Wall clock time and date at job start Tue Mar 31 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31472 * 1 3 3 Si 1.86798 * 120.00393 * 2 1 4 4 H 1.48506 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47320 * 299.99973 * 3 2 1 6 6 H 1.48506 * 109.46724 * 60.00481 * 3 2 1 7 7 C 1.38885 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00119 * 179.97438 * 7 2 1 9 9 N 1.37191 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99612 * 180.02562 * 9 7 2 11 11 O 1.21578 * 119.99929 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99778 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00064 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.47329 * 180.02562 * 13 12 10 15 15 C 1.38233 * 120.00207 * 89.99403 * 14 13 12 16 16 C 1.38234 * 120.00037 * 179.72405 * 15 14 13 17 17 C 1.38234 * 120.00240 * 0.26327 * 16 15 14 18 18 C 1.50700 * 120.00260 * 179.97438 * 17 16 15 19 19 F 1.39904 * 109.46998 * 89.99804 * 18 17 16 20 20 F 1.39906 * 109.47073 * 209.99959 * 18 17 16 21 21 F 1.39899 * 109.47068 * 330.00293 * 18 17 16 22 22 C 1.38238 * 119.99693 * 0.02562 * 17 16 15 23 23 C 1.38234 * 120.00047 * 359.95697 * 22 17 16 24 24 H 0.96996 * 119.99909 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00212 * 359.97438 * 9 7 2 26 26 H 0.97003 * 119.99660 * 359.97438 * 12 10 9 27 27 H 1.09000 * 109.46981 * 60.00022 * 13 12 10 28 28 H 1.09001 * 109.46676 * 299.99836 * 13 12 10 29 29 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 30 30 H 1.07999 * 120.00009 * 180.28389 * 16 15 14 31 31 H 1.08001 * 119.99658 * 179.97438 * 22 17 16 32 32 H 1.07999 * 119.99990 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7089 1.3462 0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8901 2.3963 1.2126 7 6 2.0091 -1.2028 -0.0005 8 1 3.0890 -1.2029 -0.0010 9 7 1.3230 -2.3909 -0.0016 10 6 1.9969 -3.5581 -0.0016 11 8 3.2127 -3.5581 -0.0011 12 7 1.3229 -4.7253 -0.0021 13 6 2.0554 -5.9941 -0.0027 14 6 1.0761 -7.1394 -0.0038 15 6 0.6272 -7.6639 -1.2015 16 6 -0.2667 -8.7183 -1.2025 17 6 -0.7160 -9.2447 -0.0059 18 6 -1.6910 -10.3938 -0.0070 19 9 -0.9869 -11.6028 -0.0051 20 9 -2.4977 -10.3221 1.1339 21 9 -2.4935 -10.3234 -1.1508 22 6 -0.2718 -8.7163 1.1918 23 6 0.6224 -7.6621 1.1928 24 1 -0.4850 0.8400 0.0004 25 1 0.3531 -2.3908 -0.0016 26 1 0.3529 -4.7252 -0.0021 27 1 2.6820 -6.0522 0.8873 28 1 2.6820 -6.0514 -0.8927 29 1 0.9787 -7.2531 -2.1364 30 1 -0.6138 -9.1310 -2.1382 31 1 -0.6232 -9.1273 2.1267 32 1 0.9698 -7.2496 2.1285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260760326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:05 Heat of formation + Delta-G solvation = -158.361537 kcal Electronic energy + Delta-G solvation = -21557.151996 eV Core-core repulsion = 17488.636175 eV Total energy + Delta-G solvation = -4068.515821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.40674 -47.92212 -47.87205 -39.88513 -38.56125 -34.89565 -33.76684 -31.98120 -31.38644 -30.95356 -27.55188 -25.07966 -23.89898 -23.20165 -21.41682 -19.96698 -18.76385 -18.70597 -18.60900 -17.93924 -17.37548 -15.69515 -15.58740 -15.13806 -14.83993 -14.71722 -14.66097 -14.35252 -14.33726 -14.20031 -14.09648 -14.02985 -13.66153 -13.48254 -13.06908 -12.90839 -12.38126 -12.35355 -11.50164 -11.43205 -11.36463 -11.07028 -10.30513 -10.16310 -9.54704 -9.49302 -9.33383 -8.85490 -8.40112 -7.89850 -6.31910 -3.74175 0.58603 1.00554 2.40395 3.11648 3.22744 3.30984 3.37898 3.45825 3.76819 3.94221 4.17445 4.29388 4.38957 4.54060 4.57281 4.58489 5.05222 5.06913 5.36321 5.37571 5.53738 5.75527 5.76333 5.88785 5.91069 6.06003 6.33544 6.48669 7.18860 7.57485 7.67653 8.40170 8.77086 9.24980 9.67532 10.15799 10.87623 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036044 B = 0.002794 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.636648 B =10018.838471 C =10326.326342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 0.930 3.070 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.285 4.285 8 H 0.102 0.898 9 N -0.586 5.586 10 C 0.657 3.343 11 O -0.626 6.626 12 N -0.759 5.759 13 C 0.182 3.818 14 C -0.063 4.063 15 C -0.102 4.102 16 C -0.073 4.073 17 C -0.185 4.185 18 C 0.509 3.491 19 F -0.178 7.178 20 F -0.178 7.178 21 F -0.178 7.178 22 C -0.073 4.073 23 C -0.102 4.102 24 H 0.268 0.732 25 H 0.391 0.609 26 H 0.389 0.611 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 -20.464 -0.014 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.184 4.184 3 Si 0.757 3.243 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.415 4.415 8 H 0.120 0.880 9 N -0.227 5.227 10 C 0.357 3.643 11 O -0.510 6.510 12 N -0.418 5.418 13 C 0.057 3.943 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.091 4.091 17 C -0.187 4.187 18 C 0.455 3.545 19 F -0.160 7.160 20 F -0.159 7.159 21 F -0.159 7.159 22 C -0.091 4.091 23 C -0.120 4.120 24 H 0.078 0.922 25 H 0.224 0.776 26 H 0.221 0.779 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.019 -20.281 -0.014 20.675 hybrid contribution -0.910 0.582 0.000 1.080 sum -4.929 -19.698 -0.015 20.306 Atomic orbital electron populations 1.69644 1.05756 1.27663 1.52287 1.25169 0.95685 0.99363 0.98153 0.85794 0.79552 0.81352 0.77573 1.19363 1.20925 1.20930 1.19618 0.92992 0.81455 1.47397 0.87984 1.40999 1.08707 1.03037 1.69939 1.15882 0.85581 0.80279 0.82511 1.90741 1.12006 1.86377 1.61828 1.44968 1.08780 1.03919 1.84137 1.19858 0.91650 0.79763 1.03017 1.20379 0.96407 0.96329 0.93216 1.21179 0.96615 0.95615 0.98622 1.20939 0.95777 0.95579 0.96819 1.19974 1.02796 0.99204 0.96686 1.18337 0.80050 0.82604 0.73541 1.93225 1.78587 1.47990 1.96155 1.93194 1.75054 1.96419 1.51232 1.93192 1.75279 1.96427 1.51000 1.20940 0.95799 0.95571 0.96805 1.21180 0.96589 0.95623 0.98640 0.92211 0.77570 0.77882 0.91057 0.91069 0.84362 0.84645 0.84643 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.10 13.05 55.49 0.72 -24.37 16 2 C 0.02 0.45 5.50 -17.47 -0.10 0.35 16 3 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.28 -7.99 9.68 -14.91 -0.14 -8.13 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.59 -14.89 5.29 -15.34 -0.08 -14.97 16 10 C 0.66 15.47 8.52 -86.91 -0.74 14.73 16 11 O -0.63 -17.04 15.92 5.30 0.08 -16.96 16 12 N -0.76 -13.16 5.55 -66.42 -0.37 -13.53 16 13 C 0.18 2.58 5.80 -5.20 -0.03 2.55 16 14 C -0.06 -0.69 5.25 -104.63 -0.55 -1.24 16 15 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 16 C -0.07 -0.68 9.40 -39.58 -0.37 -1.05 16 17 C -0.19 -1.81 5.45 -104.62 -0.57 -2.38 16 18 C 0.51 4.97 3.36 36.01 0.12 5.09 16 19 F -0.18 -1.80 17.30 2.25 0.04 -1.76 16 20 F -0.18 -1.79 16.46 2.25 0.04 -1.75 16 21 F -0.18 -1.79 16.46 2.25 0.04 -1.75 16 22 C -0.07 -0.68 9.40 -39.58 -0.37 -1.05 16 23 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 24 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.39 9.52 7.91 -40.82 -0.32 9.19 16 26 H 0.39 5.92 8.48 -40.82 -0.35 5.58 16 27 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 28 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 29 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.14 1.03 7.60 -52.49 -0.40 0.64 16 31 H 0.14 1.03 7.60 -52.49 -0.40 0.64 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -31.57 302.04 -6.18 -37.75 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -2.66 Total: 10.48 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -3.52 Total: 6.07 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.27 Total: -52.87 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.08 Total: -16.96 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.11 Total: -5.27 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.57 -6.18 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.607 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds