Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29381 * 124.69824 * 2 1 4 4 C 1.30941 * 117.46956 * 179.97438 * 3 2 1 5 5 C 1.36814 * 113.91512 * 359.97438 * 4 3 2 6 6 C 1.46507 * 126.18085 * 180.02562 * 5 4 3 7 7 O 1.21721 * 119.99910 * 5.83195 * 6 5 4 8 8 N 1.34773 * 119.99845 * 185.83394 * 6 5 4 9 9 C 1.36931 * 120.00152 * 4.91949 * 8 6 5 10 10 H 1.07999 * 119.99843 * 59.73325 * 9 8 6 11 11 C 1.38941 * 120.00172 * 239.72839 * 9 8 6 12 12 N 1.31411 * 119.99763 * 356.45001 * 11 9 8 13 13 Si 1.86801 * 119.99910 * 176.45198 * 11 9 8 14 14 H 1.48498 * 109.47389 * 60.00356 * 13 11 9 15 15 H 1.48501 * 109.47089 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47297 * 299.99784 * 13 11 9 17 17 C 1.39691 * 119.99805 * 184.91884 * 8 6 5 18 18 C 1.38989 * 120.07691 * 173.64995 * 17 8 6 19 19 C 1.38072 * 119.91489 * 180.02562 * 18 17 8 20 20 C 1.38318 * 120.08320 * 0.02562 * 19 18 17 21 21 C 1.38314 * 120.15919 * 0.25384 * 20 19 18 22 22 C 1.38077 * 120.08189 * 359.49340 * 21 20 19 23 23 S 1.70920 * 124.70069 * 180.30365 * 2 1 3 24 24 H 1.08997 * 109.46830 * 89.98044 * 1 2 3 25 25 H 1.08999 * 109.47248 * 209.97899 * 1 2 3 26 26 H 1.08994 * 109.47290 * 329.98019 * 1 2 3 27 27 H 1.07998 * 123.03831 * 179.97438 * 4 3 2 28 28 H 0.97001 * 119.99890 * 184.99266 * 12 11 9 29 29 H 1.07999 * 120.04274 * 0.02562 * 18 17 8 30 30 H 1.08005 * 119.96246 * 180.02562 * 19 18 17 31 31 H 1.07998 * 119.91744 * 179.97438 * 20 19 18 32 32 H 1.08002 * 119.95998 * 179.74461 * 21 20 19 33 33 H 1.07995 * 120.04364 * 180.23362 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2435 1.0637 0.0000 4 6 3.5425 0.8990 0.0005 5 6 3.9354 -0.4116 0.0016 6 6 5.3164 -0.9005 0.0029 7 8 6.2400 -0.1150 0.1102 8 7 5.5642 -2.2200 -0.1148 9 6 4.5331 -3.0932 -0.3366 10 1 3.9173 -2.9890 -1.2177 11 6 4.2790 -4.1133 0.5719 12 7 5.0702 -4.2832 1.6072 13 14 2.8126 -5.2432 0.3215 14 1 2.9461 -5.9466 -0.9795 15 1 2.7625 -6.2402 1.4209 16 1 1.5631 -4.4407 0.3245 17 6 6.8731 -2.6968 -0.0106 18 6 7.1172 -4.0651 0.0006 19 6 8.4121 -4.5327 0.1042 20 6 9.4658 -3.6415 0.1974 21 6 9.2262 -2.2793 0.1924 22 6 7.9342 -1.8042 0.0837 23 16 2.4800 -1.4052 -0.0074 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5141 27 1 4.2406 1.7230 0.0002 28 1 4.9363 -5.0383 2.2012 29 1 6.2949 -4.7616 -0.0717 30 1 8.6027 -5.5958 0.1126 31 1 10.4776 -4.0102 0.2788 32 1 10.0509 -1.5863 0.2694 33 1 7.7482 -0.7404 0.0761 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195272415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = 41.053649 kcal Electronic energy + Delta-G solvation = -20322.877663 eV Core-core repulsion = 17247.618745 eV Total energy + Delta-G solvation = -3075.258918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.61784 -40.32860 -38.82236 -36.98384 -33.99584 -33.08839 -31.37227 -30.94109 -29.08888 -27.24349 -25.25800 -23.84719 -23.09897 -22.04866 -20.58505 -19.27732 -19.02339 -17.58721 -17.39219 -17.03012 -16.51464 -16.25083 -15.75128 -15.40193 -14.97022 -14.72165 -14.64202 -14.24190 -14.04510 -13.85597 -13.46853 -13.28624 -13.14586 -13.09313 -12.91442 -12.50999 -12.26225 -12.05747 -11.75022 -11.19802 -10.67097 -10.37236 -10.21415 -10.11987 -9.62881 -9.53291 -8.81801 -8.16896 -6.64729 -0.57729 0.56029 0.74557 0.82259 1.07466 1.44125 1.44308 1.54548 1.68086 2.15373 2.35400 2.66506 2.83490 3.34125 3.35573 4.02754 4.20911 4.32461 4.38333 4.47004 4.60019 4.69753 4.73639 4.93546 5.00298 5.04613 5.11168 5.21173 5.32331 5.41836 5.77930 5.85950 5.89076 5.98846 6.12704 6.57020 6.79498 6.80626 7.25267 7.63345 8.48692 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.007632 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.491529 B = 3667.906602 C = 5111.079225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.026 4.026 3 N -0.511 5.511 4 C 0.093 3.907 5 C -0.305 4.305 6 C 0.550 3.450 7 O -0.581 6.581 8 N -0.390 5.390 9 C -0.380 4.380 10 H 0.107 0.893 11 C 0.038 3.962 12 N -0.856 5.856 13 Si 0.952 3.048 14 H -0.255 1.255 15 H -0.275 1.275 16 H -0.230 1.230 17 C 0.146 3.854 18 C -0.107 4.107 19 C -0.128 4.128 20 C -0.158 4.158 21 C -0.123 4.123 22 C -0.215 4.215 23 S 0.283 5.717 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.178 0.822 28 H 0.283 0.717 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -1.771 -2.472 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.297 4.297 3 N -0.227 5.227 4 C -0.067 4.067 5 C -0.430 4.430 6 C 0.343 3.657 7 O -0.469 6.469 8 N -0.097 5.097 9 C -0.513 4.513 10 H 0.124 0.876 11 C -0.173 4.173 12 N -0.486 5.486 13 Si 0.771 3.229 14 H -0.179 1.179 15 H -0.199 1.199 16 H -0.153 1.153 17 C 0.050 3.950 18 C -0.128 4.128 19 C -0.146 4.146 20 C -0.177 4.177 21 C -0.142 4.142 22 C -0.234 4.234 23 S 0.547 5.453 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.195 0.805 28 H 0.093 0.907 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.152 0.848 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.343 -2.006 -2.196 7.006 hybrid contribution 0.543 0.304 0.244 0.668 sum -5.801 -1.702 -1.952 6.353 Atomic orbital electron populations 1.20588 0.82825 1.04986 1.05055 1.29152 1.04601 0.96299 0.99651 1.66281 1.04153 1.33461 1.18779 1.22379 0.91590 0.94751 0.98018 1.25739 0.98603 0.98523 1.20113 1.17908 0.86995 0.82866 0.77918 1.90296 1.44164 1.57120 1.55312 1.40958 1.05317 1.04939 1.58508 1.19587 1.09756 1.12498 1.09449 0.87601 1.26478 0.99265 0.98743 0.92803 1.70117 1.36722 1.28735 1.13035 0.85572 0.79464 0.78555 0.79297 1.17902 1.19947 1.15265 1.18602 0.84324 0.93825 0.98262 1.21107 0.97360 0.93770 1.00514 1.21178 0.91976 1.00155 1.01321 1.21255 0.99461 0.92975 1.04003 1.21212 0.95860 0.96273 1.00835 1.22785 0.92711 1.02963 1.04974 1.84801 0.92177 1.05811 1.62472 0.87873 0.88404 0.89207 0.80480 0.90670 0.85714 0.84701 0.83967 0.84785 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.46 71.24 0.74 -0.84 16 2 C -0.03 -0.83 7.37 88.47 0.65 -0.17 16 3 N -0.51 -19.03 10.50 -189.48 -1.99 -21.02 16 4 C 0.09 3.77 11.17 84.49 0.94 4.72 16 5 C -0.31 -13.57 6.33 24.09 0.15 -13.42 16 6 C 0.55 28.10 7.54 86.40 0.65 28.75 16 7 O -0.58 -31.10 13.26 -4.42 -0.06 -31.16 16 8 N -0.39 -19.97 2.63 -463.23 -1.22 -21.19 16 9 C -0.38 -17.88 5.36 84.07 0.45 -17.43 16 10 H 0.11 4.74 6.81 -2.91 -0.02 4.72 16 11 C 0.04 1.71 3.95 84.92 0.34 2.04 16 12 N -0.86 -41.82 10.71 21.66 0.23 -41.59 16 13 Si 0.95 33.23 29.35 68.60 2.01 35.25 16 14 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 15 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 16 H -0.23 -7.11 7.11 99.48 0.71 -6.40 16 17 C 0.15 7.40 6.05 38.25 0.23 7.64 16 18 C -0.11 -4.99 7.72 22.41 0.17 -4.82 16 19 C -0.13 -5.01 10.04 22.25 0.22 -4.79 16 20 C -0.16 -5.74 10.04 22.31 0.22 -5.51 16 21 C -0.12 -4.93 10.04 22.25 0.22 -4.71 16 22 C -0.21 -10.39 9.05 22.41 0.20 -10.18 16 23 S 0.28 10.43 18.80 -56.49 -1.06 9.37 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.18 6.84 8.06 -2.91 -0.02 6.82 16 28 H 0.28 12.96 8.32 -92.71 -0.77 12.19 16 29 H 0.13 6.02 5.11 -2.91 -0.01 6.00 16 30 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 31 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 32 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 33 H 0.16 8.08 4.51 -64.05 -0.29 7.79 16 Total: -1.00 -60.82 293.12 4.00 -56.82 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.87 Total: 32.25 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 5.21 Total: -18.73 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.98 Total: -83.80 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.06 Total: -31.16 kcal Atomic # 14 Polarization: 33.23 SS G_CDS: 2.01 Total: 35.25 kcal Atomic # 16 Polarization: 10.43 SS G_CDS: -1.06 Total: 9.37 kcal Total: -60.82 4.00 -56.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195272415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.874 kcal (2) G-P(sol) polarization free energy of solvation -60.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds