Wall clock time and date at job start Tue Mar 31 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81407 * 103.00058 * 2 1 4 4 C 1.52999 * 109.47077 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46846 * 179.97438 * 4 3 2 6 6 H 1.09007 * 110.65446 * 52.09181 * 5 4 3 7 7 N 1.47304 * 110.60605 * 289.17826 * 5 4 3 8 8 C 1.34533 * 106.61833 * 241.25309 * 7 5 4 9 9 S 1.71198 * 123.77010 * 180.20732 * 8 7 5 10 10 N 1.33790 * 112.45711 * 0.37785 * 8 7 5 11 11 C 1.46496 * 124.17747 * 179.86840 * 10 8 7 12 12 C 1.53006 * 109.46995 * 269.69615 * 11 10 8 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.34771 * 111.64401 * 359.59926 * 10 8 7 22 22 O 1.21248 * 127.15807 * 180.19729 * 21 10 8 23 23 H 1.08993 * 109.47442 * 60.00112 * 1 2 3 24 24 H 1.09004 * 109.46812 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47128 * 299.99502 * 1 2 3 26 26 H 1.08996 * 109.46809 * 59.99992 * 3 2 1 27 27 H 1.08999 * 109.46796 * 300.00138 * 3 2 1 28 28 H 1.08999 * 109.46977 * 60.00516 * 4 3 2 29 29 H 1.08991 * 109.47303 * 300.00344 * 4 3 2 30 30 H 0.96996 * 126.69303 * 61.50200 * 7 5 4 31 31 H 1.09001 * 109.47001 * 149.69913 * 11 10 8 32 32 H 1.09001 * 109.47464 * 29.69354 * 11 10 8 33 33 H 1.08998 * 109.46509 * 60.00302 * 12 11 10 34 34 H 1.08993 * 109.46955 * 299.99862 * 12 11 10 35 35 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0864 3.4308 -0.0013 6 1 3.5626 3.9466 0.8035 7 7 3.7612 4.0373 -1.3037 8 6 4.9167 4.5049 -1.8096 9 16 5.0405 5.3041 -3.3185 10 7 5.9588 4.2723 -1.0035 11 6 7.3365 4.6697 -1.3039 12 6 8.0412 3.5385 -2.0554 13 6 9.4582 3.9475 -2.3650 14 1 9.8201 4.9172 -2.0563 15 6 10.2930 3.0835 -3.0415 16 7 9.8525 1.9025 -3.4169 17 14 12.0496 3.5902 -3.4246 18 1 12.7336 2.4923 -4.1541 19 1 12.7721 3.8685 -2.1575 20 1 12.0395 4.8128 -4.2675 21 6 5.5837 3.6325 0.1218 22 8 6.2959 3.2890 1.0410 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 4.1608 1.4705 -0.8909 29 1 4.1616 1.4703 0.8890 30 1 2.8843 4.0924 -1.7145 31 1 7.8669 4.8737 -0.3737 32 1 7.3291 5.5673 -1.9223 33 1 7.5108 3.3346 -2.9855 34 1 8.0486 2.6410 -1.4370 35 1 8.9404 1.6392 -3.2176 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273343303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:25 Heat of formation + Delta-G solvation = -33.635224 kcal Electronic energy + Delta-G solvation = -18416.276197 eV Core-core repulsion = 15473.222478 eV Total energy + Delta-G solvation = -2943.053719 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.75855 -39.33840 -37.64268 -35.68682 -34.19003 -31.80695 -29.99871 -29.41220 -26.97293 -25.72413 -24.26854 -22.96289 -22.08784 -20.15460 -19.14255 -18.33403 -17.87125 -17.28803 -17.07811 -17.02713 -16.15918 -15.66640 -15.59765 -15.18844 -15.00646 -14.79276 -14.52238 -14.45008 -14.11697 -13.85355 -13.33478 -13.07208 -12.77847 -12.73752 -12.42978 -12.36347 -12.22531 -11.92089 -11.68351 -11.05251 -10.96226 -10.72370 -10.58816 -9.35930 -9.05401 -8.75630 -8.74406 -6.45565 -0.64929 0.32163 0.60060 0.95260 1.21851 1.53761 1.59330 1.62548 1.62885 1.81412 2.31009 2.56535 3.12794 3.23582 3.44779 3.68568 3.77028 3.95863 4.11824 4.19749 4.21454 4.34265 4.34960 4.38155 4.50797 4.58390 4.81458 4.89632 5.05329 5.10352 5.41991 5.80416 5.82416 6.03650 6.10215 6.46612 7.36756 8.66415 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.003953 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.489659 B = 7081.697295 C = 7614.003602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.327 6.327 3 C -0.070 4.070 4 C -0.099 4.099 5 C 0.102 3.898 6 H 0.200 0.800 7 N -0.627 5.627 8 C 0.566 3.434 9 S -0.644 6.644 10 N -0.536 5.536 11 C 0.131 3.869 12 C 0.014 3.986 13 C -0.616 4.616 14 H 0.062 0.938 15 C -0.036 4.036 16 N -0.933 5.933 17 Si 1.120 2.880 18 H -0.284 1.284 19 H -0.264 1.264 20 H -0.267 1.267 21 C 0.507 3.493 22 O -0.471 6.471 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.467 0.533 31 H 0.096 0.904 32 H 0.103 0.897 33 H -0.005 1.005 34 H -0.016 1.016 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.480 0.918 11.979 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.101 6.101 3 C -0.218 4.218 4 C -0.139 4.139 5 C -0.010 4.010 6 H 0.217 0.783 7 N -0.266 5.266 8 C 0.209 3.791 9 S -0.512 6.512 10 N -0.259 5.259 11 C 0.011 3.989 12 C -0.024 4.024 13 C -0.654 4.654 14 H 0.081 0.919 15 C -0.234 4.234 16 N -0.570 5.570 17 Si 0.940 3.060 18 H -0.210 1.210 19 H -0.189 1.189 20 H -0.193 1.193 21 C 0.292 3.708 22 O -0.340 6.340 23 H 0.107 0.893 24 H 0.124 0.876 25 H 0.113 0.887 26 H 0.140 0.860 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.318 0.682 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.014 0.986 34 H 0.002 0.998 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.953 -0.240 11.026 22.798 hybrid contribution -2.410 0.771 0.908 2.688 sum -22.363 0.531 11.934 25.354 Atomic orbital electron populations 1.23427 0.90270 1.07469 1.06270 1.87556 1.11616 1.12705 1.98273 1.23317 0.96620 0.94098 1.07783 1.21469 0.96414 0.90483 1.05496 1.22720 0.91054 0.98292 0.88908 0.78344 1.45677 1.08371 1.53281 1.19276 1.22236 0.83076 0.83034 0.90715 1.93775 1.94078 1.54977 1.08384 1.46604 1.10333 1.50363 1.18580 1.21970 0.74979 1.00100 1.01806 1.19263 0.96001 0.93146 0.93959 1.22232 0.97376 1.04735 1.41027 0.91939 1.27517 1.09693 0.93165 0.93001 1.70925 1.18471 1.21577 1.46008 0.82912 0.69598 0.75888 0.77564 1.20963 1.18891 1.19253 1.21886 0.91943 0.75950 0.80988 1.90840 1.61433 1.47427 1.34265 0.89326 0.87603 0.88732 0.85960 0.88101 0.91581 0.87625 0.68204 0.88585 0.87898 0.98634 0.99784 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.76 113.37 1.22 0.42 16 2 S -0.33 -4.95 22.38 -56.49 -1.26 -6.22 16 3 C -0.07 -0.60 5.88 71.98 0.42 -0.17 16 4 C -0.10 -1.42 4.96 30.59 0.15 -1.27 16 5 C 0.10 1.46 3.64 44.37 0.16 1.62 16 6 H 0.20 0.86 8.14 -2.38 -0.02 0.84 16 7 N -0.63 -10.53 6.06 -331.13 -2.01 -12.54 16 8 C 0.57 17.08 7.80 179.44 1.40 18.48 16 9 S -0.64 -25.90 29.82 -56.49 -1.68 -27.58 16 10 N -0.54 -17.94 2.60 -643.16 -1.67 -19.62 16 11 C 0.13 5.52 5.47 86.38 0.47 5.99 16 12 C 0.01 0.77 4.61 29.85 0.14 0.90 16 13 C -0.62 -35.72 9.11 25.60 0.23 -35.49 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 15 C -0.04 -2.15 5.46 84.65 0.46 -1.69 16 16 N -0.93 -59.75 13.65 21.45 0.29 -59.46 16 17 Si 1.12 51.26 29.90 68.60 2.05 53.31 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 C 0.51 14.07 7.65 87.94 0.67 14.74 16 22 O -0.47 -16.00 17.76 -2.93 -0.05 -16.05 16 23 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.10 0.55 7.68 -2.39 -0.02 0.53 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.47 4.73 8.61 -92.71 -0.80 3.93 16 31 H 0.10 3.87 8.00 -2.39 -0.02 3.85 16 32 H 0.10 4.43 7.26 -2.39 -0.02 4.41 16 33 H 0.00 -0.27 8.01 -2.39 -0.02 -0.29 16 34 H -0.02 -0.93 8.01 -2.39 -0.02 -0.95 16 35 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 Total: -1.00 -82.91 328.37 1.40 -81.52 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 0.40 Total: 3.10 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 5.33 Total: 3.54 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.39 Total: -91.62 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.05 Total: -16.05 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.05 Total: 53.31 kcal Atomic # 16 Polarization: -30.85 SS G_CDS: -2.95 Total: -33.80 kcal Total: -82.91 1.40 -81.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273343303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.881 kcal (2) G-P(sol) polarization free energy of solvation -82.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds