Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48507 * 109.47243 * 270.00112 * 3 2 1 5 5 H 1.48505 * 109.47175 * 30.00025 * 3 2 1 6 6 H 1.48496 * 109.47465 * 150.00027 * 3 2 1 7 7 C 1.37882 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46753 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47087 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47166 * 179.97438 * 11 10 9 13 13 O 1.42096 * 109.47112 * 63.60950 * 12 11 10 14 14 C 1.81401 * 102.99785 * 179.97438 * 12 11 10 15 15 C 1.50703 * 109.47002 * 179.97438 * 14 12 11 16 16 C 1.38426 * 120.02147 * 269.72515 * 15 14 12 17 17 F 1.35095 * 120.01587 * 359.97438 * 16 15 14 18 18 C 1.38471 * 119.96696 * 179.70198 * 16 15 14 19 19 C 1.38210 * 120.03121 * 0.59234 * 18 16 15 20 20 C 1.38212 * 120.04721 * 359.68551 * 19 18 16 21 21 C 1.38411 * 120.02675 * 89.99783 * 15 14 12 22 22 F 1.35103 * 120.01334 * 359.97438 * 21 15 14 23 23 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46963 * 60.00231 * 9 7 2 25 25 H 1.09000 * 109.47044 * 300.00531 * 9 7 2 26 26 H 1.08991 * 109.47570 * 59.99941 * 10 9 7 27 27 H 1.09000 * 109.47250 * 299.99483 * 10 9 7 28 28 H 1.09004 * 109.46969 * 59.99743 * 11 10 9 29 29 H 1.09000 * 109.46704 * 300.00247 * 11 10 9 30 30 H 1.09002 * 109.47085 * 299.99903 * 14 12 11 31 31 H 1.09001 * 109.47417 * 60.00029 * 14 12 11 32 32 H 1.08006 * 119.98621 * 180.31921 * 18 16 15 33 33 H 1.07994 * 119.97759 * 179.70325 * 19 18 16 34 34 H 1.07998 * 119.98507 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 8 3.4194 -6.3396 1.1981 14 6 1.5805 -7.8246 -0.0019 15 6 2.4245 -9.0732 -0.0031 16 6 2.8067 -9.6496 -1.2022 17 9 2.4229 -9.0935 -2.3720 18 6 3.5873 -10.7933 -1.2021 19 6 3.9746 -11.3663 -0.0054 20 6 3.5887 -10.7948 1.1924 21 6 2.8133 -9.6476 1.1947 22 9 2.4368 -9.0888 2.3657 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8718 -3.6044 0.8893 27 1 2.8718 -3.6044 -0.8906 28 1 0.8537 -5.0446 -0.8914 29 1 0.8532 -5.0450 0.8886 30 1 0.9517 -7.8115 0.8884 31 1 0.9510 -7.8112 -0.8916 32 1 3.8899 -11.2404 -2.1375 33 1 4.5793 -12.2610 -0.0063 34 1 3.8923 -11.2432 2.1269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272453705.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = -143.060017 kcal Electronic energy + Delta-G solvation = -19716.194180 eV Core-core repulsion = 16182.262307 eV Total energy + Delta-G solvation = -3533.931872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.12424 -49.95009 -39.82738 -36.90759 -36.34744 -34.08194 -34.02372 -31.27938 -29.52839 -28.32910 -25.42495 -23.88877 -23.15704 -22.04239 -19.19306 -18.76504 -18.43849 -18.31327 -17.32252 -17.01142 -16.62187 -16.60474 -16.36535 -16.29859 -16.01697 -15.60044 -15.39983 -14.80376 -14.55201 -14.32490 -13.91518 -13.75649 -13.55777 -13.17600 -12.98866 -12.73841 -12.69409 -12.55715 -12.50022 -12.40947 -11.92955 -11.64961 -11.35851 -11.07579 -10.58267 -9.93333 -9.76902 -9.21362 -8.23050 -6.34829 -0.24516 -0.04739 0.61360 1.38569 1.40538 1.51711 1.59246 2.38981 2.39339 2.70289 2.85554 3.09808 3.31795 3.39516 3.58891 3.88609 3.98628 4.12103 4.21233 4.24098 4.49486 4.57428 4.79534 4.81595 4.85409 5.00804 5.05723 5.08431 5.14245 5.20020 5.46549 5.65862 5.76885 5.80335 6.20329 6.81615 7.34645 8.88697 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035564 B = 0.003101 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.131308 B = 9028.317925 C = 9318.921106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.088 4.088 11 C -0.436 4.436 12 S 1.289 4.711 13 O -0.899 6.899 14 C -0.410 4.410 15 C -0.157 4.157 16 C 0.127 3.873 17 F -0.122 7.122 18 C -0.150 4.150 19 C -0.050 4.050 20 C -0.164 4.164 21 C 0.093 3.907 22 F -0.152 7.152 23 H 0.265 0.735 24 H 0.009 0.991 25 H -0.020 1.020 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.165 0.835 32 H 0.181 0.819 33 H 0.188 0.812 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.398 -27.425 -6.822 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.127 4.127 11 C -0.574 4.574 12 S 1.491 4.509 13 O -0.895 6.895 14 C -0.545 4.545 15 C -0.160 4.160 16 C 0.106 3.894 17 F -0.100 7.100 18 C -0.168 4.168 19 C -0.068 4.068 20 C -0.182 4.182 21 C 0.073 3.927 22 F -0.130 7.130 23 H 0.073 0.927 24 H 0.028 0.972 25 H -0.002 1.002 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.164 0.836 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.183 0.817 32 H 0.198 0.802 33 H 0.205 0.795 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.201 -27.217 -6.788 29.225 hybrid contribution -1.798 1.523 2.448 3.398 sum 6.403 -25.693 -4.340 26.833 Atomic orbital electron populations 1.70096 1.07816 1.27878 1.51578 1.26013 0.95831 1.03475 0.94571 0.85421 0.78461 0.78167 0.78866 1.18964 1.20793 1.19107 1.21744 0.93686 0.92472 1.50809 0.92117 1.19017 0.94275 0.92661 0.95105 1.21127 0.98062 0.92206 1.01290 1.27674 1.11956 1.09791 1.07981 1.70061 0.86437 0.84505 1.09911 1.93008 1.58616 1.84795 1.53073 1.26569 1.09791 1.08064 1.10122 1.19261 1.05050 0.99081 0.92630 1.17283 0.98285 0.94223 0.79641 1.91546 1.89210 1.84729 1.44501 1.21691 0.98521 0.94458 1.02140 1.21390 0.96512 0.99829 0.89088 1.21578 0.99393 0.94758 1.02505 1.17847 0.99702 0.94976 0.80223 1.91489 1.89767 1.85225 1.46539 0.92674 0.97238 1.00178 0.94982 0.89534 0.83614 0.91728 0.89229 0.81705 0.80183 0.79519 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -32.33 9.11 25.60 0.23 -32.09 16 8 H 0.06 3.43 7.74 -2.92 -0.02 3.41 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.09 -3.79 5.16 30.60 0.16 -3.63 16 11 C -0.44 -14.56 5.92 71.98 0.43 -14.13 16 12 S 1.29 36.12 13.14 -56.49 -0.74 35.38 16 13 O -0.90 -37.19 18.14 -148.98 -2.70 -39.90 16 14 C -0.41 -9.48 5.70 71.24 0.41 -9.07 16 15 C -0.16 -3.51 5.15 -19.78 -0.10 -3.61 16 16 C 0.13 2.09 7.24 22.37 0.16 2.25 16 17 F -0.12 -1.91 16.47 44.97 0.74 -1.17 16 18 C -0.15 -1.52 10.02 22.32 0.22 -1.30 16 19 C -0.05 -0.45 10.04 22.26 0.22 -0.23 16 20 C -0.16 -2.58 10.03 22.32 0.22 -2.36 16 21 C 0.09 2.26 7.24 22.37 0.16 2.43 16 22 F -0.15 -4.77 16.48 44.97 0.74 -4.03 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 25 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 3.22 8.14 -2.39 -0.02 3.21 16 28 H 0.15 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 2.35 7.64 -2.39 -0.02 2.33 16 31 H 0.17 2.67 7.63 -2.39 -0.02 2.65 16 32 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -82.96 318.77 4.18 -78.78 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.10 Total: 1.04 kcal Atomic # 6 Polarization: -62.42 SS G_CDS: 2.73 Total: -59.69 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.28 Total: -57.62 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -2.70 Total: -39.90 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.48 Total: -5.20 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 36.12 SS G_CDS: -0.74 Total: 35.38 kcal Total: -82.96 4.18 -78.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272453705.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.285 kcal (2) G-P(sol) polarization free energy of solvation -82.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds