Wall clock time and date at job start Tue Mar 31 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31472 * 1 3 3 Si 1.86798 * 120.00393 * 2 1 4 4 H 1.48506 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47320 * 299.99973 * 3 2 1 6 6 H 1.48506 * 109.46724 * 60.00481 * 3 2 1 7 7 C 1.38885 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00119 * 179.97438 * 7 2 1 9 9 N 1.37191 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99612 * 180.02562 * 9 7 2 11 11 O 1.21578 * 119.99929 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99778 * 179.97438 * 10 9 7 13 13 C 1.46499 * 120.00064 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.47329 * 180.02562 * 13 12 10 15 15 C 1.38233 * 120.00207 * 89.99403 * 14 13 12 16 16 C 1.38234 * 120.00037 * 179.72405 * 15 14 13 17 17 C 1.38234 * 120.00240 * 0.26327 * 16 15 14 18 18 C 1.50700 * 120.00260 * 179.97438 * 17 16 15 19 19 F 1.39904 * 109.46998 * 89.99804 * 18 17 16 20 20 F 1.39906 * 109.47073 * 209.99959 * 18 17 16 21 21 F 1.39899 * 109.47068 * 330.00293 * 18 17 16 22 22 C 1.38238 * 119.99693 * 0.02562 * 17 16 15 23 23 C 1.38234 * 120.00047 * 359.95697 * 22 17 16 24 24 H 0.96996 * 119.99909 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00212 * 359.97438 * 9 7 2 26 26 H 0.97003 * 119.99660 * 359.97438 * 12 10 9 27 27 H 1.09000 * 109.46981 * 60.00022 * 13 12 10 28 28 H 1.09001 * 109.46676 * 299.99836 * 13 12 10 29 29 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 30 30 H 1.07999 * 120.00009 * 180.28389 * 16 15 14 31 31 H 1.08001 * 119.99658 * 179.97438 * 22 17 16 32 32 H 1.07999 * 119.99990 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7089 1.3462 0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8901 2.3963 1.2126 7 6 2.0091 -1.2028 -0.0005 8 1 3.0890 -1.2029 -0.0010 9 7 1.3230 -2.3909 -0.0016 10 6 1.9969 -3.5581 -0.0016 11 8 3.2127 -3.5581 -0.0011 12 7 1.3229 -4.7253 -0.0021 13 6 2.0554 -5.9941 -0.0027 14 6 1.0761 -7.1394 -0.0038 15 6 0.6272 -7.6639 -1.2015 16 6 -0.2667 -8.7183 -1.2025 17 6 -0.7160 -9.2447 -0.0059 18 6 -1.6910 -10.3938 -0.0070 19 9 -0.9869 -11.6028 -0.0051 20 9 -2.4977 -10.3221 1.1339 21 9 -2.4935 -10.3234 -1.1508 22 6 -0.2718 -8.7163 1.1918 23 6 0.6224 -7.6621 1.1928 24 1 -0.4850 0.8400 0.0004 25 1 0.3531 -2.3908 -0.0016 26 1 0.3529 -4.7252 -0.0021 27 1 2.6820 -6.0522 0.8873 28 1 2.6820 -6.0514 -0.8927 29 1 0.9787 -7.2531 -2.1364 30 1 -0.6138 -9.1310 -2.1382 31 1 -0.6232 -9.1273 2.1267 32 1 0.9698 -7.2496 2.1285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260760326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:05 Heat of formation + Delta-G solvation = -178.581764 kcal Electronic energy + Delta-G solvation = -21558.028811 eV Core-core repulsion = 17488.636175 eV Total energy + Delta-G solvation = -4069.392636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.18595 -48.70304 -48.65403 -40.93111 -40.16490 -36.40267 -35.62013 -33.47574 -32.62381 -32.14066 -28.69508 -26.72400 -25.16316 -23.96092 -22.31192 -21.73463 -19.95883 -19.54038 -19.47943 -19.38780 -19.03642 -16.93479 -16.65306 -16.62653 -16.06902 -15.81358 -15.67092 -15.50095 -15.37927 -15.17938 -15.11121 -14.90374 -14.81218 -14.77387 -14.44053 -13.85611 -13.69092 -13.43960 -13.31550 -12.90288 -12.35175 -12.27720 -12.20325 -12.07151 -11.52593 -11.00453 -10.18457 -10.14024 -10.07403 -9.76860 -8.38275 -5.86496 -0.23418 0.25725 1.42857 1.45081 1.59134 1.62994 2.09476 2.39641 2.40371 2.68563 2.74631 3.00097 3.32190 3.40268 3.59623 3.77450 3.87411 4.06866 4.24716 4.28476 4.60299 4.60403 4.77833 4.94570 5.09879 5.13249 5.44325 5.47619 5.67988 5.73964 5.80780 6.47799 6.86553 7.19955 7.75665 8.22941 8.81239 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036044 B = 0.002794 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.636648 B =10018.838471 C =10326.326342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.020 4.020 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.315 4.315 8 H 0.080 0.920 9 N -0.596 5.596 10 C 0.658 3.342 11 O -0.666 6.666 12 N -0.739 5.739 13 C 0.183 3.817 14 C -0.070 4.070 15 C -0.102 4.102 16 C -0.073 4.073 17 C -0.188 4.188 18 C 0.512 3.488 19 F -0.180 7.180 20 F -0.179 7.179 21 F -0.179 7.179 22 C -0.073 4.073 23 C -0.102 4.102 24 H 0.274 0.726 25 H 0.394 0.606 26 H 0.402 0.598 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 -20.967 -0.016 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.218 4.218 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.445 4.445 8 H 0.098 0.902 9 N -0.238 5.238 10 C 0.359 3.641 11 O -0.552 6.552 12 N -0.397 5.397 13 C 0.059 3.941 14 C -0.071 4.071 15 C -0.120 4.120 16 C -0.091 4.091 17 C -0.189 4.189 18 C 0.458 3.542 19 F -0.161 7.161 20 F -0.161 7.161 21 F -0.160 7.160 22 C -0.091 4.091 23 C -0.120 4.120 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.236 0.764 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.171 0.829 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.753 -20.837 -0.017 21.372 hybrid contribution -0.736 0.613 0.000 0.958 sum -5.489 -20.224 -0.016 20.955 Atomic orbital electron populations 1.69714 1.06711 1.28772 1.52102 1.25956 0.96594 1.02098 0.97179 0.84848 0.78022 0.77236 0.78082 1.19680 1.19888 1.19899 1.19585 0.92378 0.83131 1.49376 0.90207 1.40964 1.08725 1.03185 1.70900 1.16107 0.85183 0.81244 0.81609 1.90703 1.13907 1.87234 1.63341 1.44789 1.09425 1.03259 1.82257 1.19941 0.92289 0.79210 1.02627 1.20087 0.96810 0.95896 0.94310 1.21282 0.96484 0.95670 0.98579 1.21124 0.95271 0.95140 0.97522 1.20110 1.02646 0.99102 0.97085 1.18297 0.79944 0.82506 0.73413 1.93224 1.78621 1.48141 1.96156 1.93192 1.75118 1.96418 1.51322 1.93190 1.75343 1.96426 1.51090 1.21126 0.95297 0.95131 0.97507 1.21282 0.96457 0.95681 0.98597 0.91709 0.77194 0.76360 0.91481 0.91491 0.83484 0.82921 0.82922 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.83 13.05 21.66 0.28 -50.54 16 2 C -0.02 -1.08 5.50 84.90 0.47 -0.61 16 3 Si 0.99 43.30 29.55 68.60 2.03 45.32 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.31 -17.94 9.68 84.01 0.81 -17.12 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.60 -30.70 5.29 -320.70 -1.70 -32.40 16 10 C 0.66 31.36 8.52 179.05 1.53 32.88 16 11 O -0.67 -36.96 15.92 -3.96 -0.06 -37.02 16 12 N -0.74 -25.31 5.55 -482.31 -2.68 -27.99 16 13 C 0.18 5.08 5.80 85.63 0.50 5.57 16 14 C -0.07 -1.45 5.25 -19.87 -0.10 -1.56 16 15 C -0.10 -1.84 9.70 22.27 0.22 -1.62 16 16 C -0.07 -1.20 9.40 22.27 0.21 -0.99 16 17 C -0.19 -3.26 5.45 -19.86 -0.11 -3.37 16 18 C 0.51 9.00 3.36 71.24 0.24 9.24 16 19 F -0.18 -3.31 17.30 44.97 0.78 -2.54 16 20 F -0.18 -3.27 16.46 44.97 0.74 -2.53 16 21 F -0.18 -3.27 16.46 44.97 0.74 -2.53 16 22 C -0.07 -1.20 9.40 22.27 0.21 -0.99 16 23 C -0.10 -1.84 9.70 22.27 0.22 -1.63 16 24 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.39 19.35 7.91 -92.71 -0.73 18.62 16 26 H 0.40 11.86 8.48 -92.71 -0.79 11.08 16 27 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16 28 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 29 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.15 1.95 7.60 -2.91 -0.02 1.93 16 31 H 0.15 1.95 7.60 -2.91 -0.02 1.93 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -66.94 302.04 3.99 -62.95 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: -0.32 Total: 27.47 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 4.18 Total: 19.80 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.09 Total: -110.93 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.06 Total: -37.02 kcal Atomic # 9 Polarization: -9.85 SS G_CDS: 2.26 Total: -7.60 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.94 3.99 -62.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260760326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.631 kcal (2) G-P(sol) polarization free energy of solvation -66.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds