Wall clock time and date at job start Tue Mar 31 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47391 * 240.00125 * 3 2 1 5 5 H 1.48503 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47298 * 120.00053 * 3 2 1 7 7 C 1.37885 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47394 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47394 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99716 * 0.02562 * 11 10 9 13 13 O 1.34261 * 120.00094 * 180.02562 * 11 10 9 14 14 C 1.35920 * 117.00207 * 185.77384 * 13 11 10 15 15 C 1.38758 * 120.05567 * 249.01743 * 14 13 11 16 16 C 1.38116 * 119.94495 * 179.97438 * 15 14 13 17 17 C 1.38292 * 120.05559 * 359.74874 * 16 15 14 18 18 C 1.38255 * 120.10906 * 0.50679 * 17 16 15 19 19 C 1.50700 * 119.97097 * 179.76700 * 18 17 16 20 20 F 1.39901 * 109.46890 * 269.72590 * 19 18 17 21 21 F 1.39903 * 109.47187 * 29.72413 * 19 18 17 22 22 F 1.39901 * 109.46869 * 149.72380 * 19 18 17 23 23 C 1.38157 * 120.05477 * 359.49034 * 18 17 16 24 24 H 0.97002 * 119.99631 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47035 * 60.00020 * 9 7 2 26 26 H 1.08998 * 109.47293 * 300.00284 * 9 7 2 27 27 H 1.09005 * 109.46748 * 59.99727 * 10 9 7 28 28 H 1.09003 * 109.46750 * 300.00440 * 10 9 7 29 29 H 1.08003 * 120.02273 * 359.95678 * 15 14 13 30 30 H 1.07998 * 119.97504 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.94612 * 180.27429 * 17 16 15 32 32 H 1.07996 * 120.02949 * 180.22958 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4916 -4.9673 -0.0001 12 8 0.2834 -4.9672 -0.0010 13 8 2.1629 -6.1300 0.0003 14 6 1.4280 -7.2669 -0.1221 15 6 1.3136 -8.1393 0.9507 16 6 0.5658 -9.2936 0.8240 17 6 -0.0728 -9.5776 -0.3693 18 6 0.0440 -8.7125 -1.4415 19 6 -0.6490 -9.0277 -2.7421 20 9 0.2080 -9.7738 -3.5582 21 9 -1.8090 -9.7665 -2.4854 22 9 -0.9893 -7.8354 -3.3900 23 6 0.7907 -7.5566 -1.3197 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8902 27 1 2.8718 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8895 29 1 1.8091 -7.9160 1.8841 30 1 0.4768 -9.9732 1.6586 31 1 -0.6607 -10.4785 -0.4651 32 1 0.8787 -6.8793 -2.1563 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291017761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:33 Heat of formation + Delta-G solvation = -212.489055 kcal Electronic energy + Delta-G solvation = -22003.968574 eV Core-core repulsion = 17900.812857 eV Total energy + Delta-G solvation = -4103.155717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.32523 -47.83600 -47.78416 -41.21522 -38.97163 -36.69511 -33.68782 -32.26995 -31.42058 -30.48100 -26.40086 -26.25972 -23.83480 -22.54891 -21.74578 -20.18151 -18.82830 -18.65964 -18.54923 -17.41266 -16.64559 -16.58520 -16.47725 -15.76013 -14.95332 -14.70561 -14.54645 -14.49620 -14.33179 -14.20004 -13.93137 -13.92554 -13.45623 -13.06725 -12.94320 -12.79019 -12.34074 -12.07630 -11.87399 -11.36421 -11.00137 -10.94120 -10.71756 -10.19788 -10.14757 -9.74655 -9.53927 -9.27805 -9.02021 -8.43062 -6.06769 -4.12517 0.57702 0.82529 2.40251 2.53972 2.77307 3.29839 3.33824 3.35361 3.38023 3.50377 3.84680 4.23390 4.39521 4.50882 4.63064 4.75092 4.91681 5.03682 5.28797 5.32065 5.60201 5.75523 5.89910 5.91219 5.98508 6.04920 6.25287 6.62564 6.75774 7.58335 7.63128 7.90508 8.09828 8.28115 8.93932 9.52075 11.04096 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.025942 B = 0.003366 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.078590 B = 8315.956602 C = 8902.899607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.100 4.100 11 C 0.453 3.547 12 O -0.482 6.482 13 O -0.302 6.302 14 C 0.097 3.903 15 C -0.090 4.090 16 C -0.105 4.105 17 C -0.078 4.078 18 C -0.169 4.169 19 C 0.510 3.490 20 F -0.176 7.176 21 F -0.176 7.176 22 F -0.172 7.172 23 C -0.080 4.080 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 -21.286 -1.038 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.297 3.703 12 O -0.364 6.364 13 O -0.219 6.219 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.123 4.123 17 C -0.096 4.096 18 C -0.170 4.170 19 C 0.456 3.544 20 F -0.158 7.158 21 F -0.158 7.158 22 F -0.153 7.153 23 C -0.098 4.098 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.414 -21.161 -1.064 21.235 hybrid contribution 0.211 0.834 -0.287 0.907 sum 1.624 -20.327 -1.351 20.436 Atomic orbital electron populations 1.69977 1.06127 1.27012 1.49528 1.25015 0.94856 0.99371 0.94964 0.86583 0.79509 0.82788 0.78678 1.20119 1.21215 1.20119 1.21082 0.93058 0.90498 1.52360 0.92253 1.19054 0.93190 0.89160 0.99062 1.21864 1.00811 0.86558 1.04476 1.25407 0.88312 0.84854 0.71709 1.90696 1.15600 1.86651 1.43488 1.84783 1.39906 1.13312 1.83904 1.18450 0.95387 0.87614 0.92978 1.21415 0.97291 0.94349 0.97803 1.21009 0.96752 0.96977 0.97597 1.20980 0.98021 0.98635 0.91959 1.19757 1.04308 0.98996 0.93949 1.18211 0.76862 0.74478 0.84822 1.93225 1.70249 1.77242 1.75066 1.93188 1.50804 1.77657 1.94109 1.93237 1.92544 1.46301 1.83249 1.21121 0.94523 0.95827 0.98363 0.92695 0.95474 0.95454 0.88456 0.88445 0.83987 0.83920 0.84257 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -1.92 5.75 -27.88 -0.16 -2.08 16 11 C 0.45 8.53 7.73 36.01 0.28 8.81 16 12 O -0.48 -10.63 15.39 -18.75 -0.29 -10.92 16 13 O -0.30 -4.81 10.04 -23.60 -0.24 -5.04 16 14 C 0.10 1.40 5.27 -39.21 -0.21 1.19 16 15 C -0.09 -1.02 9.99 -39.43 -0.39 -1.41 16 16 C -0.11 -0.95 10.04 -39.61 -0.40 -1.35 16 17 C -0.08 -0.76 9.40 -39.56 -0.37 -1.14 16 18 C -0.17 -2.05 5.45 -104.65 -0.57 -2.62 16 19 C 0.51 6.13 3.37 36.01 0.12 6.25 16 20 F -0.18 -2.06 17.30 2.25 0.04 -2.02 16 21 F -0.18 -2.01 16.45 2.25 0.04 -1.98 16 22 F -0.17 -2.35 16.46 2.25 0.04 -2.31 16 23 C -0.08 -1.12 8.68 -39.44 -0.34 -1.46 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.03 0.76 8.10 -51.93 -0.42 0.33 16 27 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 28 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 29 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 30 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.14 1.02 7.59 -52.49 -0.40 0.62 16 32 H 0.14 2.01 7.60 -52.49 -0.40 1.61 16 LS Contribution 304.14 15.07 4.58 4.58 Total: -1.00 -31.47 304.14 -5.56 -37.03 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -2.87 Total: -3.25 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.57 Total: -6.31 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.53 Total: -15.96 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.11 Total: -6.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.47 -5.56 -37.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291017761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.462 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds