Wall clock time and date at job start Tue Mar 31 2020 05:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29378 * 124.70871 * 2 1 4 4 C 1.30946 * 117.46051 * 180.02562 * 3 2 1 5 5 C 1.36709 * 113.93787 * 359.97438 * 4 3 2 6 6 C 1.46628 * 126.17342 * 180.02562 * 5 4 3 7 7 O 1.21688 * 120.00382 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99511 * 180.02562 * 6 5 4 9 9 C 1.39101 * 119.99710 * 174.70108 * 8 6 5 10 10 C 1.39522 * 119.83977 * 145.23540 * 9 8 6 11 11 C 1.36354 * 120.16598 * 179.75866 * 10 9 8 12 12 C 1.40882 * 119.83049 * 0.50988 * 11 10 9 13 13 C 1.41139 * 120.15611 * 179.72010 * 12 11 10 14 14 H 1.07999 * 119.99689 * 205.38983 * 13 12 11 15 15 C 1.39902 * 120.00257 * 25.39143 * 13 12 11 16 16 N 1.30874 * 120.00076 * 16.82055 * 15 13 12 17 17 Si 1.86799 * 119.99885 * 196.82962 * 15 13 12 18 18 H 1.48497 * 109.47320 * 59.99760 * 17 15 13 19 19 H 1.48501 * 109.47040 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46747 * 299.99671 * 17 15 13 21 21 C 1.40875 * 119.67793 * 359.74714 * 12 11 10 22 22 C 1.36349 * 119.83666 * 359.97438 * 21 12 11 23 23 S 1.70926 * 124.70765 * 180.31784 * 2 1 3 24 24 H 1.08993 * 109.47234 * 89.97327 * 1 2 3 25 25 H 1.08996 * 109.47021 * 209.97521 * 1 2 3 26 26 H 1.09002 * 109.46704 * 329.97029 * 1 2 3 27 27 H 1.07999 * 123.03360 * 179.97438 * 4 3 2 28 28 H 0.97002 * 120.00048 * 354.96877 * 8 6 5 29 29 H 1.08000 * 119.91362 * 0.02562 * 10 9 8 30 30 H 1.07999 * 120.08086 * 180.25914 * 11 10 9 31 31 H 0.96993 * 119.99943 * 179.97438 * 16 15 13 32 32 H 1.08005 * 120.08089 * 179.97438 * 21 12 11 33 33 H 1.07995 * 119.92398 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0636 0.0000 4 6 3.5427 0.8983 -0.0005 5 6 3.9353 -0.4111 -0.0004 6 6 5.3176 -0.9002 -0.0004 7 8 6.2427 -0.1097 0.0000 8 7 5.5635 -2.2254 -0.0008 9 6 6.8698 -2.6903 -0.1121 10 6 7.2547 -3.8478 0.5651 11 6 8.5322 -4.3122 0.4568 12 6 9.4671 -3.6141 -0.3326 13 6 10.7927 -4.0853 -0.4448 14 1 11.5923 -3.3978 -0.6776 15 6 11.0710 -5.4431 -0.2543 16 7 10.1026 -6.3223 -0.3005 17 14 12.8246 -6.0012 0.0662 18 1 13.3318 -5.3541 1.3028 19 1 12.8519 -7.4765 0.2331 20 1 13.6841 -5.6165 -1.0821 21 6 9.0725 -2.4431 -1.0091 22 6 7.7901 -1.9938 -0.8960 23 16 2.4802 -1.4051 -0.0078 24 1 -0.3633 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5143 27 1 4.2409 1.7222 -0.0010 28 1 4.8292 -2.8550 0.0725 29 1 6.5379 -4.3797 1.1731 30 1 8.8275 -5.2107 0.9783 31 1 10.2956 -7.2637 -0.1688 32 1 9.7840 -1.9025 -1.6158 33 1 7.4862 -1.0960 -1.4137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225438462.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:25 Heat of formation + Delta-G solvation = 8.678949 kcal Electronic energy + Delta-G solvation = -18883.851027 eV Core-core repulsion = 15807.188237 eV Total energy + Delta-G solvation = -3076.662791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48052 -40.52944 -39.01581 -36.28381 -34.85749 -33.26407 -31.55228 -31.08018 -29.61772 -26.96653 -25.34751 -23.83380 -23.01225 -22.01587 -20.65706 -19.48450 -19.20855 -18.45889 -17.52894 -16.99747 -16.58207 -16.27514 -15.82297 -15.63225 -15.23937 -14.90971 -14.53886 -14.44814 -14.04113 -13.70339 -13.49483 -13.32982 -13.22290 -12.80641 -12.74139 -12.69406 -12.37843 -11.94270 -11.62304 -11.34539 -11.11290 -10.83233 -10.62942 -10.55892 -9.93989 -9.52425 -8.92611 -8.65796 -6.30133 -0.88330 0.08643 0.48119 0.77256 1.10683 1.35109 1.40149 1.50662 1.54878 2.08569 2.11994 2.21429 2.72215 3.08207 3.66898 3.75327 3.95834 4.16404 4.35392 4.43796 4.61919 4.68464 4.87132 4.92600 5.04635 5.09324 5.17015 5.25925 5.36022 5.61905 5.81962 5.95871 6.04862 6.31665 6.46749 6.55869 6.61405 6.89603 6.92407 7.16307 8.30420 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.051379 B = 0.003077 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.843627 B = 9098.097785 C = 9524.498758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.062 3.938 3 N -0.504 5.504 4 C 0.121 3.879 5 C -0.322 4.322 6 C 0.581 3.419 7 O -0.561 6.561 8 N -0.635 5.635 9 C -0.002 4.002 10 C -0.106 4.106 11 C -0.171 4.171 12 C 0.079 3.921 13 C -0.494 4.494 14 H 0.075 0.925 15 C 0.037 3.963 16 N -0.818 5.818 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.264 1.264 20 H -0.261 1.261 21 C -0.234 4.234 22 C -0.082 4.082 23 S 0.221 5.779 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.185 0.815 28 H 0.410 0.590 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.291 0.709 32 H 0.096 0.904 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 3.605 1.588 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.211 4.211 3 N -0.219 5.219 4 C -0.038 4.038 5 C -0.446 4.446 6 C 0.369 3.631 7 O -0.441 6.441 8 N -0.279 5.279 9 C -0.095 4.095 10 C -0.126 4.126 11 C -0.191 4.191 12 C 0.077 3.923 13 C -0.523 4.523 14 H 0.093 0.907 15 C -0.178 4.178 16 N -0.444 5.444 17 Si 0.804 3.196 18 H -0.186 1.186 19 H -0.188 1.188 20 H -0.185 1.185 21 C -0.254 4.254 22 C -0.102 4.102 23 S 0.478 5.522 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.202 0.798 28 H 0.247 0.753 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.600 3.287 1.570 18.954 hybrid contribution 1.432 0.361 -0.019 1.477 sum -17.168 3.648 1.551 17.620 Atomic orbital electron populations 1.20815 0.81495 1.06181 1.05876 1.28305 1.03968 0.90600 0.98267 1.66266 1.04417 1.32233 1.18985 1.22534 0.91234 0.95292 0.94723 1.25780 0.97640 0.99008 1.22213 1.17130 0.86916 0.82382 0.76692 1.90808 1.45684 1.56053 1.51594 1.42706 1.07498 1.06157 1.71506 1.17153 0.85218 0.99810 1.07305 1.20485 0.96641 0.96192 0.99301 1.20914 0.93421 1.02222 1.02536 1.17999 0.94074 0.91074 0.89194 1.19781 0.94076 0.94380 1.44042 0.90698 1.26745 1.03790 0.96048 0.91266 1.69850 1.36194 1.03816 1.34525 0.85231 0.76650 0.77823 0.79894 1.18636 1.18794 1.18538 1.20784 0.95953 1.01921 1.06710 1.20342 0.93768 0.98419 0.97699 1.83606 0.93877 1.10004 1.64730 0.87252 0.87188 0.88244 0.79846 0.75287 0.85765 0.86859 0.89804 0.88537 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.46 71.24 0.74 0.10 16 2 C 0.06 1.08 7.37 88.47 0.65 1.73 16 3 N -0.50 -11.91 10.50 -189.56 -1.99 -13.90 16 4 C 0.12 3.28 11.16 84.47 0.94 4.22 16 5 C -0.32 -9.07 6.52 24.10 0.16 -8.91 16 6 C 0.58 21.38 7.50 86.43 0.65 22.03 16 7 O -0.56 -25.26 14.60 -4.31 -0.06 -25.32 16 8 N -0.63 -22.84 5.29 -306.73 -1.62 -24.47 16 9 C 0.00 -0.08 6.27 38.61 0.24 0.16 16 10 C -0.11 -4.82 9.90 22.14 0.22 -4.60 16 11 C -0.17 -8.89 8.63 22.48 0.19 -8.70 16 12 C 0.08 4.37 5.57 -21.27 -0.12 4.25 16 13 C -0.49 -26.87 9.04 23.39 0.21 -26.66 16 14 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 15 C 0.04 1.85 5.15 85.24 0.44 2.29 16 16 N -0.82 -41.61 10.95 21.82 0.24 -41.37 16 17 Si 0.98 37.73 29.59 68.60 2.03 39.76 16 18 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 C -0.23 -12.34 9.74 22.47 0.22 -12.13 16 22 C -0.08 -4.08 8.57 22.14 0.19 -3.89 16 23 S 0.22 4.01 22.31 -56.49 -1.26 2.75 16 24 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.18 4.92 8.06 -2.91 -0.02 4.89 16 28 H 0.41 11.59 8.01 -92.71 -0.74 10.85 16 29 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.11 6.01 6.18 -2.91 -0.02 6.00 16 31 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 32 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 33 H 0.10 4.93 6.47 -2.91 -0.02 4.92 16 Total: -1.00 -67.96 305.89 2.49 -65.47 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.42 Total: 27.18 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.74 Total: -30.09 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -3.38 Total: -79.74 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.06 Total: -25.32 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.26 Total: 2.75 kcal Total: -67.96 2.49 -65.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225438462.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.145 kcal (2) G-P(sol) polarization free energy of solvation -67.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds