Wall clock time and date at job start Tue Mar 31 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48498 * 109.47062 * 239.99793 * 3 2 1 5 5 H 1.48505 * 109.47337 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47130 * 119.99819 * 3 2 1 7 7 C 1.39945 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00051 * 197.84871 * 7 2 1 9 9 C 1.41392 * 119.99829 * 17.84574 * 7 2 1 10 10 C 1.40715 * 120.24786 * 204.38409 * 9 7 2 11 11 C 1.37616 * 119.75074 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24523 * 0.02899 * 11 10 9 13 13 C 1.50701 * 119.74956 * 179.97438 * 12 11 10 14 14 O 1.45200 * 109.47044 * 89.99732 * 13 12 11 15 15 C 1.34226 * 116.99925 * 180.02562 * 14 13 12 16 16 O 1.20830 * 120.00091 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00011 * 179.97438 * 15 14 13 18 18 C 1.53004 * 109.47047 * 179.97438 * 17 15 14 19 19 F 1.39900 * 109.47002 * 59.99914 * 18 17 15 20 20 F 1.39896 * 109.46962 * 179.97438 * 18 17 15 21 21 F 1.39901 * 109.46862 * 300.00109 * 18 17 15 22 22 C 1.38633 * 120.50204 * 0.24424 * 12 11 10 23 23 C 1.37626 * 120.24985 * 359.45268 * 22 12 11 24 24 H 0.97002 * 120.00394 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.12445 * 0.02562 * 10 9 7 26 26 H 1.07993 * 119.88115 * 179.97438 * 11 10 9 27 27 H 1.09004 * 109.47041 * 329.99964 * 13 12 11 28 28 H 1.08998 * 109.47265 * 209.99502 * 13 12 11 29 29 H 1.09000 * 109.46971 * 299.99646 * 17 15 14 30 30 H 1.08993 * 109.47102 * 59.99734 * 17 15 14 31 31 H 1.07996 * 119.87768 * 179.70605 * 22 12 11 32 32 H 1.07992 * 120.12680 * 180.27380 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2342 0.2872 9 6 1.3522 -2.4071 -0.3742 10 6 1.8259 -3.6498 0.0856 11 6 1.1800 -4.8068 -0.2859 12 6 0.0669 -4.7512 -1.1104 13 6 -0.6316 -6.0252 -1.5108 14 8 -1.6654 -6.3361 -0.5397 15 6 -2.3857 -7.4487 -0.7517 16 8 -2.1602 -8.1397 -1.7169 17 6 -3.4757 -7.8360 0.2142 18 6 -4.1366 -9.1334 -0.2561 19 9 -3.1785 -10.1514 -0.3109 20 9 -5.1480 -9.4933 0.6409 21 9 -4.6868 -8.9419 -1.5280 22 6 -0.4053 -3.5330 -1.5740 23 6 0.2211 -2.3628 -1.2102 24 1 -0.4851 0.8400 -0.0004 25 1 2.6932 -3.6954 0.7276 26 1 1.5421 -5.7616 0.0654 27 1 0.0913 -6.8403 -1.5455 28 1 -1.0835 -5.8981 -2.4945 29 1 -3.0470 -7.9848 1.2052 30 1 -4.2223 -7.0431 0.2566 31 1 -1.2705 -3.5018 -2.2196 32 1 -0.1511 -1.4146 -1.5689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271848464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:00 Heat of formation + Delta-G solvation = -244.823343 kcal Electronic energy + Delta-G solvation = -21743.665210 eV Core-core repulsion = 17639.107373 eV Total energy + Delta-G solvation = -4104.557837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.15431 -48.66438 -48.62193 -41.56956 -39.49762 -37.66018 -35.69466 -33.33831 -32.41109 -31.22343 -28.98395 -26.13252 -24.99327 -22.95452 -22.31896 -21.81018 -19.92241 -19.64084 -19.26637 -18.72131 -18.29757 -17.64588 -17.32385 -16.96891 -15.90488 -15.72071 -15.61381 -15.41444 -15.38522 -15.02926 -14.78763 -14.74205 -14.40286 -14.31668 -13.92452 -13.83124 -13.56699 -13.43231 -13.09781 -12.84900 -12.70000 -12.59519 -12.13170 -11.86335 -11.72031 -11.48515 -11.28547 -11.03961 -9.43837 -9.33455 -8.68906 -6.39933 0.67339 0.99103 1.11666 1.29860 1.39871 1.50710 1.55627 1.90358 2.19623 2.61598 2.68266 2.98492 3.14844 3.61362 3.79817 4.05349 4.06937 4.12850 4.23459 4.47837 4.50677 4.55877 5.01542 5.11843 5.30483 5.37143 5.40876 5.65293 5.88348 6.05750 6.14247 6.32402 6.53227 6.64549 6.88564 6.97243 8.27331 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.039944 B = 0.002874 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.808026 B = 9740.451761 C = 9976.599232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.089 3.911 10 C -0.246 4.246 11 C -0.064 4.064 12 C -0.233 4.233 13 C 0.141 3.859 14 O -0.350 6.350 15 C 0.461 3.539 16 O -0.531 6.531 17 C -0.160 4.160 18 C 0.470 3.530 19 F -0.186 7.186 20 F -0.171 7.171 21 F -0.187 7.187 22 C -0.079 4.079 23 C -0.195 4.195 24 H 0.291 0.709 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.183 0.817 30 H 0.181 0.819 31 H 0.108 0.892 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 -10.564 1.795 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.265 4.265 11 C -0.082 4.082 12 C -0.234 4.234 13 C 0.069 3.931 14 O -0.267 6.267 15 C 0.304 3.696 16 O -0.421 6.421 17 C -0.197 4.197 18 C 0.416 3.584 19 F -0.168 7.168 20 F -0.152 7.152 21 F -0.168 7.168 22 C -0.098 4.098 23 C -0.214 4.214 24 H 0.102 0.898 25 H 0.120 0.880 26 H 0.138 0.862 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.201 0.799 30 H 0.199 0.801 31 H 0.126 0.874 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.681 -10.622 1.496 13.193 hybrid contribution 0.269 0.546 -0.219 0.647 sum -7.411 -10.076 1.278 12.573 Atomic orbital electron populations 1.69858 1.09051 1.30961 1.34237 1.26796 0.95500 1.04624 0.91071 0.85230 0.78809 0.75470 0.80116 1.18526 1.19112 1.18265 1.19926 0.98571 0.92478 1.41301 0.90225 1.18038 0.91555 0.93178 0.88623 1.21179 1.04789 0.92876 1.07692 1.20726 0.94733 0.97316 0.95406 1.18978 1.01101 0.92755 1.10592 1.21649 0.86893 0.94927 0.89603 1.86653 1.46097 1.41074 1.52856 1.23334 0.82137 0.78967 0.85116 1.90749 1.67880 1.52574 1.30868 1.22734 0.98437 0.96254 1.02306 1.19931 0.76908 0.86393 0.75172 1.93210 1.64006 1.63349 1.96187 1.93227 1.61543 1.92928 1.67524 1.93211 1.86398 1.95197 1.42015 1.20792 0.97994 0.92319 0.98659 1.21272 1.00598 0.96985 1.02553 0.89826 0.87969 0.86238 0.90503 0.91026 0.79926 0.80124 0.87422 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.09 10.95 21.83 0.24 -40.86 16 2 C 0.04 1.77 5.14 85.26 0.44 2.20 16 3 Si 0.98 36.54 29.59 68.60 2.03 38.57 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.49 -25.76 9.05 23.46 0.21 -25.54 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.09 4.64 5.57 -21.29 -0.12 4.52 16 10 C -0.25 -11.62 9.80 22.73 0.22 -11.40 16 11 C -0.06 -2.66 9.67 22.22 0.21 -2.44 16 12 C -0.23 -9.55 5.54 -19.67 -0.11 -9.65 16 13 C 0.14 4.77 5.58 71.24 0.40 5.16 16 14 O -0.35 -10.86 10.20 -51.38 -0.52 -11.39 16 15 C 0.46 12.09 7.73 71.24 0.55 12.64 16 16 O -0.53 -17.13 14.58 21.95 0.32 -16.81 16 17 C -0.16 -2.47 5.86 29.85 0.18 -2.30 16 18 C 0.47 9.14 2.89 71.98 0.21 9.35 16 19 F -0.19 -4.40 16.40 44.97 0.74 -3.66 16 20 F -0.17 -2.92 17.32 44.97 0.78 -2.14 16 21 F -0.19 -4.48 16.40 44.97 0.74 -3.74 16 22 C -0.08 -3.54 9.67 22.22 0.21 -3.32 16 23 C -0.19 -9.93 8.70 22.73 0.20 -9.73 16 24 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 25 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 27 H 0.08 2.41 8.07 -2.38 -0.02 2.40 16 28 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 29 H 0.18 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.18 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 Total: -1.00 -61.80 300.94 8.09 -53.72 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.16 Total: 16.82 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 2.60 Total: -30.51 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.24 Total: -40.86 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.20 Total: -28.19 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 2.25 Total: -9.54 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -61.80 8.09 -53.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271848464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.105 kcal (2) G-P(sol) polarization free energy of solvation -61.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds