Wall clock time and date at job start Tue Mar 31 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47421 * 309.58990 * 3 2 1 5 5 C 1.36925 * 120.00287 * 264.19105 * 4 3 2 6 6 H 1.07994 * 120.00095 * 197.31165 * 5 4 3 7 7 C 1.38955 * 119.99622 * 17.30828 * 5 4 3 8 8 N 1.31438 * 120.00470 * 20.72860 * 7 5 4 9 9 Si 1.86799 * 119.99970 * 200.72482 * 7 5 4 10 10 H 1.48499 * 109.47313 * 90.00215 * 9 7 5 11 11 H 1.48495 * 109.47461 * 210.00449 * 9 7 5 12 12 H 1.48498 * 109.47074 * 330.00283 * 9 7 5 13 13 C 1.34774 * 119.99711 * 84.19410 * 4 3 2 14 14 O 1.21841 * 120.00017 * 179.97438 * 13 4 3 15 15 C 1.41191 * 119.99887 * 359.97438 * 13 4 3 16 16 C 1.35206 * 119.99999 * 180.02562 * 15 13 4 17 17 S 1.76209 * 119.99827 * 359.71998 * 16 15 13 18 18 C 1.76201 * 99.99903 * 174.55294 * 17 16 15 19 19 C 1.38949 * 120.07794 * 271.71051 * 18 17 16 20 20 C 1.38083 * 119.92289 * 179.79171 * 19 18 17 21 21 C 1.38306 * 120.07642 * 0.48347 * 20 19 18 22 22 C 1.38308 * 120.15455 * 359.75099 * 21 20 19 23 23 C 1.38088 * 120.07522 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47058 * 189.59035 * 3 2 1 25 25 H 1.08997 * 109.47526 * 69.59714 * 3 2 1 26 26 H 0.97001 * 120.00375 * 179.97438 * 8 7 5 27 27 H 1.07997 * 120.00256 * 0.02562 * 15 13 4 28 28 H 1.07996 * 120.00457 * 180.02562 * 16 15 13 29 29 H 1.08005 * 120.03601 * 0.02562 * 19 18 17 30 30 H 1.07999 * 119.96222 * 180.23151 * 20 19 18 31 31 H 1.07995 * 119.92378 * 179.72168 * 21 20 19 32 32 H 1.07994 * 119.96053 * 179.97438 * 22 21 20 33 33 H 1.08002 * 120.03659 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.8794 1.0644 5 6 3.4379 -0.3560 2.2828 6 1 4.0491 -0.9287 2.9646 7 6 2.9979 0.9122 2.6420 8 7 1.9570 1.4420 2.0391 9 14 3.8855 1.8640 3.9819 10 1 4.9661 2.6822 3.3751 11 1 2.9221 2.7543 4.6779 12 1 4.4741 0.9124 4.9582 13 6 3.2107 -2.2041 0.8442 14 8 3.6176 -2.9360 1.7293 15 6 2.8584 -2.7438 -0.4120 16 6 2.9722 -4.0729 -0.6327 17 16 3.5671 -5.1304 0.6451 18 6 3.3473 -6.6983 -0.1283 19 6 2.1385 -7.3722 -0.0052 20 6 1.9682 -8.5987 -0.6162 21 6 3.0027 -9.1612 -1.3417 22 6 4.2090 -8.4954 -1.4623 23 6 4.3846 -7.2664 -0.8577 24 1 2.9708 1.0142 0.1712 25 1 2.9715 -0.3574 -0.9631 26 1 1.6496 2.3271 2.2901 27 1 2.4981 -2.0951 -1.1966 28 1 2.7032 -4.4857 -1.5937 29 1 1.3316 -6.9353 0.5646 30 1 1.0276 -9.1213 -0.5240 31 1 2.8684 -10.1226 -1.8148 32 1 5.0148 -8.9377 -2.0292 33 1 5.3270 -6.7472 -0.9519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255105691.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:50 Heat of formation + Delta-G solvation = 44.983432 kcal Electronic energy + Delta-G solvation = -19013.906420 eV Core-core repulsion = 15938.817910 eV Total energy + Delta-G solvation = -3075.088510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.79217 -39.76880 -37.67169 -36.22575 -34.04468 -33.31067 -31.88026 -31.83301 -29.20321 -27.27257 -24.45265 -23.46996 -23.40992 -20.48600 -19.74066 -18.84901 -18.42543 -17.96234 -17.02237 -16.61059 -16.00873 -15.91233 -15.59161 -15.25483 -14.94242 -14.73959 -14.57834 -14.34212 -13.86831 -13.81505 -13.43567 -13.30852 -13.09278 -12.89471 -12.35472 -12.31496 -12.13356 -12.10333 -12.08267 -11.54497 -11.45761 -11.06261 -10.13524 -9.93952 -9.90219 -9.59512 -8.51956 -8.39412 -5.90470 0.01938 0.24294 0.44542 1.01540 1.46670 1.49465 1.59516 1.76859 1.97813 2.24027 2.37449 2.51083 2.82548 3.07241 3.27899 3.64222 3.97738 4.06129 4.11397 4.22231 4.40294 4.55245 4.57860 4.69863 4.82626 4.86320 5.03164 5.08411 5.09496 5.43912 5.45509 5.48848 5.52659 6.00274 6.07460 6.42948 7.01007 7.12469 7.35801 7.93901 8.61967 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.003780 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.749527 B = 7405.707403 C = 7958.219515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.259 3.741 3 C 0.221 3.779 4 N -0.445 5.445 5 C -0.332 4.332 6 H 0.085 0.915 7 C 0.004 3.996 8 N -0.890 5.890 9 Si 0.989 3.011 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.463 3.537 14 O -0.591 6.591 15 C -0.209 4.209 16 C -0.108 4.108 17 S 0.060 5.940 18 C -0.209 4.209 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.097 4.097 22 C -0.131 4.131 23 C -0.083 4.083 24 H 0.126 0.874 25 H 0.139 0.861 26 H 0.275 0.725 27 H 0.158 0.842 28 H 0.164 0.836 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -13.695 -10.930 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.058 4.058 3 C 0.094 3.906 4 N -0.163 5.163 5 C -0.460 4.460 6 H 0.103 0.897 7 C -0.198 4.198 8 N -0.529 5.529 9 Si 0.813 3.187 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.258 3.742 14 O -0.481 6.481 15 C -0.244 4.244 16 C -0.244 4.244 17 S 0.308 5.692 18 C -0.319 4.319 19 C -0.110 4.110 20 C -0.153 4.153 21 C -0.115 4.115 22 C -0.151 4.151 23 C -0.104 4.104 24 H 0.144 0.856 25 H 0.156 0.844 26 H 0.086 0.914 27 H 0.175 0.825 28 H 0.181 0.819 29 H 0.138 0.862 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.707 -13.687 -9.349 16.985 hybrid contribution -0.157 0.636 -0.217 0.690 sum 3.550 -13.051 -9.565 16.566 Atomic orbital electron populations 1.80888 1.14783 1.11443 1.11860 1.29778 0.95814 0.90404 0.89850 1.19145 0.80066 0.99129 0.92254 1.43690 1.55610 1.05050 1.11983 1.19677 1.30578 1.00294 0.95477 0.89679 1.25927 0.95217 0.98031 1.00671 1.69952 1.20860 1.17863 1.44195 0.84984 0.78118 0.77748 0.77832 1.18324 1.21229 1.20246 1.17507 0.84671 0.82240 0.89762 1.90465 1.52901 1.56924 1.47831 1.21716 1.08784 0.95931 0.97967 1.26236 0.98815 0.97066 1.02259 1.86931 1.74784 0.90864 1.16572 1.23403 0.98213 1.04317 1.05925 1.21686 0.96021 0.95583 0.97674 1.21534 1.00681 0.95166 0.97957 1.21711 0.92602 1.00405 0.96766 1.21584 0.98847 0.94608 1.00012 1.21752 0.97941 0.96121 0.94540 0.85590 0.84364 0.91448 0.82488 0.81862 0.86160 0.83553 0.82683 0.82975 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.17 18.54 20.00 0.37 -23.80 16 2 C 0.26 11.27 13.29 89.44 1.19 12.46 16 3 C 0.22 8.45 4.78 84.57 0.40 8.85 16 4 N -0.45 -20.83 2.60 -655.89 -1.70 -22.53 16 5 C -0.33 -17.31 9.33 84.07 0.78 -16.52 16 6 H 0.09 4.79 7.37 -2.91 -0.02 4.77 16 7 C 0.00 0.20 4.89 84.92 0.42 0.61 16 8 N -0.89 -44.29 9.42 21.67 0.20 -44.09 16 9 Si 0.99 40.05 29.60 68.60 2.03 42.08 16 10 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 11 H -0.29 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 13 C 0.46 21.34 7.31 84.97 0.62 21.96 16 14 O -0.59 -31.05 12.98 -4.80 -0.06 -31.12 16 15 C -0.21 -7.45 8.95 22.30 0.20 -7.25 16 16 C -0.11 -3.48 10.06 67.12 0.67 -2.81 16 17 S 0.06 2.14 18.58 -56.49 -1.05 1.09 16 18 C -0.21 -5.86 5.45 22.61 0.12 -5.73 16 19 C -0.09 -2.27 9.79 22.40 0.22 -2.05 16 20 C -0.13 -2.55 10.04 22.25 0.22 -2.33 16 21 C -0.10 -1.54 10.04 22.30 0.22 -1.32 16 22 C -0.13 -2.28 10.04 22.25 0.22 -2.06 16 23 C -0.08 -1.93 9.79 22.40 0.22 -1.71 16 24 H 0.13 4.94 6.40 -2.39 -0.02 4.92 16 25 H 0.14 3.78 6.43 -2.39 -0.02 3.77 16 26 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 27 H 0.16 4.50 6.06 -2.91 -0.02 4.49 16 28 H 0.16 4.09 8.02 -2.91 -0.02 4.06 16 29 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 30 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -68.05 309.67 6.45 -61.60 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.14 Total: 14.65 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.52 Total: 2.11 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -1.13 Total: -90.42 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.06 Total: -31.12 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.05 Total: 1.09 kcal Total: -68.05 6.45 -61.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255105691.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.584 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds