Wall clock time and date at job start Tue Mar 31 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99701 * 2 1 4 4 H 1.48501 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46882 * 299.99758 * 3 2 1 6 6 H 1.48498 * 109.47117 * 59.99914 * 3 2 1 7 7 C 1.37869 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47346 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46771 * 180.02562 * 10 9 7 12 12 C 1.34778 * 119.99847 * 180.02562 * 11 10 9 13 13 O 1.21600 * 119.99598 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00263 * 179.97438 * 12 11 10 15 15 C 1.40186 * 120.00097 * 175.53917 * 14 12 11 16 16 C 1.38796 * 120.04154 * 34.64156 * 15 14 12 17 17 C 1.38170 * 120.01657 * 179.97438 * 16 15 14 18 18 C 1.38429 * 120.10218 * 359.97438 * 17 16 15 19 19 F 1.35106 * 119.95575 * 180.02562 * 18 17 16 20 20 C 1.38636 * 120.08690 * 0.02562 * 18 17 16 21 21 F 1.35096 * 120.01200 * 179.97438 * 20 18 17 22 22 C 1.38487 * 119.98116 * 359.74474 * 20 18 17 23 23 F 1.35095 * 120.05638 * 180.27213 * 22 20 18 24 24 H 0.97003 * 119.99789 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46911 * 59.99676 * 9 7 2 26 26 H 1.09004 * 109.47076 * 299.99872 * 9 7 2 27 27 H 1.09005 * 109.47035 * 60.00358 * 10 9 7 28 28 H 1.09000 * 109.47375 * 299.99646 * 10 9 7 29 29 H 0.97000 * 120.00276 * 0.02562 * 11 10 9 30 30 H 0.96997 * 119.99300 * 355.26628 * 14 12 11 31 31 H 1.08001 * 119.99433 * 0.02562 * 16 15 14 32 32 H 1.08003 * 119.95234 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9307 -0.0001 12 6 2.1868 -6.0980 0.0003 13 8 3.4028 -6.0979 0.0007 14 7 1.5129 -7.2652 0.0003 15 6 2.2107 -8.4774 -0.0937 16 6 3.4572 -8.6097 0.5024 17 6 4.1443 -9.8049 0.4099 18 6 3.5913 -10.8723 -0.2765 19 9 4.2655 -12.0397 -0.3647 20 6 2.3466 -10.7448 -0.8735 21 9 1.8086 -11.7873 -1.5435 22 6 1.6527 -9.5501 -0.7790 23 9 0.4373 -9.4260 -1.3555 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8906 28 1 2.8721 -3.6043 -0.8895 29 1 0.5429 -4.9308 -0.0008 30 1 0.5454 -7.2665 0.0693 31 1 3.8898 -7.7785 1.0394 32 1 5.1139 -9.9068 0.8745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273239793.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:18 Heat of formation + Delta-G solvation = -159.036607 kcal Electronic energy + Delta-G solvation = -21606.214926 eV Core-core repulsion = 17537.669832 eV Total energy + Delta-G solvation = -4068.545094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.86936 -50.25431 -49.55470 -41.77040 -39.62276 -36.74857 -35.84386 -34.83059 -31.79749 -31.69769 -30.01154 -26.76705 -24.71347 -24.31129 -22.88783 -22.14937 -20.15678 -19.53485 -19.19207 -18.66684 -18.35712 -17.86638 -17.59756 -16.87435 -16.70304 -16.52875 -16.47340 -16.12862 -16.03132 -15.57009 -15.49656 -15.25977 -15.07048 -14.29095 -14.19946 -13.62952 -13.23312 -13.19273 -12.95454 -12.90763 -12.49694 -12.25805 -11.70629 -11.56819 -11.42936 -11.21287 -10.59929 -10.13053 -10.07998 -9.33445 -8.22908 -6.32614 -0.42559 -0.39797 1.28516 1.42720 1.45065 1.57096 1.78379 2.18144 2.28585 2.42138 2.95968 3.02096 3.12756 3.12885 3.44913 3.52199 4.00041 4.33430 4.46270 4.54521 4.67764 4.81376 4.88177 4.91235 5.09869 5.24652 5.48451 5.55933 5.61403 5.71208 5.83343 6.17589 6.80422 6.84230 7.31892 7.37122 8.89082 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.041631 B = 0.002754 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.415156 B =10164.903212 C =10700.490370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.159 3.841 11 N -0.722 5.722 12 C 0.705 3.295 13 O -0.604 6.604 14 N -0.672 5.672 15 C 0.157 3.843 16 C -0.078 4.078 17 C -0.091 4.091 18 C 0.076 3.924 19 F -0.124 7.124 20 C 0.044 3.956 21 F -0.124 7.124 22 C 0.059 3.941 23 F -0.122 7.122 24 H 0.265 0.735 25 H 0.008 0.992 26 H 0.011 0.989 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.410 0.590 30 H 0.426 0.574 31 H 0.165 0.835 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -21.275 1.563 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.017 4.017 10 C 0.035 3.965 11 N -0.376 5.376 12 C 0.405 3.595 13 O -0.483 6.483 14 N -0.321 5.321 15 C 0.059 3.941 16 C -0.099 4.099 17 C -0.110 4.110 18 C 0.055 3.945 19 F -0.102 7.102 20 C 0.022 3.978 21 F -0.103 7.103 22 C 0.036 3.964 23 F -0.101 7.101 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.246 0.754 30 H 0.265 0.735 31 H 0.182 0.818 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.684 -21.107 1.496 21.672 hybrid contribution -1.204 0.567 -0.430 1.398 sum 3.480 -20.540 1.066 20.860 Atomic orbital electron populations 1.70063 1.07542 1.27868 1.51256 1.25849 0.95744 1.03064 0.94561 0.85423 0.79134 0.78937 0.77720 1.18736 1.20543 1.20397 1.21501 0.93726 0.91787 1.51121 0.91994 1.19156 0.94347 0.91696 0.96481 1.21198 0.94587 0.80221 1.00451 1.45260 1.10815 1.04198 1.77302 1.15925 0.85261 0.80543 0.77728 1.90885 1.12528 1.86498 1.58414 1.42350 1.11246 1.02022 1.76523 1.17397 0.94682 0.84372 0.97626 1.21334 0.92588 0.98416 0.97557 1.21334 1.02390 0.89373 0.97889 1.17405 0.89929 0.84347 1.02850 1.91554 1.78815 1.45216 1.94654 1.17357 0.93848 0.85040 1.01507 1.91536 1.85694 1.55067 1.77997 1.16976 0.84314 0.93913 1.01228 1.91530 1.39978 1.96219 1.82340 0.92636 0.97389 0.97101 0.92671 0.93188 0.75402 0.73532 0.81778 0.79428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.97 13.29 21.45 0.28 -52.68 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -28.94 9.11 25.60 0.23 -28.70 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 0.98 5.09 29.85 0.15 1.13 16 10 C 0.16 6.17 5.61 86.38 0.48 6.66 16 11 N -0.72 -21.91 5.56 -478.51 -2.66 -24.57 16 12 C 0.70 20.54 8.41 179.05 1.51 22.05 16 13 O -0.60 -21.08 13.76 -4.03 -0.06 -21.14 16 14 N -0.67 -14.64 5.24 -316.94 -1.66 -16.30 16 15 C 0.16 3.34 6.32 38.12 0.24 3.59 16 16 C -0.08 -1.52 8.70 22.39 0.19 -1.33 16 17 C -0.09 -1.37 10.02 22.30 0.22 -1.14 16 18 C 0.08 1.38 7.30 22.41 0.16 1.54 16 19 F -0.12 -2.36 17.18 44.97 0.77 -1.59 16 20 C 0.04 0.92 7.31 22.42 0.16 1.09 16 21 F -0.12 -2.87 17.09 44.97 0.77 -2.11 16 22 C 0.06 1.25 7.31 22.51 0.16 1.41 16 23 F -0.12 -2.71 16.87 44.97 0.76 -1.95 16 24 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.41 10.44 8.49 -92.71 -0.79 9.65 16 30 H 0.43 6.96 8.68 -92.71 -0.80 6.15 16 31 H 0.16 3.58 6.19 -2.91 -0.02 3.56 16 32 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -63.03 300.51 3.84 -59.19 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -0.38 Total: 9.68 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 3.99 Total: 7.11 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -4.04 Total: -93.55 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.14 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 2.30 Total: -5.64 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -63.03 3.84 -59.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273239793.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.844 kcal (2) G-P(sol) polarization free energy of solvation -63.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds