Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86800 * 119.99781 * 2 1 4 4 H 1.48500 * 109.47111 * 274.51370 * 3 2 1 5 5 H 1.48494 * 109.47184 * 34.51186 * 3 2 1 6 6 H 1.48495 * 109.47132 * 154.51109 * 3 2 1 7 7 C 1.39866 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00048 * 197.99143 * 7 2 1 9 9 C 1.41139 * 119.99739 * 17.98538 * 7 2 1 10 10 C 1.40885 * 120.15566 * 25.21466 * 9 7 2 11 11 C 1.36343 * 119.83322 * 180.25308 * 10 9 7 12 12 C 1.39566 * 120.16156 * 359.49976 * 11 10 9 13 13 N 1.38859 * 119.84205 * 180.25274 * 12 11 10 14 14 C 1.46493 * 120.00032 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47341 * 180.02562 * 14 13 12 16 16 C 1.38715 * 120.39804 * 89.99978 * 15 14 13 17 17 C 1.38570 * 118.43396 * 179.97438 * 16 15 14 18 18 C 1.38399 * 119.14752 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 119.63183 * 180.02562 * 18 17 16 20 20 N 1.31946 * 120.73406 * 359.97438 * 18 17 16 21 21 C 1.31908 * 121.70393 * 359.73322 * 20 18 17 22 22 C 1.39570 * 120.31649 * 0.23627 * 12 11 10 23 23 C 1.36343 * 120.15809 * 0.02562 * 22 12 11 24 24 H 0.97000 * 120.00294 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.08446 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.91789 * 179.77968 * 11 10 9 27 27 H 0.97003 * 119.99491 * 0.02562 * 13 12 11 28 28 H 1.09000 * 109.47429 * 300.00311 * 14 13 12 29 29 H 1.09005 * 109.47194 * 60.00282 * 14 13 12 30 30 H 1.08000 * 120.78499 * 359.96259 * 16 15 14 31 31 H 1.08002 * 120.42335 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.60782 * 180.28426 * 21 20 18 33 33 H 1.07994 * 119.91785 * 180.02562 * 22 12 11 34 34 H 1.08002 * 120.07744 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3951 2.1016 -1.3957 5 1 1.4914 2.6232 0.7932 6 1 3.5849 1.4146 0.6025 7 6 2.0085 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2883 9 6 1.3546 -2.4035 -0.3785 10 6 0.2343 -2.3565 -1.2315 11 6 -0.3956 -3.5119 -1.5883 12 6 0.0733 -4.7398 -1.1190 13 7 -0.5701 -5.9129 -1.4908 14 6 -0.0806 -7.2037 -1.0008 15 6 -0.9465 -8.3096 -1.5469 16 6 -0.6332 -8.9149 -2.7550 17 6 -1.4571 -9.9279 -3.2188 18 6 -2.5579 -10.2990 -2.4665 19 17 -3.5983 -11.5670 -3.0352 20 7 -2.8249 -9.7004 -1.3214 21 6 -2.0588 -8.7366 -0.8478 22 6 1.1859 -4.7945 -0.2782 23 6 1.8224 -3.6467 0.0911 24 1 -0.4850 0.8400 0.0004 25 1 -0.1270 -1.4073 -1.5989 26 1 -1.2567 -3.4771 -2.2392 27 1 -1.3432 -5.8776 -2.0756 28 1 0.9477 -7.3514 -1.3307 29 1 -0.1180 -7.2168 0.0885 30 1 0.2325 -8.6039 -3.3210 31 1 -1.2434 -10.4209 -4.1556 32 1 -2.3066 -8.2730 0.0957 33 1 1.5435 -5.7482 0.0808 34 1 2.6835 -3.6905 0.7415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237744736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = 33.802791 kcal Electronic energy + Delta-G solvation = -18594.297492 eV Core-core repulsion = 15516.680447 eV Total energy + Delta-G solvation = -3077.617045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40149 -39.69741 -37.78271 -36.85756 -35.04763 -33.61542 -32.59715 -31.34587 -30.21696 -27.49066 -25.68518 -24.85192 -23.58572 -22.40227 -21.84696 -19.10808 -18.49169 -17.85230 -17.81673 -17.17763 -16.45833 -15.84288 -15.63185 -15.39828 -14.88910 -14.69742 -14.49703 -14.28361 -14.15886 -13.79071 -13.60749 -13.05202 -12.85933 -12.72112 -12.66983 -12.47702 -12.36549 -12.24877 -11.54401 -11.18728 -11.07116 -10.99880 -10.70466 -10.29543 -9.99671 -9.37153 -8.54289 -8.15309 -5.99532 -0.24502 0.10719 0.74319 1.11924 1.21540 1.41400 1.53951 1.60092 2.28406 2.43577 2.85910 3.09769 3.40873 3.62130 3.80921 3.88368 3.89076 3.99631 4.47902 4.51800 4.52984 4.70261 4.74539 4.84128 5.03666 5.17202 5.20567 5.33682 5.42143 5.44027 5.76175 5.77043 5.94232 6.21179 6.43198 6.60346 6.68381 6.88932 7.10574 7.11923 7.29235 8.49486 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.055926 B = 0.002502 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.539686 B =11187.112882 C =11354.495234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.067 0.933 9 C 0.035 3.965 10 C -0.143 4.143 11 C -0.173 4.173 12 C 0.115 3.885 13 N -0.748 5.748 14 C 0.182 3.818 15 C -0.142 4.142 16 C -0.040 4.040 17 C -0.149 4.149 18 C 0.158 3.842 19 Cl -0.033 7.033 20 N -0.506 5.506 21 C 0.128 3.872 22 C -0.162 4.162 23 C -0.197 4.197 24 H 0.282 0.718 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.393 0.607 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.121 0.879 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -17.985 -6.447 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.163 4.163 11 C -0.195 4.195 12 C 0.016 3.984 13 N -0.384 5.384 14 C 0.057 3.943 15 C -0.145 4.145 16 C -0.066 4.066 17 C -0.169 4.169 18 C -0.006 4.006 19 Cl -0.005 7.005 20 N -0.217 5.217 21 C -0.029 4.029 22 C -0.184 4.184 23 C -0.217 4.217 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.227 0.773 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.187 0.813 31 H 0.190 0.810 32 H 0.191 0.809 33 H 0.139 0.861 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.715 -18.357 -5.900 19.636 hybrid contribution 0.381 1.128 -0.465 1.278 sum -3.333 -17.229 -6.365 18.667 Atomic orbital electron populations 1.69919 1.08719 1.29729 1.38680 1.26600 0.95443 1.04078 0.91934 0.85298 0.79144 0.76758 0.79085 1.19028 1.19688 1.18444 1.19602 0.98025 0.92791 1.43238 0.91433 1.17826 0.93584 0.93127 0.92209 1.20836 0.99004 0.96663 0.99842 1.20216 1.02029 0.91899 1.05379 1.17359 0.95146 0.85873 1.00009 1.43892 1.35320 1.01737 1.57417 1.19944 0.96040 0.79861 0.98407 1.21001 0.97747 0.98957 0.96778 1.21892 0.98858 0.92097 0.93771 1.22127 0.93674 0.98937 1.02190 1.21995 0.92488 0.93405 0.92685 1.98405 1.67177 1.48217 1.86670 1.67035 1.31681 1.09641 1.13373 1.22848 0.89455 0.90869 0.99704 1.20135 0.97803 0.97642 1.02844 1.20783 1.03188 0.92937 1.04833 0.90821 0.88549 0.87752 0.77299 0.90983 0.91616 0.81301 0.81011 0.80920 0.86068 0.88579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.76 11.01 21.82 0.24 -45.52 16 2 C 0.03 1.64 5.12 85.23 0.44 2.07 16 3 Si 0.98 39.86 29.60 68.60 2.03 41.89 16 4 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.51 -28.04 9.03 23.38 0.21 -27.83 16 8 H 0.07 3.64 7.91 -2.91 -0.02 3.62 16 9 C 0.04 1.93 5.57 -21.27 -0.12 1.81 16 10 C -0.14 -7.56 8.63 22.48 0.19 -7.37 16 11 C -0.17 -7.76 9.82 22.15 0.22 -7.54 16 12 C 0.12 4.52 6.67 38.67 0.26 4.78 16 13 N -0.75 -21.60 5.69 -342.71 -1.95 -23.55 16 14 C 0.18 3.99 5.04 85.63 0.43 4.42 16 15 C -0.14 -2.65 5.27 -19.77 -0.10 -2.75 16 16 C -0.04 -0.61 9.86 22.46 0.22 -0.38 16 17 C -0.15 -2.24 9.88 22.39 0.22 -2.02 16 18 C 0.16 3.16 7.27 84.71 0.62 3.78 16 19 Cl -0.03 -0.60 29.11 -2.72 -0.08 -0.68 16 20 N -0.51 -11.72 10.34 -186.69 -1.93 -13.65 16 21 C 0.13 2.63 10.86 84.66 0.92 3.55 16 22 C -0.16 -6.62 9.23 22.15 0.20 -6.42 16 23 C -0.20 -9.51 9.74 22.48 0.22 -9.29 16 24 H 0.28 13.94 8.30 -92.71 -0.77 13.18 16 25 H 0.10 5.40 6.21 -2.91 -0.02 5.38 16 26 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 27 H 0.39 10.53 8.46 -92.71 -0.78 9.75 16 28 H 0.07 1.49 7.88 -2.39 -0.02 1.47 16 29 H 0.07 1.46 7.88 -2.38 -0.02 1.44 16 30 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.12 4.09 6.68 -2.91 -0.02 4.07 16 34 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -62.68 312.65 2.59 -60.09 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.35 Total: 24.61 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 3.93 Total: -43.19 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -3.64 Total: -82.73 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -62.68 2.59 -60.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237744736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.895 kcal (2) G-P(sol) polarization free energy of solvation -62.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds