Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48495 * 109.47117 * 270.00209 * 3 2 1 5 5 H 1.48499 * 109.47048 * 30.00453 * 3 2 1 6 6 H 1.48500 * 109.46834 * 150.00099 * 3 2 1 7 7 C 1.37881 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99956 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00299 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47365 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47252 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00223 * 180.02562 * 11 10 9 13 13 O 1.21596 * 119.99886 * 359.72562 * 12 11 10 14 14 N 1.34771 * 120.00047 * 179.97438 * 12 11 10 15 15 C 1.40336 * 119.99548 * 174.87971 * 14 12 11 16 16 C 1.38956 * 120.05752 * 270.46905 * 15 14 12 17 17 F 1.35096 * 120.02884 * 359.97438 * 16 15 14 18 18 C 1.38347 * 119.93789 * 179.68451 * 16 15 14 19 19 C 1.38455 * 120.05742 * 0.61491 * 18 16 15 20 20 F 1.35106 * 119.94032 * 179.70745 * 19 18 16 21 21 C 1.38456 * 120.12177 * 359.68277 * 19 18 16 22 22 C 1.38343 * 120.05671 * 359.97438 * 21 19 18 23 23 F 1.35107 * 120.02883 * 180.02562 * 22 21 19 24 24 H 0.96998 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47468 * 59.99905 * 9 7 2 26 26 H 1.08999 * 109.47445 * 299.99773 * 9 7 2 27 27 H 1.08998 * 109.46495 * 60.00300 * 10 9 7 28 28 H 1.08991 * 109.47009 * 300.00115 * 10 9 7 29 29 H 0.97001 * 119.99748 * 0.02562 * 11 10 9 30 30 H 0.96992 * 120.00458 * 354.87882 * 14 12 11 31 31 H 1.07995 * 119.97158 * 180.30162 * 18 16 15 32 32 H 1.08003 * 119.97418 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.1865 -6.0981 -0.0037 13 8 3.4024 -6.0981 -0.0087 14 7 1.5126 -7.2652 -0.0036 15 6 2.2100 -8.4781 -0.1125 16 6 2.4711 -9.0208 -1.3648 17 9 2.0532 -8.3816 -2.4791 18 6 3.1646 -10.2133 -1.4695 19 6 3.5873 -10.8723 -0.3276 20 9 4.2592 -12.0398 -0.4324 21 6 3.3231 -10.3369 0.9216 22 6 2.6362 -9.1411 1.0318 23 9 2.3791 -8.6189 2.2511 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5576 0.8880 27 1 2.8718 -3.6052 0.8873 28 1 2.8718 -3.6036 -0.8926 29 1 0.5427 -4.9308 -0.0033 30 1 0.5456 -7.2669 0.0717 31 1 3.3720 -10.6331 -2.4427 32 1 3.6543 -10.8528 1.8108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273250245.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -161.782907 kcal Electronic energy + Delta-G solvation = -21811.561799 eV Core-core repulsion = 17742.897616 eV Total energy + Delta-G solvation = -4068.664183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.26347 -50.24042 -50.18637 -41.44766 -39.61601 -36.76768 -35.85412 -34.83269 -31.79684 -31.77990 -30.01213 -26.75947 -24.45076 -24.34271 -22.93165 -22.23227 -19.91712 -19.79947 -19.12171 -18.83024 -18.42680 -17.34103 -17.19625 -17.07076 -16.61510 -16.52040 -16.51194 -16.46101 -16.36376 -15.82440 -15.44349 -15.27843 -15.03299 -14.30440 -13.80867 -13.66306 -13.23120 -13.21195 -12.94563 -12.80130 -12.52954 -12.26605 -11.78857 -11.57678 -11.32989 -10.84718 -10.60045 -10.11971 -10.02271 -10.00835 -8.24096 -6.34283 -0.52637 -0.37209 1.39590 1.43014 1.44710 1.55098 1.90971 1.93770 2.31427 2.41145 2.94366 3.02537 3.11044 3.14605 3.58083 3.62968 4.18053 4.42648 4.44755 4.46793 4.49581 4.52207 4.75833 4.84189 5.14887 5.23226 5.45781 5.56309 5.58361 5.71367 5.81786 6.16040 6.78537 6.89176 7.34910 7.38538 8.87857 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036295 B = 0.002975 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.269178 B = 9410.565412 C = 9634.650412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.159 3.841 11 N -0.724 5.724 12 C 0.705 3.295 13 O -0.624 6.624 14 N -0.686 5.686 15 C 0.059 3.941 16 C 0.156 3.844 17 F -0.123 7.123 18 C -0.182 4.182 19 C 0.173 3.827 20 F -0.115 7.115 21 C -0.183 4.183 22 C 0.157 3.843 23 F -0.123 7.123 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.410 0.590 30 H 0.425 0.575 31 H 0.185 0.815 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.247 -24.949 -0.572 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.378 5.378 12 C 0.405 3.595 13 O -0.504 6.504 14 N -0.342 5.342 15 C -0.036 4.036 16 C 0.134 3.866 17 F -0.101 7.101 18 C -0.202 4.202 19 C 0.153 3.847 20 F -0.093 7.093 21 C -0.202 4.202 22 C 0.136 3.864 23 F -0.101 7.101 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.246 0.754 30 H 0.266 0.734 31 H 0.202 0.798 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.171 -24.759 -0.582 24.968 hybrid contribution -0.733 1.171 0.051 1.383 sum 2.438 -23.588 -0.531 23.719 Atomic orbital electron populations 1.70053 1.07525 1.28015 1.50998 1.25860 0.95794 1.03068 0.94402 0.85444 0.78644 0.78451 0.78517 1.19777 1.20531 1.19043 1.21459 0.93641 0.91857 1.51565 0.92237 1.19130 0.94206 0.91491 0.96520 1.21163 0.94720 0.80640 0.99924 1.45171 1.10668 1.04081 1.77873 1.16104 0.85112 0.80913 0.77329 1.90894 1.13392 1.86945 1.59178 1.42038 1.10619 1.01317 1.80274 1.17397 1.05322 0.89251 0.91612 1.17339 0.96416 0.91624 0.81211 1.91561 1.87619 1.81169 1.49772 1.21199 1.02319 0.95005 1.01707 1.16714 0.92919 0.82705 0.92318 1.91604 1.76935 1.43966 1.96790 1.21202 1.03185 0.95991 0.99865 1.17339 0.97049 0.92613 0.79423 1.91560 1.91699 1.86281 1.40582 0.92529 0.97169 0.97116 0.93510 0.93511 0.75368 0.73438 0.79757 0.79757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 2 C 0.01 0.42 5.46 84.66 0.46 0.89 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -30.51 9.11 25.60 0.23 -30.27 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.16 6.92 5.61 86.38 0.48 7.40 16 11 N -0.72 -25.46 5.56 -478.54 -2.66 -28.12 16 12 C 0.70 24.86 8.53 179.06 1.53 26.39 16 13 O -0.62 -27.28 16.32 -4.02 -0.07 -27.34 16 14 N -0.69 -17.73 4.94 -316.73 -1.56 -19.30 16 15 C 0.06 1.41 5.31 38.12 0.20 1.61 16 16 C 0.16 3.29 7.31 22.47 0.16 3.46 16 17 F -0.12 -2.98 17.07 44.97 0.77 -2.21 16 18 C -0.18 -2.74 10.00 22.35 0.22 -2.52 16 19 C 0.17 2.46 7.30 22.37 0.16 2.62 16 20 F -0.11 -1.54 17.26 44.97 0.78 -0.77 16 21 C -0.18 -2.74 10.00 22.35 0.22 -2.52 16 22 C 0.16 3.34 7.31 22.47 0.16 3.50 16 23 F -0.12 -2.99 17.08 44.97 0.77 -2.23 16 24 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.41 12.01 8.49 -92.71 -0.79 11.23 16 30 H 0.43 8.00 8.84 -92.71 -0.82 7.18 16 31 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -69.75 305.46 3.93 -65.82 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.40 Total: 10.48 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 4.00 Total: 11.92 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -3.94 Total: -101.27 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.07 Total: -27.34 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 2.31 Total: -5.20 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -69.75 3.93 -65.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273250245.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.964 kcal (2) G-P(sol) polarization free energy of solvation -69.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds