Wall clock time and date at job start Tue Mar 31 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36530 * 120.00183 * 2 1 4 4 H 1.07998 * 120.00494 * 202.14908 * 3 2 1 5 5 C 1.39262 * 119.99663 * 22.14264 * 3 2 1 6 6 N 1.31232 * 120.00061 * 16.42014 * 5 3 2 7 7 Si 1.86804 * 119.99877 * 196.41139 * 5 3 2 8 8 H 1.48497 * 109.47185 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.46918 * 120.00634 * 7 5 3 10 10 H 1.48498 * 109.47042 * 240.00536 * 7 5 3 11 11 C 1.34775 * 119.99959 * 180.02562 * 2 1 3 12 12 O 1.21754 * 120.00122 * 179.97438 * 11 2 1 13 13 C 1.46358 * 119.99792 * 359.97438 * 11 2 1 14 14 C 1.35159 * 119.99593 * 185.84893 * 13 11 2 15 15 C 1.46661 * 119.99860 * 9.09639 * 14 13 11 16 16 N 1.29407 * 124.87888 * 225.14181 * 15 14 13 17 17 C 1.33423 * 118.09959 * 180.02562 * 16 15 14 18 18 C 1.41508 * 128.77213 * 180.02562 * 17 16 15 19 19 C 1.35966 * 120.52100 * 179.97438 * 18 17 16 20 20 C 1.38919 * 120.84863 * 0.02562 * 19 18 17 21 21 C 1.37591 * 120.05860 * 0.02562 * 20 19 18 22 22 C 1.39436 * 120.04242 * 359.93157 * 21 20 19 23 23 S 1.75850 * 124.89047 * 44.83786 * 15 14 13 24 24 H 1.09001 * 109.47013 * 270.95503 * 1 2 3 25 25 H 1.08999 * 109.47272 * 30.95245 * 1 2 3 26 26 H 1.08997 * 109.47325 * 150.95484 * 1 2 3 27 27 H 0.97000 * 120.00068 * 179.97438 * 6 5 3 28 28 H 1.07995 * 120.00538 * 5.57444 * 13 11 2 29 29 H 1.07997 * 119.99638 * 189.09180 * 14 13 11 30 30 H 1.08000 * 119.73342 * 359.97330 * 18 17 16 31 31 H 1.08003 * 119.57619 * 180.02562 * 19 18 17 32 32 H 1.07998 * 119.97082 * 179.97438 * 20 19 18 33 33 H 1.08001 * 119.97688 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1477 1.1824 0.0000 4 1 3.1679 1.2169 -0.3526 5 6 1.5284 2.3439 0.4546 6 7 0.4322 2.2655 1.1718 7 14 2.2582 4.0137 0.0437 8 1 3.4860 3.8302 -0.7712 9 1 1.2688 4.8107 -0.7251 10 1 2.5997 4.7274 1.3003 11 6 2.1388 -1.1672 -0.0005 12 8 3.3564 -1.1672 -0.0010 13 6 1.4070 -2.4347 -0.0005 14 6 2.0776 -3.6021 0.1182 15 6 3.5071 -3.5966 0.4461 16 7 4.4041 -4.3203 -0.1424 17 6 5.6693 -4.2079 0.2660 18 6 6.8180 -4.8820 -0.2122 19 6 8.0395 -4.6359 0.3318 20 6 8.1872 -3.7205 1.3663 21 6 7.0899 -3.0492 1.8545 22 6 5.8280 -3.2857 1.3106 23 16 4.2500 -2.6001 1.6900 24 1 -0.3633 0.0171 1.0275 25 1 -0.3634 0.8813 -0.5285 26 1 -0.3634 -0.8984 -0.4989 27 1 0.0010 3.0745 1.4887 28 1 0.3308 -2.4369 -0.0910 29 1 1.5607 -4.5390 -0.0282 30 1 6.7235 -5.5977 -1.0155 31 1 8.9061 -5.1587 -0.0451 32 1 9.1642 -3.5362 1.7882 33 1 7.2062 -2.3381 2.6590 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255330225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:05 Heat of formation + Delta-G solvation = 46.996289 kcal Electronic energy + Delta-G solvation = -19626.337120 eV Core-core repulsion = 16551.335893 eV Total energy + Delta-G solvation = -3075.001226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.06143 -40.44167 -37.85216 -36.74209 -34.27323 -33.65975 -31.98280 -30.30570 -28.41272 -27.03461 -25.71614 -24.22205 -23.09167 -21.89027 -20.04332 -19.11119 -18.84261 -18.37125 -17.29873 -16.82856 -16.35892 -16.07237 -15.88481 -15.60295 -15.56100 -14.85431 -14.55979 -14.43093 -13.86485 -13.63425 -13.29086 -13.24969 -13.16409 -12.82171 -12.72719 -12.61023 -12.28789 -12.15816 -11.67661 -11.15888 -11.00176 -10.89764 -10.53515 -10.16441 -9.76057 -9.16299 -8.59699 -8.38609 -5.95582 -0.80256 0.23334 0.31748 0.72048 0.98724 1.36228 1.39066 1.52040 1.61086 2.23160 2.46079 2.80346 3.02490 3.11596 3.16848 3.74253 4.01133 4.02912 4.16279 4.37300 4.42357 4.47951 4.68224 4.73365 4.94668 4.98386 5.08081 5.18215 5.32415 5.33797 5.38098 5.41753 5.47063 5.89936 6.04670 6.43528 6.72147 7.12131 7.39849 8.01935 8.57118 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.004861 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.433858 B = 5758.231269 C = 6604.074431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.435 5.435 3 C -0.336 4.336 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.879 5.879 7 Si 0.985 3.015 8 H -0.277 1.277 9 H -0.262 1.262 10 H -0.274 1.274 11 C 0.420 3.580 12 O -0.608 6.608 13 C -0.141 4.141 14 C -0.053 4.053 15 C 0.137 3.863 16 N -0.494 5.494 17 C 0.048 3.952 18 C -0.083 4.083 19 C -0.106 4.106 20 C -0.099 4.099 21 C -0.093 4.093 22 C -0.221 4.221 23 S 0.131 5.869 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.278 0.722 28 H 0.178 0.822 29 H 0.193 0.807 30 H 0.143 0.857 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -10.970 0.833 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.150 5.150 3 C -0.464 4.464 4 H 0.089 0.911 5 C -0.200 4.200 6 N -0.516 5.516 7 Si 0.808 3.192 8 H -0.201 1.201 9 H -0.187 1.187 10 H -0.200 1.200 11 C 0.212 3.788 12 O -0.498 6.498 13 C -0.166 4.166 14 C -0.077 4.077 15 C -0.142 4.142 16 N -0.209 5.209 17 C -0.076 4.076 18 C -0.104 4.104 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.341 4.341 23 S 0.395 5.605 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.195 0.805 29 H 0.210 0.790 30 H 0.160 0.840 31 H 0.190 0.810 32 H 0.188 0.812 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.231 -10.348 1.267 11.664 hybrid contribution 0.545 0.869 -0.444 1.118 sum 5.776 -9.478 0.823 11.130 Atomic orbital electron populations 1.21646 0.79150 1.00948 1.01623 1.43813 1.06997 1.04857 1.59334 1.19603 0.99234 0.85575 1.42027 0.91074 1.26080 0.96817 1.02788 0.94271 1.69980 1.19819 1.30973 1.30784 0.85006 0.78455 0.77320 0.78371 1.20138 1.18689 1.19950 1.19028 0.88021 0.85422 0.86294 1.90799 1.14766 1.87364 1.56834 1.23669 1.02015 0.90745 1.00182 1.21798 0.87043 0.99915 0.98954 1.25821 0.98550 0.94055 0.95788 1.66264 1.00691 1.26141 1.27813 1.19511 0.91748 0.99426 0.96911 1.20784 0.89864 0.99259 1.00535 1.21094 0.97128 0.98254 0.96203 1.21553 0.98737 0.95398 0.96384 1.20675 0.89468 1.00862 1.00622 1.24549 1.00700 1.03433 1.05401 1.85010 0.98821 1.41665 1.35045 0.92991 0.92748 0.90227 0.91197 0.80527 0.79030 0.83957 0.81032 0.81208 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.53 8.48 127.77 1.08 5.61 16 2 N -0.43 -21.90 3.00 -663.88 -1.99 -23.89 16 3 C -0.34 -18.72 9.26 84.21 0.78 -17.94 16 4 H 0.07 4.33 7.42 -2.91 -0.02 4.31 16 5 C 0.00 0.25 4.99 85.03 0.42 0.67 16 6 N -0.88 -44.80 10.88 21.71 0.24 -44.56 16 7 Si 0.99 41.51 29.59 68.60 2.03 43.54 16 8 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 9 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 C 0.42 20.31 7.15 86.36 0.62 20.93 16 12 O -0.61 -33.45 11.22 -4.52 -0.05 -33.50 16 13 C -0.14 -5.00 9.28 23.67 0.22 -4.78 16 14 C -0.05 -1.78 10.23 23.76 0.24 -1.53 16 15 C 0.14 5.59 5.80 87.25 0.51 6.10 16 16 N -0.49 -20.42 10.56 -181.78 -1.92 -22.34 16 17 C 0.05 1.87 6.93 40.20 0.28 2.15 16 18 C -0.08 -2.45 10.06 22.55 0.23 -2.22 16 19 C -0.11 -2.33 9.93 21.90 0.22 -2.12 16 20 C -0.10 -2.24 10.04 22.28 0.22 -2.02 16 21 C -0.09 -2.86 10.07 22.41 0.23 -2.63 16 22 C -0.22 -8.55 6.55 23.05 0.15 -8.40 16 23 S 0.13 5.59 19.58 -56.49 -1.11 4.48 16 24 H 0.05 2.23 7.60 -2.39 -0.02 2.21 16 25 H 0.05 2.39 7.09 -2.39 -0.02 2.37 16 26 H 0.08 2.52 5.98 -2.39 -0.01 2.50 16 27 H 0.28 13.16 8.30 -92.71 -0.77 12.39 16 28 H 0.18 4.67 6.13 -2.91 -0.02 4.65 16 29 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 31 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 32 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -72.86 297.72 3.54 -69.32 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.14 Total: 13.13 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 5.20 Total: -6.18 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.68 Total: -90.79 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.05 Total: -33.50 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.11 Total: 4.48 kcal Total: -72.86 3.54 -69.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255330225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.320 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds