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.253 0.747 33 H 0.154 0.846 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.788 -27.524 0.385 27.667 hybrid contribution 1.250 1.394 0.511 1.941 sum 4.039 -26.130 0.896 26.455 Atomic orbital electron populations 1.70124 1.08025 1.28065 1.51037 1.26051 0.95793 1.03628 0.94384 0.85334 0.78591 0.77815 0.78616 1.19574 1.20789 1.18405 1.21563 0.93735 0.91355 1.51473 0.91362 1.18672 0.93719 0.91553 0.95457 1.23335 1.00105 0.92349 1.03982 1.87297 1.19750 1.03203 1.98178 1.22227 0.97205 0.91536 1.06799 1.19338 1.02689 0.94212 0.94126 1.21146 0.95839 0.93614 0.98341 1.20669 1.02843 0.95404 0.96744 1.19069 0.96156 0.84431 0.95102 1.86607 1.77198 1.29128 1.31392 1.24328 0.75351 0.94713 0.74124 1.93076 1.50036 1.96462 1.79605 1.93086 1.68568 1.77948 1.79818 1.21581 1.05281 0.97640 0.97339 1.21022 0.96075 0.93830 0.98383 0.92574 0.98621 0.98761 0.90543 0.90303 0.88378 0.87805 0.83181 0.82591 0.74693 0.84562 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.04 2.41 4.98 29.85 0.15 2.56 16 10 C -0.05 -2.10 5.88 71.98 0.42 -1.67 16 11 S -0.31 -11.71 21.72 -56.49 -1.23 -12.94 16 12 C -0.03 -0.80 6.07 71.24 0.43 -0.37 16 13 C -0.10 -2.53 5.14 -19.85 -0.10 -2.63 16 14 C -0.07 -1.53 9.69 22.25 0.22 -1.31 16 15 C -0.14 -2.83 9.99 22.37 0.22 -2.61 16 16 C 0.10 2.11 6.48 22.51 0.15 2.26 16 17 O -0.33 -5.68 10.43 -92.49 -0.96 -6.64 16 18 C 0.40 4.75 5.98 113.37 0.68 5.43 16 19 F -0.21 -3.26 15.60 44.97 0.70 -2.56 16 20 F -0.21 -3.64 15.57 44.97 0.70 -2.94 16 21 C -0.20 -4.64 8.26 22.37 0.18 -4.45 16 22 C -0.07 -1.78 9.69 22.25 0.22 -1.57 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.10 2.34 8.09 -2.39 -0.02 2.32 16 29 H 0.10 2.37 8.08 -2.39 -0.02 2.35 16 30 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.16 2.42 8.06 -2.92 -0.02 2.40 16 32 H 0.24 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.14 2.96 5.10 -2.91 -0.01 2.95 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -70.67 316.39 5.89 -64.78 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.11 Total: 6.02 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 3.26 Total: -34.47 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.28 Total: -57.22 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.96 Total: -6.64 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 1.40 Total: -5.50 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -11.71 SS G_CDS: -1.23 Total: -12.94 kcal Total: -70.67 5.89 -64.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190920503.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.941 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds