Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48507 * 109.47243 * 270.00112 * 3 2 1 5 5 H 1.48505 * 109.47175 * 30.00025 * 3 2 1 6 6 H 1.48496 * 109.47465 * 150.00027 * 3 2 1 7 7 C 1.37882 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46753 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47087 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47166 * 179.97438 * 11 10 9 13 13 O 1.42096 * 109.47112 * 63.60950 * 12 11 10 14 14 C 1.81401 * 102.99785 * 179.97438 * 12 11 10 15 15 C 1.50703 * 109.47002 * 179.97438 * 14 12 11 16 16 C 1.38426 * 120.02147 * 269.72515 * 15 14 12 17 17 F 1.35095 * 120.01587 * 359.97438 * 16 15 14 18 18 C 1.38471 * 119.96696 * 179.70198 * 16 15 14 19 19 C 1.38210 * 120.03121 * 0.59234 * 18 16 15 20 20 C 1.38212 * 120.04721 * 359.68551 * 19 18 16 21 21 C 1.38411 * 120.02675 * 89.99783 * 15 14 12 22 22 F 1.35103 * 120.01334 * 359.97438 * 21 15 14 23 23 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46963 * 60.00231 * 9 7 2 25 25 H 1.09000 * 109.47044 * 300.00531 * 9 7 2 26 26 H 1.08991 * 109.47570 * 59.99941 * 10 9 7 27 27 H 1.09000 * 109.47250 * 299.99483 * 10 9 7 28 28 H 1.09004 * 109.46969 * 59.99743 * 11 10 9 29 29 H 1.09000 * 109.46704 * 300.00247 * 11 10 9 30 30 H 1.09002 * 109.47085 * 299.99903 * 14 12 11 31 31 H 1.09001 * 109.47417 * 60.00029 * 14 12 11 32 32 H 1.08006 * 119.98621 * 180.31921 * 18 16 15 33 33 H 1.07994 * 119.97759 * 179.70325 * 19 18 16 34 34 H 1.07998 * 119.98507 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.4194 -6.3396 1.1981 14 6 1.5805 -7.8246 -0.0019 15 6 2.4245 -9.0732 -0.0031 16 6 2.8067 -9.6496 -1.2022 17 9 2.4229 -9.0935 -2.3720 18 6 3.5873 -10.7933 -1.2021 19 6 3.9746 -11.3663 -0.0054 20 6 3.5887 -10.7948 1.1924 21 6 2.8133 -9.6476 1.1947 22 9 2.4368 -9.0888 2.3657 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8718 -3.6044 0.8893 27 1 2.8718 -3.6044 -0.8906 28 1 0.8537 -5.0446 -0.8914 29 1 0.8532 -5.0450 0.8886 30 1 0.9517 -7.8115 0.8884 31 1 0.9510 -7.8112 -0.8916 32 1 3.8899 -11.2404 -2.1375 33 1 4.5793 -12.2610 -0.0063 34 1 3.8923 -11.2432 2.1269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272453705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = -119.209448 kcal Electronic energy + Delta-G solvation = -19715.159941 eV Core-core repulsion = 16182.262307 eV Total energy + Delta-G solvation = -3532.897634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.25569 -49.15979 -39.14407 -35.49064 -34.43479 -33.26517 -32.02369 -30.61070 -27.83236 -27.24478 -23.51538 -23.17520 -22.29267 -20.27572 -18.41974 -17.64395 -17.39230 -16.55027 -16.26856 -16.19510 -15.83848 -15.47539 -15.01470 -14.85256 -14.65240 -14.46706 -14.37747 -13.59292 -13.51378 -13.04245 -12.47238 -12.38075 -12.24517 -12.02965 -11.83668 -11.68712 -11.41448 -10.86467 -10.81693 -10.70029 -10.32733 -9.79610 -9.56743 -9.16199 -9.07271 -8.84169 -8.35444 -7.99576 -6.00395 -4.03026 0.53244 0.64098 1.69673 2.75199 3.06615 3.32679 3.38755 3.43126 3.58427 3.85264 4.09653 4.16876 4.34004 4.46316 4.46818 4.79669 5.05320 5.26995 5.35262 5.46162 5.55498 5.57938 5.59739 5.62717 5.69452 5.79850 6.18516 6.42605 6.50470 6.69316 7.03950 7.65766 7.78169 7.98962 8.40725 9.03885 9.61186 11.10912 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035564 B = 0.003101 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.131308 B = 9028.317925 C = 9318.921106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.093 4.093 11 C -0.431 4.431 12 S 1.232 4.768 13 O -0.836 6.836 14 C -0.419 4.419 15 C -0.131 4.131 16 C 0.132 3.868 17 F -0.123 7.123 18 C -0.162 4.162 19 C -0.067 4.067 20 C -0.162 4.162 21 C 0.135 3.865 22 F -0.124 7.124 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.014 0.986 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.133 0.867 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -25.493 -4.858 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.570 4.570 12 S 1.432 4.568 13 O -0.831 6.831 14 C -0.552 4.552 15 C -0.134 4.134 16 C 0.111 3.889 17 F -0.101 7.101 18 C -0.181 4.181 19 C -0.085 4.085 20 C -0.181 4.181 21 C 0.114 3.886 22 F -0.102 7.102 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.671 -25.317 -4.821 26.621 hybrid contribution -1.297 1.138 1.885 2.556 sum 5.374 -24.179 -2.936 24.942 Atomic orbital electron populations 1.69968 1.06093 1.26640 1.50877 1.25034 0.94869 0.99324 0.95266 0.86574 0.79880 0.83317 0.78138 1.20549 1.21244 1.19820 1.21276 0.93169 0.91016 1.50624 0.92510 1.19097 0.93792 0.90869 0.97385 1.21326 0.98995 0.91754 1.01159 1.27661 1.11496 1.10554 1.07321 1.70868 0.88044 0.85448 1.12445 1.93122 1.55605 1.83551 1.50809 1.26723 1.10117 1.09216 1.09151 1.19200 1.03702 0.98763 0.91701 1.17119 0.97874 0.93489 0.80407 1.91541 1.89140 1.84587 1.44840 1.21207 1.00553 0.95961 1.00360 1.20854 0.97843 0.99356 0.90490 1.21230 1.00445 0.95918 1.00501 1.17301 0.97422 0.93071 0.80813 1.91565 1.89124 1.84484 1.45008 0.92985 0.96199 0.96717 0.92755 0.92062 0.86677 0.89893 0.87895 0.84853 0.83650 0.83805 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.95 5.16 -26.73 -0.14 -2.09 16 11 C -0.43 -7.08 5.92 37.16 0.22 -6.86 16 12 S 1.23 17.20 13.14 -107.50 -1.41 15.79 16 13 O -0.84 -16.67 18.14 -35.23 -0.64 -17.31 16 14 C -0.42 -4.94 5.70 36.01 0.21 -4.73 16 15 C -0.13 -1.52 5.15 -104.49 -0.54 -2.06 16 16 C 0.13 1.26 7.24 -39.43 -0.29 0.97 16 17 F -0.12 -1.14 16.47 2.25 0.04 -1.10 16 18 C -0.16 -1.16 10.02 -39.51 -0.40 -1.56 16 19 C -0.07 -0.44 10.04 -39.60 -0.40 -0.84 16 20 C -0.16 -1.44 10.03 -39.50 -0.40 -1.83 16 21 C 0.13 1.65 7.24 -39.43 -0.29 1.36 16 22 F -0.12 -1.84 16.48 2.25 0.04 -1.81 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.11 1.58 8.14 -51.92 -0.42 1.16 16 29 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 30 H 0.10 1.31 7.64 -51.92 -0.40 0.91 16 31 H 0.13 1.20 7.63 -51.92 -0.40 0.81 16 32 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 33 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -36.39 318.77 -8.16 -44.55 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -4.14 Total: -4.41 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -2.56 Total: -30.90 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.64 Total: -17.31 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.07 Total: -2.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 17.20 SS G_CDS: -1.41 Total: 15.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.39 -8.16 -44.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272453705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.660 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds