Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81393 * 103.00095 * 2 1 4 4 C 1.53003 * 109.47402 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47384 * 179.97438 * 4 3 2 6 6 H 1.09000 * 110.53424 * 307.83066 * 5 4 3 7 7 N 1.47306 * 110.73043 * 70.75025 * 5 4 3 8 8 C 1.34529 * 106.61711 * 118.37152 * 7 5 4 9 9 S 1.71200 * 123.76897 * 180.21220 * 8 7 5 10 10 N 1.33790 * 112.45842 * 0.37945 * 8 7 5 11 11 C 1.46499 * 124.17856 * 179.86545 * 10 8 7 12 12 C 1.52992 * 109.47267 * 269.70203 * 11 10 8 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47081 * 119.99727 * 17 15 13 20 20 H 1.48501 * 109.47213 * 240.00099 * 17 15 13 21 21 C 1.34768 * 111.64043 * 359.59947 * 10 8 7 22 22 O 1.21244 * 127.15243 * 180.19204 * 21 10 8 23 23 H 1.08999 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47381 * 300.00435 * 1 2 3 25 25 H 1.09005 * 109.46629 * 60.00673 * 1 2 3 26 26 H 1.09002 * 109.47685 * 59.99303 * 3 2 1 27 27 H 1.09008 * 109.47232 * 299.99744 * 3 2 1 28 28 H 1.09001 * 109.46674 * 60.00042 * 4 3 2 29 29 H 1.08995 * 109.47113 * 299.99934 * 4 3 2 30 30 H 0.97001 * 126.69214 * 298.62178 * 7 5 4 31 31 H 1.09004 * 109.47024 * 149.69920 * 11 10 8 32 32 H 1.09005 * 109.47136 * 29.70304 * 11 10 8 33 33 H 1.09004 * 109.47330 * 59.99904 * 12 11 10 34 34 H 1.08997 * 109.47279 * 300.00390 * 12 11 10 35 35 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4307 0.0000 6 1 3.5630 3.9436 -0.8067 7 7 3.7607 4.0416 1.3002 8 6 4.9174 4.5025 1.8094 9 16 5.0427 5.2944 3.3221 10 7 5.9584 4.2761 1.0000 11 6 7.3361 4.6734 1.3004 12 6 7.5924 6.0789 0.7530 13 6 9.0095 6.4878 1.0625 14 1 9.6619 5.8129 1.5967 15 6 9.4728 7.7241 0.6648 16 7 8.6797 8.5442 0.0104 17 14 11.2295 8.2307 1.0478 18 1 11.9118 7.1348 1.7820 19 1 11.9535 8.5037 -0.2197 20 1 11.2196 9.4563 1.8862 21 6 5.5838 3.6322 -0.1231 22 8 6.2963 3.2868 -1.0413 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8031 2.2372 0.8899 27 1 1.8032 2.2371 -0.8901 28 1 4.1616 1.4702 -0.8891 29 1 4.1609 1.4704 0.8908 30 1 2.8837 4.0972 1.7109 31 1 8.0267 3.9704 0.8345 32 1 7.4880 4.6705 2.3798 33 1 6.9018 6.7818 1.2189 34 1 7.4405 6.0818 -0.3263 35 1 9.0056 9.4140 -0.2690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273343300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -29.189454 kcal Electronic energy + Delta-G solvation = -18269.565015 eV Core-core repulsion = 15326.704078 eV Total energy + Delta-G solvation = -2942.860936 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.67373 -39.25527 -37.49985 -35.35931 -34.11775 -31.96125 -29.96632 -29.39041 -27.32085 -25.66139 -24.07829 -22.78239 -21.93596 -20.15291 -18.69403 -18.23418 -17.85503 -17.21074 -16.97471 -16.76439 -16.44210 -16.03974 -15.52059 -14.99869 -14.89999 -14.65208 -14.47260 -14.24202 -14.07625 -13.64529 -13.20380 -13.06295 -12.91070 -12.67331 -12.51455 -12.33707 -12.15329 -11.94675 -11.63874 -11.35006 -10.96974 -10.72881 -10.60910 -9.28068 -8.97214 -8.70444 -8.24412 -6.35752 -0.56535 0.40925 0.63816 1.03539 1.30283 1.41451 1.42846 1.55705 1.64294 1.66737 2.37955 2.41504 3.10983 3.31327 3.52681 3.73732 3.85457 4.01795 4.23984 4.31195 4.36957 4.37572 4.39918 4.44525 4.65677 4.68582 4.87226 4.92803 5.25927 5.36188 5.58518 5.72496 5.87369 6.04622 6.15621 6.77823 7.33441 8.88484 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.031807 B = 0.003433 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.094652 B = 8154.062801 C = 8661.853414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.314 6.314 3 C -0.076 4.076 4 C -0.092 4.092 5 C 0.098 3.902 6 H 0.184 0.816 7 N -0.629 5.629 8 C 0.567 3.433 9 S -0.644 6.644 10 N -0.535 5.535 11 C 0.124 3.876 12 C 0.029 3.971 13 C -0.539 4.539 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.969 3.031 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.279 1.279 21 C 0.509 3.491 22 O -0.471 6.471 23 H 0.107 0.893 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.466 0.534 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.001 0.999 34 H -0.010 1.010 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.075 -16.826 -2.799 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.089 6.089 3 C -0.224 4.224 4 C -0.131 4.131 5 C -0.014 4.014 6 H 0.200 0.800 7 N -0.268 5.268 8 C 0.210 3.790 9 S -0.513 6.513 10 N -0.257 5.257 11 C 0.004 3.996 12 C -0.009 4.009 13 C -0.578 4.578 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.182 1.182 19 H -0.203 1.203 20 H -0.205 1.205 21 C 0.294 3.706 22 O -0.340 6.340 23 H 0.125 0.875 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.317 0.683 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.019 0.981 34 H 0.008 0.992 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.926 -17.345 -2.619 25.081 hybrid contribution -0.215 1.386 -0.413 1.462 sum -18.141 -15.959 -3.032 24.351 Atomic orbital electron populations 1.23438 0.90751 1.07451 1.06139 1.87342 1.11128 1.12144 1.98254 1.23340 0.97198 0.94367 1.07491 1.21445 0.95986 0.89600 1.06098 1.22680 0.91199 0.98762 0.88770 0.79952 1.45653 1.08266 1.53729 1.19126 1.22223 0.83156 0.82500 0.91079 1.93738 1.94045 1.55400 1.08079 1.46599 1.10780 1.49763 1.18525 1.22140 0.75640 0.98359 1.03457 1.19107 0.96871 0.90669 0.94213 1.21434 0.97500 1.01779 1.37061 0.91267 1.25960 1.02570 0.96446 0.94577 1.70105 1.38051 1.09296 1.39607 0.85329 0.78768 0.78476 0.78078 1.18184 1.20256 1.20511 1.21803 0.91828 0.76015 0.80974 1.90834 1.61388 1.48298 1.33469 0.87486 0.89357 0.89122 0.88131 0.86845 0.87462 0.90072 0.68306 0.88695 0.88037 0.98104 0.99195 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.76 113.37 1.22 0.54 16 2 S -0.31 -3.90 22.38 -56.49 -1.26 -5.17 16 3 C -0.08 -0.54 5.88 71.98 0.42 -0.12 16 4 C -0.09 -1.05 4.97 30.59 0.15 -0.90 16 5 C 0.10 1.47 3.64 44.37 0.16 1.63 16 6 H 0.18 1.52 8.14 -2.39 -0.02 1.50 16 7 N -0.63 -10.92 6.07 -331.15 -2.01 -12.93 16 8 C 0.57 17.32 7.80 179.44 1.40 18.72 16 9 S -0.64 -26.04 29.82 -56.49 -1.68 -27.72 16 10 N -0.53 -18.03 2.60 -643.19 -1.67 -19.71 16 11 C 0.12 5.18 5.47 86.38 0.47 5.65 16 12 C 0.03 1.57 5.30 29.85 0.16 1.73 16 13 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 14 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 15 C 0.00 0.16 5.46 84.66 0.46 0.63 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 17 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C 0.51 14.32 7.65 87.94 0.67 14.99 16 22 O -0.47 -16.12 17.76 -2.92 -0.05 -16.17 16 23 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.10 0.44 7.69 -2.39 -0.02 0.42 16 27 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.47 5.00 8.62 -92.71 -0.80 4.21 16 31 H 0.09 3.79 8.00 -2.38 -0.02 3.78 16 32 H 0.10 4.34 7.26 -2.38 -0.02 4.32 16 33 H 0.00 0.03 8.14 -2.38 -0.02 0.02 16 34 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -79.21 329.71 1.28 -77.93 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.30 Total: 1.58 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 5.35 Total: 12.31 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.40 Total: -89.61 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.05 Total: -16.17 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -29.94 SS G_CDS: -2.95 Total: -32.89 kcal Total: -79.21 1.28 -77.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273343300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.744 kcal (2) G-P(sol) polarization free energy of solvation -79.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds