Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48495 * 109.47117 * 270.00209 * 3 2 1 5 5 H 1.48499 * 109.47048 * 30.00453 * 3 2 1 6 6 H 1.48500 * 109.46834 * 150.00099 * 3 2 1 7 7 C 1.37881 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00299 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47365 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00223 * 180.02562 * 11 10 9 13 13 O 1.21596 * 119.99886 * 359.72562 * 12 11 10 14 14 N 1.34771 * 120.00047 * 179.97438 * 12 11 10 15 15 C 1.40336 * 119.99548 * 174.87971 * 14 12 11 16 16 C 1.38956 * 120.05752 * 270.46905 * 15 14 12 17 17 F 1.35096 * 120.02884 * 359.97438 * 16 15 14 18 18 C 1.38347 * 119.93789 * 179.68451 * 16 15 14 19 19 C 1.38455 * 120.05742 * 0.61491 * 18 16 15 20 20 F 1.35106 * 119.94032 * 179.70745 * 19 18 16 21 21 C 1.38456 * 120.12177 * 359.68277 * 19 18 16 22 22 C 1.38343 * 120.05671 * 359.97438 * 21 19 18 23 23 F 1.35107 * 120.02883 * 180.02562 * 22 21 19 24 24 H 0.96998 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47468 * 59.99905 * 9 7 2 26 26 H 1.08999 * 109.47445 * 299.99773 * 9 7 2 27 27 H 1.08998 * 109.46495 * 60.00300 * 10 9 7 28 28 H 1.08991 * 109.47009 * 300.00115 * 10 9 7 29 29 H 0.97001 * 119.99748 * 0.02562 * 11 10 9 30 30 H 0.96992 * 120.00458 * 354.87882 * 14 12 11 31 31 H 1.07995 * 119.97158 * 180.30162 * 18 16 15 32 32 H 1.08003 * 119.97418 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.1865 -6.0981 -0.0037 13 8 3.4024 -6.0981 -0.0087 14 7 1.5126 -7.2652 -0.0036 15 6 2.2100 -8.4781 -0.1125 16 6 2.4711 -9.0208 -1.3648 17 9 2.0532 -8.3816 -2.4791 18 6 3.1646 -10.2133 -1.4695 19 6 3.5873 -10.8723 -0.3276 20 9 4.2592 -12.0398 -0.4324 21 6 3.3231 -10.3369 0.9216 22 6 2.6362 -9.1411 1.0318 23 9 2.3791 -8.6189 2.2511 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5576 0.8880 27 1 2.8718 -3.6052 0.8873 28 1 2.8718 -3.6036 -0.8926 29 1 0.5427 -4.9308 -0.0033 30 1 0.5456 -7.2669 0.0717 31 1 3.3720 -10.6331 -2.4427 32 1 3.6543 -10.8528 1.8108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273250245.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -140.300544 kcal Electronic energy + Delta-G solvation = -21810.630254 eV Core-core repulsion = 17742.897616 eV Total energy + Delta-G solvation = -4067.732638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.50341 -49.36579 -49.33821 -40.18790 -38.63245 -35.20693 -34.53627 -32.86502 -31.01224 -30.18672 -28.76851 -24.90001 -23.65238 -23.27125 -21.23937 -20.79438 -18.99848 -18.55220 -18.29196 -17.73065 -16.53517 -16.35047 -16.31778 -16.29350 -15.68457 -15.62989 -15.31811 -15.10227 -14.71196 -14.54215 -14.53243 -13.70141 -13.35111 -12.94741 -12.71332 -12.48763 -12.29624 -11.99207 -11.22226 -11.05528 -10.65027 -10.37681 -10.17799 -9.64494 -9.61150 -9.34460 -9.31264 -9.17527 -8.56945 -8.36999 -6.10602 -4.13388 0.29338 0.39874 2.53463 2.79192 3.11609 3.29267 3.30294 3.35503 3.39965 3.74360 3.80775 4.29782 4.33080 4.35292 4.48370 4.99159 5.23147 5.24783 5.26717 5.33252 5.45231 6.00012 6.18299 6.34150 6.51151 6.71917 6.85703 6.93808 7.52259 7.59963 7.88021 8.14583 8.28956 8.76307 8.92717 9.51511 11.01077 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036295 B = 0.002975 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.269178 B = 9410.565412 C = 9634.650412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.139 3.861 11 N -0.729 5.729 12 C 0.703 3.297 13 O -0.583 6.583 14 N -0.703 5.703 15 C 0.085 3.915 16 C 0.170 3.830 17 F -0.112 7.112 18 C -0.199 4.199 19 C 0.165 3.835 20 F -0.121 7.121 21 C -0.199 4.199 22 C 0.172 3.828 23 F -0.112 7.112 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.396 0.604 30 H 0.409 0.591 31 H 0.160 0.840 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -23.759 -0.474 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.382 5.382 12 C 0.404 3.596 13 O -0.459 6.459 14 N -0.359 5.359 15 C -0.011 4.011 16 C 0.148 3.852 17 F -0.090 7.090 18 C -0.219 4.219 19 C 0.145 3.855 20 F -0.099 7.099 21 C -0.219 4.219 22 C 0.150 3.850 23 F -0.090 7.090 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.230 0.770 30 H 0.247 0.753 31 H 0.177 0.823 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.565 -23.518 -0.485 23.662 hybrid contribution -0.532 0.943 0.027 1.082 sum 2.033 -22.575 -0.457 22.671 Atomic orbital electron populations 1.69951 1.06100 1.26909 1.50353 1.24994 0.94899 0.99430 0.94954 0.86499 0.79847 0.82931 0.78213 1.20545 1.21170 1.19692 1.21038 0.93288 0.90293 1.51405 0.92180 1.19332 0.94225 0.90964 0.97920 1.21690 0.95753 0.79987 1.00924 1.45505 1.10097 1.04948 1.77643 1.16042 0.85606 0.80142 0.77850 1.90930 1.11475 1.86191 1.57335 1.42340 1.09842 1.02107 1.81636 1.17117 1.03880 0.89545 0.90543 1.17232 0.95331 0.90653 0.81959 1.91590 1.87293 1.80745 1.49341 1.20984 1.04227 0.96333 1.00340 1.16761 0.93448 0.82771 0.92535 1.91576 1.77168 1.44360 1.96841 1.20989 1.05026 0.97218 0.98680 1.17225 0.95964 0.91622 0.80155 1.91590 1.91423 1.85926 1.40019 0.92827 0.95875 0.95862 0.92511 0.92494 0.77037 0.75289 0.82257 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.96 5.61 -4.04 -0.02 2.94 16 11 N -0.73 -12.75 5.56 -65.23 -0.36 -13.12 16 12 C 0.70 12.38 8.53 -86.92 -0.74 11.64 16 13 O -0.58 -12.61 16.32 5.28 0.09 -12.53 16 14 N -0.70 -9.22 4.94 -14.08 -0.07 -9.29 16 15 C 0.08 1.04 5.31 -83.43 -0.44 0.60 16 16 C 0.17 1.90 7.31 -39.28 -0.29 1.61 16 17 F -0.11 -1.39 17.07 2.25 0.04 -1.35 16 18 C -0.20 -1.73 10.00 -39.46 -0.39 -2.12 16 19 C 0.16 1.40 7.30 -39.42 -0.29 1.11 16 20 F -0.12 -1.01 17.26 2.25 0.04 -0.97 16 21 C -0.20 -1.73 10.00 -39.46 -0.39 -2.12 16 22 C 0.17 1.93 7.31 -39.28 -0.29 1.64 16 23 F -0.11 -1.39 17.08 2.25 0.04 -1.35 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.40 5.82 8.49 -40.82 -0.35 5.48 16 30 H 0.41 3.98 8.84 -40.82 -0.36 3.62 16 31 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -32.61 305.46 -6.11 -38.71 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -2.79 Total: 1.95 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.41 Total: 2.30 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.30 Total: -47.68 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.12 Total: -3.68 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.61 -6.11 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273250245.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.588 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds