Wall clock time and date at job start Tue Mar 31 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29378 * 124.70871 * 2 1 4 4 C 1.30946 * 117.46051 * 180.02562 * 3 2 1 5 5 C 1.36709 * 113.93787 * 359.97438 * 4 3 2 6 6 C 1.46628 * 126.17342 * 180.02562 * 5 4 3 7 7 O 1.21688 * 120.00382 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99511 * 180.02562 * 6 5 4 9 9 C 1.39101 * 119.99710 * 174.70108 * 8 6 5 10 10 C 1.39522 * 119.83977 * 145.23540 * 9 8 6 11 11 C 1.36354 * 120.16598 * 179.75866 * 10 9 8 12 12 C 1.40882 * 119.83049 * 0.50988 * 11 10 9 13 13 C 1.41139 * 120.15611 * 179.72010 * 12 11 10 14 14 H 1.07999 * 119.99689 * 205.38983 * 13 12 11 15 15 C 1.39902 * 120.00257 * 25.39143 * 13 12 11 16 16 N 1.30874 * 120.00076 * 16.82055 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 196.82962 * 15 13 12 18 18 H 1.48497 * 109.47320 * 59.99760 * 17 15 13 19 19 H 1.48501 * 109.47040 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46747 * 299.99671 * 17 15 13 21 21 C 1.40875 * 119.67793 * 359.74714 * 12 11 10 22 22 C 1.36349 * 119.83666 * 359.97438 * 21 12 11 23 23 S 1.70926 * 124.70765 * 180.31784 * 2 1 3 24 24 H 1.08993 * 109.47234 * 89.97327 * 1 2 3 25 25 H 1.08996 * 109.47021 * 209.97521 * 1 2 3 26 26 H 1.09002 * 109.46704 * 329.97029 * 1 2 3 27 27 H 1.07999 * 123.03360 * 179.97438 * 4 3 2 28 28 H 0.97002 * 120.00048 * 354.96877 * 8 6 5 29 29 H 1.08000 * 119.91362 * 0.02562 * 10 9 8 30 30 H 1.07999 * 120.08086 * 180.25914 * 11 10 9 31 31 H 0.96993 * 119.99943 * 179.97438 * 16 15 13 32 32 H 1.08005 * 120.08089 * 179.97438 * 21 12 11 33 33 H 1.07995 * 119.92398 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0636 0.0000 4 6 3.5427 0.8983 -0.0005 5 6 3.9353 -0.4111 -0.0004 6 6 5.3176 -0.9002 -0.0004 7 8 6.2427 -0.1097 0.0000 8 7 5.5635 -2.2254 -0.0008 9 6 6.8698 -2.6903 -0.1121 10 6 7.2547 -3.8478 0.5651 11 6 8.5322 -4.3122 0.4568 12 6 9.4671 -3.6141 -0.3326 13 6 10.7927 -4.0853 -0.4448 14 1 11.5923 -3.3978 -0.6776 15 6 11.0710 -5.4431 -0.2543 16 7 10.1026 -6.3223 -0.3005 17 14 12.8246 -6.0012 0.0662 18 1 13.3318 -5.3541 1.3028 19 1 12.8519 -7.4765 0.2331 20 1 13.6841 -5.6165 -1.0821 21 6 9.0725 -2.4431 -1.0091 22 6 7.7901 -1.9938 -0.8960 23 16 2.4802 -1.4051 -0.0078 24 1 -0.3633 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5143 27 1 4.2409 1.7222 -0.0010 28 1 4.8292 -2.8550 0.0725 29 1 6.5379 -4.3797 1.1731 30 1 8.8275 -5.2107 0.9783 31 1 10.2956 -7.2637 -0.1688 32 1 9.7840 -1.9025 -1.6158 33 1 7.4862 -1.0960 -1.4137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225438462.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:26 Heat of formation + Delta-G solvation = 27.406346 kcal Electronic energy + Delta-G solvation = -18883.038947 eV Core-core repulsion = 15807.188237 eV Total energy + Delta-G solvation = -3075.850710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16220 -39.25842 -37.23951 -34.55425 -33.10518 -32.39197 -29.73132 -29.43829 -28.36439 -25.33019 -24.27306 -22.32232 -21.26343 -20.35206 -19.38241 -18.34809 -17.38797 -17.03634 -16.03827 -15.39131 -15.23158 -15.08843 -14.47712 -14.11081 -13.97647 -13.61757 -13.16374 -12.78789 -12.76835 -12.62574 -12.17430 -11.85675 -11.74274 -11.52152 -11.14370 -11.02143 -10.58994 -10.23386 -10.00278 -9.83074 -9.64411 -9.55777 -9.30302 -9.00408 -8.80474 -7.60610 -7.06379 -6.82216 -4.35041 0.11720 1.00956 1.42881 2.33339 2.67107 3.03273 3.04981 3.06843 3.10729 3.49119 3.57003 3.89000 3.90875 4.57394 4.72303 4.99838 5.07106 5.11335 5.22580 5.51174 5.65064 5.97779 6.14357 6.34997 6.67067 6.84799 6.98092 7.11314 7.21373 7.44023 7.53897 7.63465 7.79557 7.97581 8.17122 8.21535 8.51019 8.60830 8.82485 8.92582 10.11593 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.051379 B = 0.003077 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.843627 B = 9098.097785 C = 9524.498758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.047 3.953 3 N -0.478 5.478 4 C 0.111 3.889 5 C -0.277 4.277 6 C 0.576 3.424 7 O -0.517 6.517 8 N -0.638 5.638 9 C -0.014 4.014 10 C -0.108 4.108 11 C -0.153 4.153 12 C 0.109 3.891 13 C -0.455 4.455 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.792 5.792 17 Si 0.910 3.090 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.216 4.216 22 C -0.071 4.071 23 S 0.161 5.839 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.189 0.811 28 H 0.392 0.608 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.282 0.718 32 H 0.097 0.903 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 4.353 1.104 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.228 4.228 3 N -0.193 5.193 4 C -0.046 4.046 5 C -0.402 4.402 6 C 0.361 3.639 7 O -0.395 6.395 8 N -0.281 5.281 9 C -0.106 4.106 10 C -0.128 4.128 11 C -0.173 4.173 12 C 0.106 3.894 13 C -0.484 4.484 14 H 0.097 0.903 15 C -0.143 4.143 16 N -0.417 5.417 17 Si 0.735 3.265 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.236 4.236 22 C -0.091 4.091 23 S 0.417 5.583 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.206 0.794 28 H 0.226 0.774 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.043 4.060 1.088 16.585 hybrid contribution 0.966 0.030 0.144 0.977 sum -15.077 4.090 1.232 15.671 Atomic orbital electron populations 1.20501 0.84857 1.04472 1.04147 1.27411 1.02132 0.91150 1.02069 1.66151 1.05001 1.31155 1.16961 1.22452 0.90471 0.95446 0.96233 1.26231 0.98000 0.97660 1.18267 1.16702 0.85606 0.83064 0.78520 1.90839 1.43601 1.55122 1.49936 1.42845 1.08548 1.05477 1.71183 1.17098 0.83779 1.00599 1.09138 1.20225 0.96910 0.96154 0.99552 1.20898 0.92315 1.02119 1.01999 1.17680 0.93194 0.90270 0.88259 1.19563 0.94056 0.93149 1.41680 0.90258 1.25942 0.99436 0.96711 0.92242 1.69822 1.34153 1.03185 1.34540 0.86329 0.82239 0.77766 0.80203 1.18754 1.20305 1.18931 1.20656 0.95177 1.01630 1.06118 1.20238 0.93677 0.98166 0.97047 1.83868 0.96925 1.11607 1.65926 0.89264 0.89845 0.89019 0.79383 0.77419 0.89097 0.85975 0.90717 0.88526 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.11 16 2 C 0.05 0.49 7.37 -13.31 -0.10 0.39 16 3 N -0.48 -6.14 10.50 -11.27 -0.12 -6.26 16 4 C 0.11 1.54 11.16 -18.48 -0.21 1.34 16 5 C -0.28 -4.05 6.52 -36.75 -0.24 -4.29 16 6 C 0.58 10.64 7.50 -12.87 -0.10 10.54 16 7 O -0.52 -11.36 14.60 5.20 0.08 -11.29 16 8 N -0.64 -11.76 5.29 -10.93 -0.06 -11.82 16 9 C -0.01 -0.32 6.27 -83.60 -0.52 -0.84 16 10 C -0.11 -2.47 9.90 -39.78 -0.39 -2.87 16 11 C -0.15 -3.90 8.63 -39.26 -0.34 -4.24 16 12 C 0.11 2.89 5.57 -106.80 -0.59 2.29 16 13 C -0.46 -11.94 9.04 -37.86 -0.34 -12.28 16 14 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 15 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 16 N -0.79 -19.90 10.95 55.55 0.61 -19.29 16 17 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.22 -5.45 9.74 -39.27 -0.38 -5.84 16 22 C -0.07 -1.72 8.57 -39.78 -0.34 -2.06 16 23 S 0.16 1.71 22.31 -107.50 -2.40 -0.69 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 28 H 0.39 5.93 8.01 -40.82 -0.33 5.60 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 31 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 32 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 33 H 0.10 2.40 6.47 -52.49 -0.34 2.06 16 LS Contribution 305.89 15.07 4.61 4.61 Total: -1.00 -30.23 305.89 -8.66 -38.89 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -3.08 Total: 8.75 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.27 Total: -16.22 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.43 Total: -37.36 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.40 Total: -0.69 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.23 -8.66 -38.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225438462.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.299 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds