Wall clock time and date at job start Tue Mar 31 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47421 * 309.58990 * 3 2 1 5 5 C 1.36925 * 120.00287 * 264.19105 * 4 3 2 6 6 H 1.07994 * 120.00095 * 197.31165 * 5 4 3 7 7 C 1.38955 * 119.99622 * 17.30828 * 5 4 3 8 8 N 1.31438 * 120.00470 * 20.72860 * 7 5 4 9 9 Si 1.86799 * 119.99970 * 200.72482 * 7 5 4 10 10 H 1.48499 * 109.47313 * 90.00215 * 9 7 5 11 11 H 1.48495 * 109.47461 * 210.00449 * 9 7 5 12 12 H 1.48498 * 109.47074 * 330.00283 * 9 7 5 13 13 C 1.34774 * 119.99711 * 84.19410 * 4 3 2 14 14 O 1.21841 * 120.00017 * 179.97438 * 13 4 3 15 15 C 1.41191 * 119.99887 * 359.97438 * 13 4 3 16 16 C 1.35206 * 119.99999 * 180.02562 * 15 13 4 17 17 S 1.76209 * 119.99827 * 359.71998 * 16 15 13 18 18 C 1.76201 * 99.99903 * 174.55294 * 17 16 15 19 19 C 1.38949 * 120.07794 * 271.71051 * 18 17 16 20 20 C 1.38083 * 119.92289 * 179.79171 * 19 18 17 21 21 C 1.38306 * 120.07642 * 0.48347 * 20 19 18 22 22 C 1.38308 * 120.15455 * 359.75099 * 21 20 19 23 23 C 1.38088 * 120.07522 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47058 * 189.59035 * 3 2 1 25 25 H 1.08997 * 109.47526 * 69.59714 * 3 2 1 26 26 H 0.97001 * 120.00375 * 179.97438 * 8 7 5 27 27 H 1.07997 * 120.00256 * 0.02562 * 15 13 4 28 28 H 1.07996 * 120.00457 * 180.02562 * 16 15 13 29 29 H 1.08005 * 120.03601 * 0.02562 * 19 18 17 30 30 H 1.07999 * 119.96222 * 180.23151 * 20 19 18 31 31 H 1.07995 * 119.92378 * 179.72168 * 21 20 19 32 32 H 1.07994 * 119.96053 * 179.97438 * 22 21 20 33 33 H 1.08002 * 120.03659 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.8794 1.0644 5 6 3.4379 -0.3560 2.2828 6 1 4.0491 -0.9287 2.9646 7 6 2.9979 0.9122 2.6420 8 7 1.9570 1.4420 2.0391 9 14 3.8855 1.8640 3.9819 10 1 4.9661 2.6822 3.3751 11 1 2.9221 2.7543 4.6779 12 1 4.4741 0.9124 4.9582 13 6 3.2107 -2.2041 0.8442 14 8 3.6176 -2.9360 1.7293 15 6 2.8584 -2.7438 -0.4120 16 6 2.9722 -4.0729 -0.6327 17 16 3.5671 -5.1304 0.6451 18 6 3.3473 -6.6983 -0.1283 19 6 2.1385 -7.3722 -0.0052 20 6 1.9682 -8.5987 -0.6162 21 6 3.0027 -9.1612 -1.3417 22 6 4.2090 -8.4954 -1.4623 23 6 4.3846 -7.2664 -0.8577 24 1 2.9708 1.0142 0.1712 25 1 2.9715 -0.3574 -0.9631 26 1 1.6496 2.3271 2.2901 27 1 2.4981 -2.0951 -1.1966 28 1 2.7032 -4.4857 -1.5937 29 1 1.3316 -6.9353 0.5646 30 1 1.0276 -9.1213 -0.5240 31 1 2.8684 -10.1226 -1.8148 32 1 5.0148 -8.9377 -2.0292 33 1 5.3270 -6.7472 -0.9519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255105691.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:51 Heat of formation + Delta-G solvation = 61.132770 kcal Electronic energy + Delta-G solvation = -19013.206132 eV Core-core repulsion = 15938.817910 eV Total energy + Delta-G solvation = -3074.388222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11052 -38.84559 -35.92629 -34.44942 -32.39728 -31.65569 -30.98591 -30.89554 -27.53119 -25.55580 -23.09664 -22.57307 -22.21525 -18.95776 -17.97956 -17.38961 -17.25534 -16.31989 -15.77582 -15.13868 -14.96755 -14.47668 -14.06225 -13.80307 -13.52563 -13.45928 -13.22875 -13.04772 -12.71558 -12.16125 -12.01966 -11.67529 -11.39687 -11.22161 -11.20785 -11.12368 -10.60001 -10.48222 -10.44392 -10.17775 -9.99805 -9.29675 -9.00116 -8.93602 -8.20952 -8.11713 -7.05910 -6.58737 -4.00609 1.01081 1.34425 1.68120 2.25935 3.02062 3.11556 3.19780 3.24347 3.65150 3.76996 3.93881 4.09029 4.20811 4.83889 4.84282 4.88767 4.91866 5.01237 5.23435 5.39572 5.46692 5.48356 5.71958 5.82061 5.95319 6.10930 6.29544 6.36093 6.38734 6.40366 6.48088 6.53824 6.86961 7.39478 7.87305 8.23103 8.72193 8.93858 9.12479 9.68810 10.45921 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.003780 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.749527 B = 7405.707403 C = 7958.219515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.246 3.754 3 C 0.219 3.781 4 N -0.428 5.428 5 C -0.303 4.303 6 H 0.113 0.887 7 C 0.030 3.970 8 N -0.871 5.871 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.466 3.534 14 O -0.554 6.554 15 C -0.185 4.185 16 C -0.140 4.140 17 S 0.120 5.880 18 C -0.199 4.199 19 C -0.070 4.070 20 C -0.134 4.134 21 C -0.105 4.105 22 C -0.135 4.135 23 C -0.072 4.072 24 H 0.129 0.871 25 H 0.087 0.913 26 H 0.275 0.725 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 -11.810 -8.720 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.073 4.073 3 C 0.092 3.908 4 N -0.146 5.146 5 C -0.431 4.431 6 H 0.131 0.869 7 C -0.175 4.175 8 N -0.509 5.509 9 Si 0.757 3.243 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.260 3.740 14 O -0.442 6.442 15 C -0.221 4.221 16 C -0.276 4.276 17 S 0.366 5.634 18 C -0.307 4.307 19 C -0.091 4.091 20 C -0.154 4.154 21 C -0.123 4.123 22 C -0.155 4.155 23 C -0.093 4.093 24 H 0.147 0.853 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.145 0.855 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.297 -11.811 -7.127 14.183 hybrid contribution -0.052 0.394 -0.840 0.929 sum 3.244 -11.417 -7.967 14.295 Atomic orbital electron populations 1.80895 1.13597 1.10104 1.10517 1.29277 0.95336 0.91607 0.91051 1.18834 0.81628 0.99427 0.90940 1.43572 1.54795 1.04394 1.11829 1.19839 1.29468 0.99558 0.94250 0.86920 1.25360 0.95046 0.97996 0.99049 1.69876 1.20239 1.17749 1.43058 0.85833 0.78949 0.79255 0.80259 1.20025 1.21039 1.19152 1.16791 0.86097 0.82437 0.88636 1.90453 1.52009 1.55723 1.46040 1.21750 1.06525 0.94915 0.98864 1.25881 1.02134 0.97824 1.01774 1.86712 1.75000 0.87480 1.14192 1.23776 0.96655 1.06207 1.04087 1.21638 0.96504 0.94248 0.96660 1.21234 0.99179 0.96192 0.98790 1.21251 0.93493 0.99434 0.98134 1.21224 0.97683 0.95720 1.00860 1.21624 0.98291 0.94979 0.94366 0.85304 0.89514 0.91399 0.85537 0.85161 0.85358 0.85982 0.86188 0.86003 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.19 18.54 42.15 0.78 -10.41 16 2 C 0.25 5.39 13.29 -20.76 -0.28 5.11 16 3 C 0.22 4.28 4.78 -6.83 -0.03 4.25 16 4 N -0.43 -9.88 2.60 -121.32 -0.32 -10.19 16 5 C -0.30 -7.65 9.33 -15.01 -0.14 -7.79 16 6 H 0.11 2.99 7.37 -52.49 -0.39 2.61 16 7 C 0.03 0.72 4.89 -17.45 -0.09 0.64 16 8 N -0.87 -21.48 9.42 55.50 0.52 -20.96 16 9 Si 0.93 19.21 29.60 -169.99 -5.03 14.18 16 10 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 13 C 0.47 10.58 7.31 -15.14 -0.11 10.47 16 14 O -0.55 -13.99 12.98 5.06 0.07 -13.93 16 15 C -0.19 -3.40 8.95 -39.54 -0.35 -3.76 16 16 C -0.14 -2.35 10.06 29.65 0.30 -2.05 16 17 S 0.12 2.11 18.58 -107.50 -2.00 0.12 16 18 C -0.20 -2.88 5.45 -39.06 -0.21 -3.09 16 19 C -0.07 -0.94 9.79 -39.37 -0.39 -1.32 16 20 C -0.13 -1.49 10.04 -39.61 -0.40 -1.89 16 21 C -0.10 -1.06 10.04 -39.53 -0.40 -1.46 16 22 C -0.14 -1.44 10.04 -39.61 -0.40 -1.83 16 23 C -0.07 -0.91 9.79 -39.37 -0.39 -1.30 16 24 H 0.13 2.55 6.40 -51.93 -0.33 2.22 16 25 H 0.09 1.29 6.43 -51.93 -0.33 0.96 16 26 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.13 1.98 6.06 -52.49 -0.32 1.66 16 28 H 0.13 1.82 8.02 -52.49 -0.42 1.40 16 29 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -30.13 309.67 -7.23 -37.36 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.04 Total: 3.19 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.88 Total: -4.02 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.99 Total: -41.56 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.00 Total: 0.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.13 -7.23 -37.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255105691.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.488 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds