Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81407 * 103.00058 * 2 1 4 4 C 1.52999 * 109.47077 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.09007 * 110.65446 * 52.09181 * 5 4 3 7 7 N 1.47304 * 110.60605 * 289.17826 * 5 4 3 8 8 C 1.34533 * 106.61833 * 241.25309 * 7 5 4 9 9 S 1.71198 * 123.77010 * 180.20732 * 8 7 5 10 10 N 1.33790 * 112.45711 * 0.37785 * 8 7 5 11 11 C 1.46496 * 124.17747 * 179.86840 * 10 8 7 12 12 C 1.53006 * 109.46995 * 269.69615 * 11 10 8 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.34771 * 111.64401 * 359.59926 * 10 8 7 22 22 O 1.21248 * 127.15807 * 180.19729 * 21 10 8 23 23 H 1.08993 * 109.47442 * 60.00112 * 1 2 3 24 24 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47128 * 299.99502 * 1 2 3 26 26 H 1.08996 * 109.46809 * 59.99992 * 3 2 1 27 27 H 1.08999 * 109.46796 * 300.00138 * 3 2 1 28 28 H 1.08999 * 109.46977 * 60.00516 * 4 3 2 29 29 H 1.08991 * 109.47303 * 300.00344 * 4 3 2 30 30 H 0.96996 * 126.69303 * 61.50200 * 7 5 4 31 31 H 1.09001 * 109.47001 * 149.69913 * 11 10 8 32 32 H 1.09001 * 109.47464 * 29.69354 * 11 10 8 33 33 H 1.08998 * 109.46509 * 60.00302 * 12 11 10 34 34 H 1.08993 * 109.46955 * 299.99862 * 12 11 10 35 35 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0864 3.4308 -0.0013 6 1 3.5626 3.9466 0.8035 7 7 3.7612 4.0373 -1.3037 8 6 4.9167 4.5049 -1.8096 9 16 5.0405 5.3041 -3.3185 10 7 5.9588 4.2723 -1.0035 11 6 7.3365 4.6697 -1.3039 12 6 8.0412 3.5385 -2.0554 13 6 9.4582 3.9475 -2.3650 14 1 9.8201 4.9172 -2.0563 15 6 10.2930 3.0835 -3.0415 16 7 9.8525 1.9025 -3.4169 17 14 12.0496 3.5902 -3.4246 18 1 12.7336 2.4923 -4.1541 19 1 12.7721 3.8685 -2.1575 20 1 12.0395 4.8128 -4.2675 21 6 5.5837 3.6325 0.1218 22 8 6.2959 3.2890 1.0410 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 4.1608 1.4705 -0.8909 29 1 4.1616 1.4703 0.8890 30 1 2.8843 4.0924 -1.7145 31 1 7.8669 4.8737 -0.3737 32 1 7.3291 5.5673 -1.9223 33 1 7.5108 3.3346 -2.9855 34 1 8.0486 2.6410 -1.4370 35 1 8.9404 1.6392 -3.2176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273343303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = -10.189990 kcal Electronic energy + Delta-G solvation = -18415.259535 eV Core-core repulsion = 15473.222478 eV Total energy + Delta-G solvation = -2942.037058 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.49857 -38.04764 -36.32346 -33.94099 -32.88571 -30.00443 -29.49138 -28.47818 -25.09228 -24.62159 -22.47889 -21.92047 -20.66795 -18.90777 -17.28853 -17.03268 -16.61414 -16.45096 -15.96875 -15.67709 -15.02670 -14.78466 -14.19934 -13.98001 -13.71633 -13.64537 -13.46414 -13.24165 -12.78478 -12.51211 -12.29625 -11.91035 -11.68079 -11.27791 -10.88802 -10.61412 -10.53340 -10.43866 -10.19519 -10.07391 -9.46390 -8.67708 -8.35266 -8.13188 -7.88662 -7.48945 -6.39119 -4.09371 0.59954 1.14664 1.68083 2.09501 2.21366 2.59953 2.64502 3.41243 3.46465 3.49306 3.67146 4.12257 4.17054 4.36112 4.50817 4.55480 4.66656 4.69656 4.86465 4.91300 5.24087 5.24301 5.39854 5.49780 5.68369 5.72193 6.04131 6.39152 6.59488 6.73264 7.18846 7.30699 7.38087 8.07323 8.39975 8.81851 9.62794 11.01808 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.003953 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.489659 B = 7081.697295 C = 7614.003602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.248 6.248 3 C -0.088 4.088 4 C -0.103 4.103 5 C 0.080 3.920 6 H 0.139 0.861 7 N -0.670 5.670 8 C 0.543 3.457 9 S -0.549 6.549 10 N -0.525 5.525 11 C 0.114 3.886 12 C 0.003 3.997 13 C -0.600 4.600 14 H 0.054 0.946 15 C 0.019 3.981 16 N -0.907 5.907 17 Si 1.072 2.928 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.286 1.286 21 C 0.515 3.485 22 O -0.442 6.442 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.448 0.552 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.024 0.976 34 H 0.008 0.992 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.617 0.089 10.137 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.022 6.022 3 C -0.236 4.236 4 C -0.143 4.143 5 C -0.033 4.033 6 H 0.156 0.844 7 N -0.311 5.311 8 C 0.192 3.808 9 S -0.416 6.416 10 N -0.247 5.247 11 C -0.004 4.004 12 C -0.035 4.035 13 C -0.639 4.639 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.542 5.542 17 Si 0.899 3.101 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.212 1.212 21 C 0.297 3.703 22 O -0.309 6.309 23 H 0.097 0.903 24 H 0.122 0.878 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.294 0.706 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.043 0.957 34 H 0.026 0.974 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.986 -1.055 9.142 20.204 hybrid contribution -2.882 1.136 1.340 3.375 sum -20.869 0.081 10.482 23.353 Atomic orbital electron populations 1.23410 0.94037 1.06804 1.04980 1.87225 1.07344 1.09602 1.98043 1.23356 0.98926 0.96008 1.05331 1.21519 0.94303 0.91864 1.06639 1.22461 0.95142 0.97176 0.88542 0.84378 1.45668 1.09206 1.56652 1.19537 1.22803 0.81922 0.83656 0.92438 1.93564 1.93242 1.50388 1.04439 1.46733 1.11241 1.49513 1.17231 1.22547 0.73000 1.02532 1.02350 1.19505 0.96464 0.92336 0.95153 1.21753 0.96059 1.04443 1.41640 0.92807 1.25864 1.05394 0.93723 0.93528 1.70781 1.19236 1.20083 1.44105 0.83507 0.74376 0.75701 0.76486 1.20720 1.21379 1.21186 1.20981 0.89598 0.77337 0.82363 1.90848 1.59983 1.46629 1.33466 0.90333 0.87848 0.90407 0.89252 0.89799 0.88929 0.87619 0.70561 0.89302 0.87454 0.95749 0.97373 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.76 101.05 1.09 0.44 16 2 S -0.25 -2.11 22.38 -107.50 -2.41 -4.52 16 3 C -0.09 -0.55 5.88 37.16 0.22 -0.33 16 4 C -0.10 -0.89 4.96 -26.73 -0.13 -1.03 16 5 C 0.08 0.73 3.64 -68.21 -0.25 0.49 16 6 H 0.14 0.79 8.14 -51.92 -0.42 0.36 16 7 N -0.67 -6.72 6.06 -56.02 -0.34 -7.06 16 8 C 0.54 8.45 7.80 -88.02 -0.69 7.77 16 9 S -0.55 -10.79 29.82 -107.50 -3.21 -14.00 16 10 N -0.52 -8.91 2.60 -117.22 -0.31 -9.21 16 11 C 0.11 2.35 5.47 -4.04 -0.02 2.32 16 12 C 0.00 0.09 4.61 -27.88 -0.13 -0.04 16 13 C -0.60 -17.08 9.11 -34.44 -0.31 -17.39 16 14 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 16 N -0.91 -28.17 13.65 55.43 0.76 -27.41 16 17 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.51 7.59 7.65 -10.55 -0.08 7.51 16 22 O -0.44 -7.74 17.76 5.59 0.10 -7.64 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.44 7.68 -51.92 -0.40 0.04 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.45 3.20 8.61 -40.82 -0.35 2.85 16 31 H 0.09 1.78 8.00 -51.93 -0.42 1.37 16 32 H 0.11 2.25 7.26 -51.93 -0.38 1.88 16 33 H 0.02 0.68 8.01 -51.93 -0.42 0.26 16 34 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 35 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -35.32 328.37 -10.77 -46.09 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.83 Total: -1.86 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -0.40 Total: 0.20 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.11 Total: -43.68 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.10 Total: -7.64 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Atomic # 16 Polarization: -12.90 SS G_CDS: -5.61 Total: -18.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.32 -10.77 -46.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273343303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.898 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds