Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48494 * 109.47243 * 270.00440 * 3 2 1 5 5 H 1.48501 * 109.46942 * 30.00738 * 3 2 1 6 6 H 1.48504 * 109.47046 * 150.00190 * 3 2 1 7 7 C 1.37877 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00436 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99674 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00240 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.40097 * 119.99742 * 180.02562 * 13 11 10 15 15 C 1.39990 * 119.99769 * 179.97438 * 14 13 11 16 16 C 1.38804 * 120.04473 * 359.97438 * 15 14 13 17 17 C 1.38329 * 119.95257 * 180.02562 * 16 15 14 18 18 F 1.35103 * 119.98144 * 179.97438 * 17 16 15 19 19 C 1.38663 * 120.04138 * 359.72585 * 17 16 15 20 20 F 1.35092 * 119.95727 * 180.27674 * 19 17 16 21 21 C 1.38419 * 120.08702 * 0.55021 * 19 17 16 22 22 C 1.38315 * 120.04907 * 359.44689 * 21 19 17 23 23 F 1.35097 * 120.01868 * 180.29524 * 22 21 19 24 24 H 0.97008 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46961 * 59.99563 * 9 7 2 26 26 H 1.08997 * 109.46912 * 299.99630 * 9 7 2 27 27 H 1.08993 * 109.47173 * 60.00008 * 10 9 7 28 28 H 1.08997 * 109.47246 * 299.99688 * 10 9 7 29 29 H 0.96998 * 119.99839 * 0.02562 * 13 11 10 30 30 H 0.96998 * 120.00420 * 359.97438 * 14 13 11 31 31 H 1.08005 * 120.02241 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.97764 * 179.72854 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 8 6.1349 -1.5864 -0.0036 13 7 6.2024 -3.8039 -0.0018 14 7 7.6033 -3.8038 -0.0024 15 6 8.3033 -5.0162 -0.0014 16 6 7.6102 -6.2188 0.0007 17 6 8.3037 -7.4157 0.0022 18 9 7.6297 -8.5866 0.0047 19 6 9.6903 -7.4145 -0.0042 20 9 10.3659 -8.5843 -0.0084 21 6 10.3832 -6.2162 -0.0005 22 6 9.6935 -5.0173 -0.0021 23 9 10.3704 -3.8481 -0.0045 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1506 -0.8907 28 1 3.6585 -3.1502 0.8892 29 1 5.7173 -4.6439 -0.0011 30 1 8.0884 -2.9638 -0.0035 31 1 6.5301 -6.2201 0.0020 32 1 11.4633 -6.2174 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291625781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -111.028700 kcal Electronic energy + Delta-G solvation = -21484.410689 eV Core-core repulsion = 17417.947374 eV Total energy + Delta-G solvation = -4066.463315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.80135 -49.32996 -48.86035 -40.18067 -39.01839 -36.09244 -33.68005 -32.37571 -31.29761 -30.96708 -28.43771 -26.11216 -24.02104 -22.95155 -21.76893 -20.38268 -18.95970 -18.46839 -18.37963 -17.33046 -17.14960 -16.82865 -16.57038 -15.91374 -15.90186 -15.45445 -15.41690 -15.25978 -14.84701 -14.57055 -14.16342 -13.81724 -13.61904 -13.60466 -12.73343 -12.70256 -12.66275 -12.07170 -11.58459 -11.46605 -11.08207 -10.36941 -10.22202 -9.94997 -9.76822 -9.67877 -9.32633 -9.31390 -8.60384 -7.65995 -6.12194 -4.12411 0.32550 0.50793 1.59129 2.62675 2.83375 3.25332 3.30982 3.38348 3.47139 3.51217 3.78176 3.91768 4.06338 4.42039 4.55364 4.77626 4.98330 5.14739 5.16436 5.22925 5.31397 5.45549 5.79751 5.84580 6.09254 6.34390 6.53393 7.00519 7.20225 7.26139 7.37852 7.66000 8.26219 8.41254 8.89562 9.49825 11.00327 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.003000 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.334957 B = 9329.976540 C =10183.860296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.110 4.110 11 C 0.512 3.488 12 O -0.532 6.532 13 N -0.536 5.536 14 N -0.526 5.526 15 C 0.220 3.780 16 C -0.195 4.195 17 C 0.124 3.876 18 F -0.120 7.120 19 C 0.028 3.972 20 F -0.127 7.127 21 C -0.102 4.102 22 C 0.043 3.957 23 F -0.127 7.127 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.422 0.578 30 H 0.442 0.558 31 H 0.152 0.848 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.879 -15.569 0.035 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.036 4.036 10 C -0.151 4.151 11 C 0.301 3.699 12 O -0.405 6.405 13 N -0.286 5.286 14 N -0.248 5.248 15 C 0.110 3.890 16 C -0.220 4.220 17 C 0.103 3.897 18 F -0.099 7.099 19 C 0.005 3.995 20 F -0.105 7.105 21 C -0.123 4.123 22 C 0.017 3.983 23 F -0.106 7.106 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.264 0.736 30 H 0.287 0.713 31 H 0.170 0.830 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 19.928 -14.632 0.037 24.723 hybrid contribution 0.449 0.531 -0.026 0.696 sum 20.377 -14.101 0.010 24.780 Atomic orbital electron populations 1.69905 1.06301 1.27129 1.50526 1.24961 0.94718 0.99248 0.94183 0.86799 0.80567 0.83401 0.78792 1.20179 1.21338 1.18584 1.21039 0.88932 0.94718 1.51990 0.90745 1.19411 0.96713 0.89487 0.97982 1.21712 0.85053 1.04178 1.04204 1.22129 0.91567 0.81506 0.74675 1.90702 1.70175 1.30901 1.48731 1.45555 0.93182 1.11070 1.78815 1.43379 0.95128 1.06297 1.80039 1.17417 0.89032 0.86097 0.96408 1.20077 1.01109 0.88493 1.12327 1.17201 0.88037 0.81951 1.02506 1.91567 1.79867 1.44918 1.93508 1.16902 0.87833 0.82231 1.12504 1.91532 1.79646 1.44776 1.94579 1.20685 1.01844 0.88734 1.00994 1.16465 0.86757 0.82117 1.12935 1.91533 1.79546 1.44937 1.94553 0.92567 0.95586 0.96026 0.88754 0.88720 0.73619 0.71329 0.83005 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.29 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.53 -14.34 9.66 -34.44 -0.33 -14.68 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.11 -1.86 5.64 -27.88 -0.16 -2.01 16 11 C 0.51 8.13 7.95 -10.98 -0.09 8.04 16 12 O -0.53 -10.57 15.82 5.56 0.09 -10.48 16 13 N -0.54 -6.20 6.22 31.22 0.19 -6.00 16 14 N -0.53 -5.88 6.46 32.48 0.21 -5.67 16 15 C 0.22 2.05 6.73 -83.63 -0.56 1.49 16 16 C -0.20 -1.61 9.46 -39.34 -0.37 -1.99 16 17 C 0.12 1.11 7.30 -39.39 -0.29 0.82 16 18 F -0.12 -1.18 17.18 2.25 0.04 -1.15 16 19 C 0.03 0.25 7.30 -39.36 -0.29 -0.04 16 20 F -0.13 -1.23 17.18 2.25 0.04 -1.19 16 21 C -0.10 -0.77 9.99 -39.49 -0.39 -1.17 16 22 C 0.04 0.38 7.31 -39.26 -0.29 0.09 16 23 F -0.13 -1.25 16.64 2.25 0.04 -1.21 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 26 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 29 H 0.42 3.49 6.61 -182.60 -1.21 2.28 16 30 H 0.44 5.35 7.49 -182.60 -1.37 3.99 16 31 H 0.15 0.98 6.20 -52.48 -0.33 0.66 16 32 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -32.17 297.43 -6.28 -38.46 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.52 Total: -0.48 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.96 Total: -7.55 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 1.18 Total: -37.97 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.11 Total: -3.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.17 -6.28 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291625781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.573 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds