Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99701 * 2 1 4 4 H 1.48501 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46882 * 299.99758 * 3 2 1 6 6 H 1.48498 * 109.47117 * 59.99914 * 3 2 1 7 7 C 1.37869 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47346 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46771 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99847 * 180.02562 * 11 10 9 13 13 O 1.21600 * 119.99598 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00263 * 179.97438 * 12 11 10 15 15 C 1.40186 * 120.00097 * 175.53917 * 14 12 11 16 16 C 1.38796 * 120.04154 * 34.64156 * 15 14 12 17 17 C 1.38170 * 120.01657 * 179.97438 * 16 15 14 18 18 C 1.38429 * 120.10218 * 359.97438 * 17 16 15 19 19 F 1.35106 * 119.95575 * 180.02562 * 18 17 16 20 20 C 1.38636 * 120.08690 * 0.02562 * 18 17 16 21 21 F 1.35096 * 120.01200 * 179.97438 * 20 18 17 22 22 C 1.38487 * 119.98116 * 359.74474 * 20 18 17 23 23 F 1.35095 * 120.05638 * 180.27213 * 22 20 18 24 24 H 0.97003 * 119.99789 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46911 * 59.99676 * 9 7 2 26 26 H 1.09004 * 109.47076 * 299.99872 * 9 7 2 27 27 H 1.09005 * 109.47035 * 60.00358 * 10 9 7 28 28 H 1.09000 * 109.47375 * 299.99646 * 10 9 7 29 29 H 0.97000 * 120.00276 * 0.02562 * 11 10 9 30 30 H 0.96997 * 119.99300 * 355.26628 * 14 12 11 31 31 H 1.08001 * 119.99433 * 0.02562 * 16 15 14 32 32 H 1.08003 * 119.95234 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 2.1868 -6.0980 0.0003 13 8 3.4028 -6.0979 0.0007 14 7 1.5129 -7.2652 0.0003 15 6 2.2107 -8.4774 -0.0937 16 6 3.4572 -8.6097 0.5024 17 6 4.1443 -9.8049 0.4099 18 6 3.5913 -10.8723 -0.2765 19 9 4.2655 -12.0397 -0.3647 20 6 2.3466 -10.7448 -0.8735 21 9 1.8086 -11.7873 -1.5435 22 6 1.6527 -9.5501 -0.7790 23 9 0.4373 -9.4260 -1.3555 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8906 28 1 2.8721 -3.6043 -0.8895 29 1 0.5429 -4.9308 -0.0008 30 1 0.5454 -7.2665 0.0693 31 1 3.8898 -7.7785 1.0394 32 1 5.1139 -9.9068 0.8745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273239793.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -140.245614 kcal Electronic energy + Delta-G solvation = -21605.400088 eV Core-core repulsion = 17537.669832 eV Total energy + Delta-G solvation = -4067.730256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.98397 -49.39080 -48.67226 -40.66906 -38.62266 -35.29889 -34.70621 -32.96050 -30.86031 -30.26211 -28.81770 -25.02246 -23.75884 -23.31534 -21.25788 -20.92085 -19.12256 -18.57110 -18.23522 -17.65051 -16.99583 -16.63825 -16.41048 -15.91643 -15.72456 -15.45842 -15.13607 -14.88703 -14.68226 -14.57124 -14.55370 -13.82355 -13.69215 -13.22485 -12.68817 -12.37754 -12.28614 -12.09418 -11.29464 -11.13408 -10.69534 -10.63517 -10.42688 -10.17858 -9.69900 -9.35076 -9.23004 -8.83237 -8.51183 -8.34132 -6.16289 -4.19567 0.41330 0.45454 2.37113 2.76217 3.12851 3.24253 3.25666 3.32361 3.36956 3.83760 3.91478 4.16422 4.23750 4.36289 4.40270 4.88231 5.17649 5.21290 5.41415 5.63175 5.76710 5.99076 6.07023 6.22837 6.44234 6.60081 6.69233 6.78495 7.44069 7.51378 7.81735 7.95496 8.19594 8.52577 8.86577 9.45960 10.95300 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.041631 B = 0.002754 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.415156 B =10164.903212 C =10700.490370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.137 3.863 11 N -0.725 5.725 12 C 0.700 3.300 13 O -0.576 6.576 14 N -0.687 5.687 15 C 0.169 3.831 16 C -0.077 4.077 17 C -0.111 4.111 18 C 0.072 3.928 19 F -0.123 7.123 20 C 0.053 3.947 21 F -0.117 7.117 22 C 0.059 3.941 23 F -0.118 7.118 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.398 0.602 30 H 0.413 0.587 31 H 0.172 0.828 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -20.763 1.274 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.015 3.985 11 N -0.378 5.378 12 C 0.401 3.599 13 O -0.454 6.454 14 N -0.335 5.335 15 C 0.070 3.930 16 C -0.097 4.097 17 C -0.130 4.130 18 C 0.051 3.949 19 F -0.102 7.102 20 C 0.031 3.969 21 F -0.096 7.096 22 C 0.035 3.965 23 F -0.097 7.097 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.232 0.768 30 H 0.249 0.751 31 H 0.189 0.811 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.759 -20.546 1.207 20.922 hybrid contribution -0.914 0.512 -0.345 1.103 sum 2.846 -20.034 0.862 20.253 Atomic orbital electron populations 1.69962 1.06114 1.26885 1.50257 1.24998 0.94902 0.99487 0.94891 0.86445 0.80163 0.83238 0.77660 1.19529 1.20911 1.20904 1.21053 0.93313 0.90217 1.51517 0.92086 1.19348 0.94234 0.90987 0.97991 1.21752 0.95801 0.79783 1.01131 1.45614 1.10325 1.05017 1.76836 1.15986 0.85666 0.80114 0.78178 1.90900 1.11247 1.85965 1.57261 1.42641 1.10632 1.02910 1.77273 1.17300 0.94174 0.84662 0.96824 1.21336 0.92811 0.97971 0.97598 1.21107 1.01759 0.90831 0.99349 1.17337 0.90355 0.84131 1.03106 1.91550 1.78884 1.45064 1.94670 1.17214 0.93349 0.85211 1.01127 1.91555 1.85485 1.54767 1.77744 1.17035 0.84411 0.93926 1.01104 1.91541 1.39719 1.96191 1.82216 0.92824 0.95847 0.95830 0.92222 0.92274 0.76837 0.75084 0.81060 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.89 9.11 -34.44 -0.31 -14.21 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.14 2.68 5.61 -4.04 -0.02 2.65 16 11 N -0.73 -11.25 5.56 -65.22 -0.36 -11.62 16 12 C 0.70 10.55 8.41 -86.92 -0.73 9.82 16 13 O -0.58 -10.32 13.76 5.28 0.07 -10.25 16 14 N -0.69 -7.90 5.24 -14.15 -0.07 -7.98 16 15 C 0.17 1.92 6.32 -83.55 -0.53 1.39 16 16 C -0.08 -0.81 8.70 -39.40 -0.34 -1.15 16 17 C -0.11 -0.98 10.02 -39.54 -0.40 -1.37 16 18 C 0.07 0.73 7.30 -39.36 -0.29 0.44 16 19 F -0.12 -1.30 17.18 2.25 0.04 -1.26 16 20 C 0.05 0.59 7.31 -39.34 -0.29 0.30 16 21 F -0.12 -1.41 17.09 2.25 0.04 -1.37 16 22 C 0.06 0.66 7.31 -39.21 -0.29 0.37 16 23 F -0.12 -1.37 16.87 2.25 0.04 -1.33 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.40 5.22 8.49 -40.82 -0.35 4.87 16 30 H 0.41 3.66 8.68 -40.82 -0.35 3.30 16 31 H 0.17 1.99 6.19 -52.49 -0.32 1.67 16 32 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 300.51 15.07 4.53 4.53 Total: -1.00 -29.99 300.51 -6.12 -36.11 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -2.68 Total: 2.16 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.43 Total: -0.11 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.30 Total: -44.23 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.12 Total: -3.96 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.99 -6.12 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273239793.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.136 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds