Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86800 * 119.99781 * 2 1 4 4 H 1.48500 * 109.47111 * 274.51370 * 3 2 1 5 5 H 1.48494 * 109.47184 * 34.51186 * 3 2 1 6 6 H 1.48495 * 109.47132 * 154.51109 * 3 2 1 7 7 C 1.39866 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00048 * 197.99143 * 7 2 1 9 9 C 1.41139 * 119.99739 * 17.98538 * 7 2 1 10 10 C 1.40885 * 120.15566 * 25.21466 * 9 7 2 11 11 C 1.36343 * 119.83322 * 180.25308 * 10 9 7 12 12 C 1.39566 * 120.16156 * 359.49976 * 11 10 9 13 13 N 1.38859 * 119.84205 * 180.25274 * 12 11 10 14 14 C 1.46493 * 120.00032 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47341 * 180.02562 * 14 13 12 16 16 C 1.38715 * 120.39804 * 89.99978 * 15 14 13 17 17 C 1.38570 * 118.43396 * 179.97438 * 16 15 14 18 18 C 1.38399 * 119.14752 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.63183 * 180.02562 * 18 17 16 20 20 N 1.31946 * 120.73406 * 359.97438 * 18 17 16 21 21 C 1.31908 * 121.70393 * 359.73322 * 20 18 17 22 22 C 1.39570 * 120.31649 * 0.23627 * 12 11 10 23 23 C 1.36343 * 120.15809 * 0.02562 * 22 12 11 24 24 H 0.97000 * 120.00294 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.08446 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.91789 * 179.77968 * 11 10 9 27 27 H 0.97003 * 119.99491 * 0.02562 * 13 12 11 28 28 H 1.09000 * 109.47429 * 300.00311 * 14 13 12 29 29 H 1.09005 * 109.47194 * 60.00282 * 14 13 12 30 30 H 1.08000 * 120.78499 * 359.96259 * 16 15 14 31 31 H 1.08002 * 120.42335 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.60782 * 180.28426 * 21 20 18 33 33 H 1.07994 * 119.91785 * 180.02562 * 22 12 11 34 34 H 1.08002 * 120.07744 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3951 2.1016 -1.3957 5 1 1.4914 2.6232 0.7932 6 1 3.5849 1.4146 0.6025 7 6 2.0085 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2883 9 6 1.3546 -2.4035 -0.3785 10 6 0.2343 -2.3565 -1.2315 11 6 -0.3956 -3.5119 -1.5883 12 6 0.0733 -4.7398 -1.1190 13 7 -0.5701 -5.9129 -1.4908 14 6 -0.0806 -7.2037 -1.0008 15 6 -0.9465 -8.3096 -1.5469 16 6 -0.6332 -8.9149 -2.7550 17 6 -1.4571 -9.9279 -3.2188 18 6 -2.5579 -10.2990 -2.4665 19 17 -3.5983 -11.5670 -3.0352 20 7 -2.8249 -9.7004 -1.3214 21 6 -2.0588 -8.7366 -0.8478 22 6 1.1859 -4.7945 -0.2782 23 6 1.8224 -3.6467 0.0911 24 1 -0.4850 0.8400 0.0004 25 1 -0.1270 -1.4073 -1.5989 26 1 -1.2567 -3.4771 -2.2392 27 1 -1.3432 -5.8776 -2.0756 28 1 0.9477 -7.3514 -1.3307 29 1 -0.1180 -7.2168 0.0885 30 1 0.2325 -8.6039 -3.3210 31 1 -1.2434 -10.4209 -4.1556 32 1 -2.3066 -8.2730 0.0957 33 1 1.5435 -5.7482 0.0808 34 1 2.6835 -3.6905 0.7415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237744736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = 49.046470 kcal Electronic energy + Delta-G solvation = -18593.636477 eV Core-core repulsion = 15516.680447 eV Total energy + Delta-G solvation = -3076.956030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57445 -38.01831 -36.95879 -35.43661 -33.47260 -32.60188 -31.45729 -29.59002 -28.55591 -26.20084 -24.07079 -24.04609 -22.45299 -20.74617 -20.18706 -17.71600 -17.22493 -17.01051 -16.39716 -15.62055 -15.03164 -14.85129 -14.47516 -13.98777 -13.75226 -13.55689 -13.42636 -12.82458 -12.59144 -12.08505 -12.07271 -11.84236 -11.61044 -11.55379 -11.30319 -11.05888 -10.84935 -10.52536 -10.23693 -9.87757 -9.72991 -9.36007 -9.28674 -9.15343 -8.61562 -7.53893 -6.68926 -6.45614 -4.08002 0.57350 0.86953 1.52498 2.87752 3.05737 3.13726 3.17258 3.29287 3.31483 4.03001 4.16559 4.33927 4.51396 4.58522 4.65313 4.72701 4.82310 5.23936 5.54941 5.58315 5.73673 5.78289 6.02811 6.19051 6.22664 6.25313 6.78895 7.00850 7.15055 7.26971 7.41247 7.52325 7.61484 7.74030 8.11234 8.28777 8.40672 8.58897 8.74475 9.02259 9.10326 10.33859 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.055926 B = 0.002502 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.539686 B =11187.112882 C =11354.495234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.077 3.923 10 C -0.124 4.124 11 C -0.159 4.159 12 C 0.087 3.913 13 N -0.758 5.758 14 C 0.182 3.818 15 C -0.140 4.140 16 C -0.046 4.046 17 C -0.156 4.156 18 C 0.172 3.828 19 Cl -0.037 7.037 20 N -0.480 5.480 21 C 0.135 3.865 22 C -0.157 4.157 23 C -0.190 4.190 24 H 0.277 0.723 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.386 0.614 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.088 0.912 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 -16.348 -5.625 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.143 4.143 11 C -0.181 4.181 12 C -0.009 4.009 13 N -0.395 5.395 14 C 0.056 3.944 15 C -0.143 4.143 16 C -0.073 4.073 17 C -0.177 4.177 18 C 0.008 3.992 19 Cl -0.008 7.008 20 N -0.190 5.190 21 C -0.022 4.022 22 C -0.179 4.179 23 C -0.210 4.210 24 H 0.087 0.913 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.218 0.782 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.185 0.815 33 H 0.106 0.894 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.027 -16.664 -5.068 17.877 hybrid contribution 0.570 0.904 -0.669 1.261 sum -3.457 -15.759 -5.737 17.123 Atomic orbital electron populations 1.69854 1.07376 1.28696 1.37420 1.25809 0.94665 1.00946 0.92667 0.86383 0.80582 0.81240 0.78936 1.19590 1.20539 1.18792 1.19393 0.97986 0.91360 1.41054 0.90858 1.17510 0.92329 0.92053 0.90701 1.20912 0.98236 0.96343 0.98853 1.20030 1.01458 0.91847 1.04767 1.17300 0.96242 0.84907 1.02430 1.43822 1.35736 1.01851 1.58065 1.19832 0.95237 0.81169 0.98123 1.21224 0.97945 0.99092 0.96033 1.21623 0.98493 0.92723 0.94423 1.21852 0.94823 0.99407 1.01640 1.21688 0.91740 0.93190 0.92603 1.98405 1.67150 1.48437 1.86829 1.67058 1.30796 1.08815 1.12356 1.22719 0.89306 0.90894 0.99286 1.19855 0.97935 0.97102 1.03044 1.20563 1.02883 0.92664 1.04910 0.91267 0.86409 0.89542 0.78177 0.92137 0.91989 0.83448 0.83677 0.81474 0.89427 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.16 11.01 55.54 0.61 -20.54 16 2 C 0.07 1.90 5.12 -17.34 -0.09 1.81 16 3 Si 0.90 18.99 29.60 -169.99 -5.03 13.96 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.48 9.03 -37.87 -0.34 -12.82 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.08 2.04 5.57 -106.79 -0.59 1.44 16 10 C -0.12 -3.17 8.63 -39.26 -0.34 -3.50 16 11 C -0.16 -3.60 9.82 -39.77 -0.39 -3.99 16 12 C 0.09 1.80 6.67 -83.69 -0.56 1.25 16 13 N -0.76 -12.10 5.69 -59.68 -0.34 -12.44 16 14 C 0.18 2.32 5.04 -5.20 -0.03 2.29 16 15 C -0.14 -1.52 5.27 -104.48 -0.55 -2.07 16 16 C -0.05 -0.44 9.86 -39.28 -0.39 -0.82 16 17 C -0.16 -1.43 9.88 -39.40 -0.39 -1.82 16 18 C 0.17 1.91 7.27 -17.44 -0.13 1.78 16 19 Cl -0.04 -0.36 29.11 -51.86 -1.51 -1.87 16 20 N -0.48 -5.96 10.34 -10.36 -0.11 -6.07 16 21 C 0.14 1.53 10.86 -17.55 -0.19 1.34 16 22 C -0.16 -3.36 9.23 -39.77 -0.37 -3.73 16 23 C -0.19 -4.57 9.74 -39.26 -0.38 -4.95 16 24 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 25 H 0.12 3.14 6.21 -52.48 -0.33 2.82 16 26 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.39 5.76 8.46 -40.82 -0.35 5.42 16 28 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 29 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 30 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.09 1.63 6.68 -52.49 -0.35 1.28 16 34 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -28.29 312.65 -9.90 -38.19 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.50 Total: 7.88 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -4.73 Total: -23.81 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.16 Total: -39.06 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.29 -9.90 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237744736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.235 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds