Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29381 * 124.69824 * 2 1 4 4 C 1.30941 * 117.46956 * 179.97438 * 3 2 1 5 5 C 1.36814 * 113.91512 * 359.97438 * 4 3 2 6 6 C 1.46507 * 126.18085 * 180.02562 * 5 4 3 7 7 O 1.21721 * 119.99910 * 5.83195 * 6 5 4 8 8 N 1.34773 * 119.99845 * 185.83394 * 6 5 4 9 9 C 1.36931 * 120.00152 * 4.91949 * 8 6 5 10 10 H 1.07999 * 119.99843 * 59.73325 * 9 8 6 11 11 C 1.38941 * 120.00172 * 239.72839 * 9 8 6 12 12 N 1.31411 * 119.99763 * 356.45001 * 11 9 8 13 13 Si 1.86801 * 119.99910 * 176.45198 * 11 9 8 14 14 H 1.48498 * 109.47389 * 60.00356 * 13 11 9 15 15 H 1.48501 * 109.47089 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47297 * 299.99784 * 13 11 9 17 17 C 1.39691 * 119.99805 * 184.91884 * 8 6 5 18 18 C 1.38989 * 120.07691 * 173.64995 * 17 8 6 19 19 C 1.38072 * 119.91489 * 180.02562 * 18 17 8 20 20 C 1.38318 * 120.08320 * 0.02562 * 19 18 17 21 21 C 1.38314 * 120.15919 * 0.25384 * 20 19 18 22 22 C 1.38077 * 120.08189 * 359.49340 * 21 20 19 23 23 S 1.70920 * 124.70069 * 180.30365 * 2 1 3 24 24 H 1.08997 * 109.46830 * 89.98044 * 1 2 3 25 25 H 1.08999 * 109.47248 * 209.97899 * 1 2 3 26 26 H 1.08994 * 109.47290 * 329.98019 * 1 2 3 27 27 H 1.07998 * 123.03831 * 179.97438 * 4 3 2 28 28 H 0.97001 * 119.99890 * 184.99266 * 12 11 9 29 29 H 1.07999 * 120.04274 * 0.02562 * 18 17 8 30 30 H 1.08005 * 119.96246 * 180.02562 * 19 18 17 31 31 H 1.07998 * 119.91744 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.95998 * 179.74461 * 21 20 19 33 33 H 1.07995 * 120.04364 * 180.23362 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2435 1.0637 0.0000 4 6 3.5425 0.8990 0.0005 5 6 3.9354 -0.4116 0.0016 6 6 5.3164 -0.9005 0.0029 7 8 6.2400 -0.1150 0.1102 8 7 5.5642 -2.2200 -0.1148 9 6 4.5331 -3.0932 -0.3366 10 1 3.9173 -2.9890 -1.2177 11 6 4.2790 -4.1133 0.5719 12 7 5.0702 -4.2832 1.6072 13 14 2.8126 -5.2432 0.3215 14 1 2.9461 -5.9466 -0.9795 15 1 2.7625 -6.2402 1.4209 16 1 1.5631 -4.4407 0.3245 17 6 6.8731 -2.6968 -0.0106 18 6 7.1172 -4.0651 0.0006 19 6 8.4121 -4.5327 0.1042 20 6 9.4658 -3.6415 0.1974 21 6 9.2262 -2.2793 0.1924 22 6 7.9342 -1.8042 0.0837 23 16 2.4800 -1.4052 -0.0074 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5141 27 1 4.2406 1.7230 0.0002 28 1 4.9363 -5.0383 2.2012 29 1 6.2949 -4.7616 -0.0717 30 1 8.6027 -5.5958 0.1126 31 1 10.4776 -4.0102 0.2788 32 1 10.0509 -1.5863 0.2694 33 1 7.7482 -0.7404 0.0761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195272415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = 55.692156 kcal Electronic energy + Delta-G solvation = -20322.242890 eV Core-core repulsion = 17247.618745 eV Total energy + Delta-G solvation = -3074.624145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89359 -38.78922 -37.13728 -35.25225 -32.26630 -31.72737 -29.71817 -29.37108 -27.57776 -25.52317 -23.77958 -22.22922 -21.43849 -20.36772 -18.93949 -17.72446 -17.40849 -15.88950 -15.72928 -15.42156 -14.91064 -14.61434 -14.23063 -13.89810 -13.41743 -13.10487 -13.06385 -12.82397 -12.42673 -12.34294 -12.06936 -11.95555 -11.70936 -11.53515 -11.36614 -10.97380 -10.71660 -10.54404 -10.14003 -9.55908 -9.01405 -8.81541 -8.63870 -8.36970 -8.12271 -7.85890 -7.12283 -6.46292 -4.89582 0.97092 2.07598 2.40498 2.50269 2.59457 2.89331 2.95055 2.97861 3.24052 3.69728 4.05339 4.32775 4.50953 4.70858 5.05131 5.44977 5.64791 5.69077 5.74722 5.82686 5.97049 6.03916 6.08213 6.13785 6.63584 6.66839 6.76554 6.80866 6.93192 7.07403 7.43520 7.53374 7.60104 7.66101 7.81582 8.28169 8.33065 8.50834 9.01487 9.37711 10.14259 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.007632 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.491529 B = 3667.906602 C = 5111.079225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.050 4.050 3 N -0.495 5.495 4 C 0.084 3.916 5 C -0.263 4.263 6 C 0.567 3.433 7 O -0.554 6.554 8 N -0.381 5.381 9 C -0.365 4.365 10 H 0.104 0.896 11 C 0.065 3.935 12 N -0.819 5.819 13 Si 0.903 3.097 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.252 1.252 17 C 0.179 3.821 18 C -0.091 4.091 19 C -0.128 4.128 20 C -0.167 4.167 21 C -0.123 4.123 22 C -0.188 4.188 23 S 0.274 5.726 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.174 0.826 28 H 0.283 0.717 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.694 -0.838 -2.259 5.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.321 4.321 3 N -0.210 5.210 4 C -0.075 4.075 5 C -0.388 4.388 6 C 0.358 3.642 7 O -0.440 6.440 8 N -0.088 5.088 9 C -0.499 4.499 10 H 0.121 0.879 11 C -0.149 4.149 12 N -0.448 5.448 13 Si 0.726 3.274 14 H -0.186 1.186 15 H -0.198 1.198 16 H -0.177 1.177 17 C 0.083 3.917 18 C -0.112 4.112 19 C -0.147 4.147 20 C -0.187 4.187 21 C -0.142 4.142 22 C -0.207 4.207 23 S 0.538 5.462 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.191 0.809 28 H 0.094 0.906 29 H 0.154 0.846 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.988 -1.051 -1.968 5.464 hybrid contribution 0.139 -0.060 0.195 0.247 sum -4.849 -1.110 -1.773 5.281 Atomic orbital electron populations 1.20285 0.86760 1.03155 1.02898 1.28432 1.02551 0.97921 1.03174 1.66160 1.04685 1.32953 1.17245 1.22207 0.90848 0.95020 0.99453 1.25849 0.98619 0.97302 1.17044 1.17478 0.85967 0.82766 0.77971 1.90330 1.43122 1.56603 1.53909 1.40735 1.04780 1.04643 1.58675 1.19365 1.09514 1.12105 1.08929 0.87904 1.25803 0.97434 0.98055 0.93654 1.70005 1.34904 1.28008 1.11930 0.86304 0.81659 0.80106 0.79329 1.18574 1.19812 1.17651 1.18206 0.83861 0.92843 0.96785 1.21069 0.96276 0.94528 0.99278 1.20783 0.92825 0.98275 1.02771 1.20831 0.97775 0.93791 1.06258 1.20859 0.96375 0.94821 1.02104 1.22769 0.91250 1.03619 1.03107 1.85158 0.93370 1.05487 1.62172 0.90418 0.90768 0.90525 0.80867 0.90637 0.84609 0.87681 0.88108 0.87618 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.46 36.01 0.38 -0.52 16 2 C -0.05 -0.86 7.37 -13.31 -0.10 -0.96 16 3 N -0.49 -9.52 10.50 -11.24 -0.12 -9.64 16 4 C 0.08 1.69 11.17 -18.45 -0.21 1.48 16 5 C -0.26 -5.70 6.33 -36.77 -0.23 -5.93 16 6 C 0.57 13.75 7.54 -12.93 -0.10 13.65 16 7 O -0.55 -13.94 13.26 5.17 0.07 -13.87 16 8 N -0.38 -9.34 2.63 -60.40 -0.16 -9.50 16 9 C -0.36 -8.37 5.36 -15.01 -0.08 -8.45 16 10 H 0.10 2.26 6.81 -52.49 -0.36 1.90 16 11 C 0.07 1.45 3.95 -17.47 -0.07 1.38 16 12 N -0.82 -19.58 10.71 55.50 0.59 -18.98 16 13 Si 0.90 16.68 29.35 -169.99 -4.99 11.69 16 14 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 15 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 16 H -0.25 -4.36 7.11 56.52 0.40 -3.96 16 17 C 0.18 4.38 6.05 -83.72 -0.51 3.88 16 18 C -0.09 -2.09 7.72 -39.36 -0.30 -2.39 16 19 C -0.13 -2.58 10.04 -39.61 -0.40 -2.98 16 20 C -0.17 -3.22 10.04 -39.52 -0.40 -3.62 16 21 C -0.12 -2.50 10.04 -39.61 -0.40 -2.90 16 22 C -0.19 -4.39 9.05 -39.36 -0.36 -4.74 16 23 S 0.27 5.16 18.80 -107.50 -2.02 3.14 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.17 3.24 8.06 -52.49 -0.42 2.81 16 28 H 0.28 6.35 8.32 -40.82 -0.34 6.01 16 29 H 0.14 3.19 5.11 -52.49 -0.27 2.92 16 30 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.17 4.21 4.51 -56.35 -0.25 3.95 16 LS Contribution 293.12 15.07 4.42 4.42 Total: -1.00 -26.93 293.12 -7.95 -34.88 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -2.97 Total: 9.97 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.77 Total: -12.11 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.32 Total: -38.12 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.07 Total: -13.87 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -4.99 Total: 11.69 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -2.02 Total: 3.14 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.93 -7.95 -34.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195272415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.571 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds