Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42100 * 109.46600 * 296.38822 * 11 10 9 13 13 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 14 14 C 1.50695 * 109.47452 * 180.02562 * 13 11 10 15 15 C 1.38260 * 119.99811 * 269.72979 * 14 13 11 16 16 C 1.38217 * 119.99870 * 179.78828 * 15 14 13 17 17 C 1.38251 * 119.99799 * 0.43506 * 16 15 14 18 18 C 1.38220 * 120.00447 * 359.81646 * 17 16 15 19 19 C 1.50696 * 120.00443 * 180.02562 * 18 17 16 20 20 F 1.39905 * 109.47075 * 29.97432 * 19 18 17 21 21 F 1.39895 * 109.47395 * 149.97677 * 19 18 17 22 22 C 1.38214 * 120.00180 * 89.99600 * 14 13 11 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 1.09007 * 109.46846 * 299.99983 * 13 11 10 29 29 H 1.09007 * 109.47453 * 59.99610 * 13 11 10 30 30 H 1.07995 * 119.99976 * 359.97438 * 15 14 13 31 31 H 1.08002 * 119.99941 * 180.27249 * 16 15 14 32 32 H 1.08007 * 120.00034 * 179.83685 * 17 16 15 33 33 H 1.09001 * 109.46589 * 269.97723 * 19 18 17 34 34 H 1.07999 * 119.99682 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3384 -5.2331 0.0021 12 8 0.5864 -5.3453 1.2026 13 6 2.6650 -6.4702 0.0025 14 6 2.0635 -7.8519 0.0024 15 6 1.7925 -8.4879 1.1998 16 6 1.2367 -9.7534 1.1997 17 6 0.9602 -10.3869 0.0024 18 6 1.2360 -9.7532 -1.1946 19 6 0.9340 -10.4435 -2.4998 20 9 -0.1589 -11.3006 -2.3320 21 9 0.6310 -9.4866 -3.4742 22 6 1.7879 -8.4856 -1.1946 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 3.2811 -6.3425 -0.8876 29 1 3.2813 -6.3419 0.8924 30 1 2.0122 -7.9946 2.1350 31 1 1.0209 -10.2484 2.1350 32 1 0.5283 -11.3769 0.0023 33 1 1.8033 -11.0205 -2.8151 34 1 2.0032 -7.9903 -2.1298 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281283496.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -129.416118 kcal Electronic energy + Delta-G solvation = -19514.190375 eV Core-core repulsion = 15980.850146 eV Total energy + Delta-G solvation = -3533.340228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.21473 -47.23162 -39.52644 -35.18685 -33.69717 -33.30453 -31.87580 -30.90529 -27.40796 -26.36119 -25.28406 -22.43812 -21.63466 -20.84915 -17.71620 -17.67458 -17.35664 -17.04014 -16.49262 -16.10506 -15.38910 -14.87696 -14.79104 -14.48801 -14.24065 -13.97624 -13.85272 -13.57574 -13.25947 -13.12103 -12.81449 -12.61035 -12.33960 -12.11882 -11.70268 -11.40837 -11.31782 -11.04492 -10.98605 -10.74762 -10.20691 -10.16101 -9.63180 -9.31625 -9.19309 -8.64562 -8.43477 -7.69499 -6.06010 -4.10464 0.89284 1.05917 2.01790 3.11980 3.27511 3.35087 3.38575 3.40828 3.54172 3.92191 4.16259 4.33136 4.41773 4.59697 4.66042 4.78964 4.89709 5.10781 5.18390 5.29027 5.36719 5.52546 5.71176 5.85010 5.91877 6.10560 6.11450 6.19205 6.35724 6.67576 6.77800 7.47802 7.58800 7.88985 8.29912 8.94490 9.53863 11.04601 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.030688 B = 0.003096 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.176819 B = 9040.545983 C = 9463.543469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.416 4.416 11 S 1.224 4.776 12 O -0.843 6.843 13 C -0.422 4.422 14 C -0.053 4.053 15 C -0.094 4.094 16 C -0.116 4.116 17 C -0.095 4.095 18 C -0.169 4.169 19 C 0.315 3.685 20 F -0.201 7.201 21 F -0.197 7.197 22 C -0.086 4.086 23 H 0.262 0.738 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -22.641 -5.672 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.556 4.556 11 S 1.425 4.575 12 O -0.838 6.838 13 C -0.555 4.555 14 C -0.054 4.054 15 C -0.113 4.113 16 C -0.134 4.134 17 C -0.114 4.114 18 C -0.170 4.170 19 C 0.262 3.738 20 F -0.182 7.182 21 F -0.178 7.178 22 C -0.105 4.105 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.823 -22.699 -5.666 23.706 hybrid contribution 1.742 1.266 1.881 2.859 sum 5.565 -21.433 -3.786 22.465 Atomic orbital electron populations 1.69967 1.06054 1.26793 1.50253 1.25052 0.94915 0.99370 0.95154 0.86486 0.79991 0.83536 0.77695 1.19748 1.20788 1.20983 1.21184 0.93040 0.90391 1.51261 0.92420 1.18801 0.92985 0.90156 0.98174 1.27624 1.09606 1.12361 1.06034 1.70674 0.87227 0.86887 1.12759 1.93097 1.56062 1.83931 1.50744 1.26900 1.15103 1.05413 1.08041 1.19163 0.98792 0.94362 0.93079 1.21281 0.97247 0.94720 0.98097 1.21105 0.99080 0.95132 0.98033 1.20883 0.98781 1.00245 0.91446 1.20357 1.05288 0.97005 0.94358 1.20273 0.86878 0.81592 0.85068 1.92994 1.58417 1.70922 1.95881 1.93013 1.94468 1.65790 1.64510 1.20838 0.97828 0.93308 0.98519 0.92800 0.95275 0.95882 0.87562 0.90891 0.85659 0.88824 0.85699 0.85343 0.85220 0.86201 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.95 4.98 -27.88 -0.14 0.82 16 10 C -0.42 -7.98 5.86 37.16 0.22 -7.76 16 11 S 1.22 19.42 13.14 -107.50 -1.41 18.01 16 12 O -0.84 -18.68 18.14 -35.23 -0.64 -19.32 16 13 C -0.42 -5.06 6.05 36.00 0.22 -4.84 16 14 C -0.05 -0.64 5.14 -104.62 -0.54 -1.18 16 15 C -0.09 -1.18 9.70 -39.58 -0.38 -1.56 16 16 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 17 C -0.09 -0.92 9.40 -39.58 -0.37 -1.30 16 18 C -0.17 -1.66 5.74 -104.62 -0.60 -2.26 16 19 C 0.32 2.57 5.65 36.00 0.20 2.78 16 20 F -0.20 -1.95 16.48 2.25 0.04 -1.92 16 21 F -0.20 -1.94 16.48 2.25 0.04 -1.90 16 22 C -0.09 -0.89 9.05 -39.58 -0.36 -1.25 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 27 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 28 H 0.13 1.10 8.09 -51.92 -0.42 0.68 16 29 H 0.09 1.17 8.08 -51.92 -0.42 0.75 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.01 7.60 -52.48 -0.40 0.61 16 33 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.14 1.14 7.60 -52.49 -0.40 0.74 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -36.09 318.83 -8.16 -44.24 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.14 Total: -2.81 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -2.56 Total: -31.53 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.64 Total: -19.32 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.07 Total: -3.82 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 19.42 SS G_CDS: -1.41 Total: 18.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.09 -8.16 -44.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281283496.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.173 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds