Wall clock time and date at job start Tue Mar 31 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00093 * 2 1 4 4 H 1.48494 * 109.47243 * 270.00440 * 3 2 1 5 5 H 1.48501 * 109.46942 * 30.00738 * 3 2 1 6 6 H 1.48504 * 109.47046 * 150.00190 * 3 2 1 7 7 C 1.37877 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00436 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99674 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00240 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.40097 * 119.99742 * 180.02562 * 13 11 10 15 15 C 1.39990 * 119.99769 * 179.97438 * 14 13 11 16 16 C 1.38804 * 120.04473 * 359.97438 * 15 14 13 17 17 C 1.38329 * 119.95257 * 180.02562 * 16 15 14 18 18 F 1.35103 * 119.98144 * 179.97438 * 17 16 15 19 19 C 1.38663 * 120.04138 * 359.72585 * 17 16 15 20 20 F 1.35092 * 119.95727 * 180.27674 * 19 17 16 21 21 C 1.38419 * 120.08702 * 0.55021 * 19 17 16 22 22 C 1.38315 * 120.04907 * 359.44689 * 21 19 17 23 23 F 1.35097 * 120.01868 * 180.29524 * 22 21 19 24 24 H 0.97008 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46961 * 59.99563 * 9 7 2 26 26 H 1.08997 * 109.46912 * 299.99630 * 9 7 2 27 27 H 1.08993 * 109.47173 * 60.00008 * 10 9 7 28 28 H 1.08997 * 109.47246 * 299.99688 * 10 9 7 29 29 H 0.96998 * 119.99839 * 0.02562 * 13 11 10 30 30 H 0.96998 * 120.00420 * 359.97438 * 14 13 11 31 31 H 1.08005 * 120.02241 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.97764 * 179.72854 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 8 6.1349 -1.5864 -0.0036 13 7 6.2024 -3.8039 -0.0018 14 7 7.6033 -3.8038 -0.0024 15 6 8.3033 -5.0162 -0.0014 16 6 7.6102 -6.2188 0.0007 17 6 8.3037 -7.4157 0.0022 18 9 7.6297 -8.5866 0.0047 19 6 9.6903 -7.4145 -0.0042 20 9 10.3659 -8.5843 -0.0084 21 6 10.3832 -6.2162 -0.0005 22 6 9.6935 -5.0173 -0.0021 23 9 10.3704 -3.8481 -0.0045 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1506 -0.8907 28 1 3.6585 -3.1502 0.8892 29 1 5.7173 -4.6439 -0.0011 30 1 8.0884 -2.9638 -0.0035 31 1 6.5301 -6.2201 0.0020 32 1 11.4633 -6.2174 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291625781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:55 Heat of formation + Delta-G solvation = -131.973735 kcal Electronic energy + Delta-G solvation = -21485.318934 eV Core-core repulsion = 17417.947374 eV Total energy + Delta-G solvation = -4067.371560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.53191 -50.06163 -49.59546 -41.21801 -39.94492 -37.07023 -35.55887 -33.68742 -32.80055 -31.68078 -29.41925 -27.69523 -24.86108 -23.75437 -23.21953 -21.70567 -19.86696 -19.47858 -19.14522 -18.89743 -18.01327 -17.74681 -17.55311 -16.93478 -16.79663 -16.56165 -16.25725 -16.13616 -16.00607 -15.58247 -15.37299 -15.04654 -14.81886 -14.64739 -14.37601 -13.92604 -13.45977 -13.42537 -12.92326 -12.75097 -12.32133 -12.16064 -11.98293 -11.77092 -11.40062 -11.11411 -10.77260 -10.58638 -10.05437 -8.51027 -8.30330 -6.33244 -0.35355 -0.19173 0.66142 1.34556 1.37562 1.48000 1.50616 2.07128 2.35563 2.53920 2.77989 2.99989 3.06053 3.22723 3.32655 3.71280 3.95936 4.12279 4.34009 4.45991 4.47993 4.50918 4.67380 4.76265 4.95094 5.29116 5.35248 5.44037 5.58187 5.63607 6.04534 6.24293 6.43323 6.74539 7.17420 7.32357 8.85108 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032017 B = 0.003000 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.334957 B = 9329.976540 C =10183.860296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.003 3.997 10 C -0.104 4.104 11 C 0.519 3.481 12 O -0.577 6.577 13 N -0.514 5.514 14 N -0.535 5.535 15 C 0.212 3.788 16 C -0.185 4.185 17 C 0.117 3.883 18 F -0.126 7.126 19 C 0.027 3.973 20 F -0.132 7.132 21 C -0.090 4.090 22 C 0.042 3.958 23 F -0.133 7.133 24 H 0.267 0.733 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.439 0.561 30 H 0.438 0.562 31 H 0.171 0.829 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.518 -16.569 0.005 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.035 4.035 10 C -0.145 4.145 11 C 0.307 3.693 12 O -0.455 6.455 13 N -0.263 5.263 14 N -0.259 5.259 15 C 0.105 3.895 16 C -0.209 4.209 17 C 0.096 3.904 18 F -0.105 7.105 19 C 0.005 3.995 20 F -0.111 7.111 21 C -0.110 4.110 22 C 0.017 3.983 23 F -0.111 7.111 24 H 0.076 0.924 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.285 0.715 30 H 0.281 0.719 31 H 0.188 0.812 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 21.587 -15.726 0.006 26.708 hybrid contribution 0.004 0.662 -0.017 0.663 sum 21.591 -15.064 -0.011 26.327 Atomic orbital electron populations 1.70023 1.07822 1.28050 1.52553 1.25786 0.95433 1.02812 0.94414 0.85858 0.79307 0.79669 0.79036 1.19523 1.20779 1.18323 1.21413 0.91152 0.93798 1.50143 0.92699 1.19262 0.93979 0.93528 0.96763 1.21484 0.86191 1.00478 1.06358 1.21636 0.91132 0.81838 0.74644 1.90691 1.70802 1.32697 1.51272 1.45033 0.93910 1.10618 1.76765 1.43375 0.94361 1.06781 1.81360 1.17503 0.89175 0.85695 0.97152 1.20211 1.02018 0.87750 1.10961 1.17300 0.88183 0.81941 1.02996 1.91556 1.80009 1.45282 1.93623 1.17052 0.87874 0.82363 1.12241 1.91525 1.79760 1.45181 1.94604 1.20841 1.02979 0.87647 0.99547 1.16592 0.86642 0.82286 1.12821 1.91526 1.79645 1.45365 1.94605 0.92442 0.96880 0.97001 0.86644 0.86653 0.71544 0.71888 0.81191 0.79751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.96 21.45 0.30 -57.20 16 2 C 0.01 0.76 5.47 84.65 0.46 1.22 16 3 Si 0.94 45.05 27.47 68.60 1.88 46.93 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.26 -12.26 6.54 99.48 0.65 -11.61 16 7 C -0.53 -28.62 9.66 25.60 0.25 -28.38 16 8 H 0.05 3.12 7.99 -2.92 -0.02 3.10 16 9 C 0.00 0.13 3.33 29.85 0.10 0.23 16 10 C -0.10 -3.32 5.64 29.85 0.17 -3.15 16 11 C 0.52 15.59 7.95 87.66 0.70 16.29 16 12 O -0.58 -22.50 15.82 -3.02 -0.05 -22.54 16 13 N -0.51 -10.66 6.22 -173.53 -1.08 -11.74 16 14 N -0.54 -10.95 6.46 -51.17 -0.33 -11.28 16 15 C 0.21 3.49 6.73 38.16 0.26 3.74 16 16 C -0.19 -2.58 9.46 22.43 0.21 -2.37 16 17 C 0.12 1.83 7.30 22.39 0.16 1.99 16 18 F -0.13 -2.25 17.18 44.97 0.77 -1.48 16 19 C 0.03 0.42 7.30 22.41 0.16 0.58 16 20 F -0.13 -2.30 17.18 44.97 0.77 -1.53 16 21 C -0.09 -1.14 9.99 22.33 0.22 -0.91 16 22 C 0.04 0.65 7.31 22.48 0.16 0.82 16 23 F -0.13 -2.38 16.64 44.97 0.75 -1.63 16 24 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 25 H 0.01 0.62 7.16 -2.38 -0.02 0.60 16 26 H 0.01 0.55 7.53 -2.39 -0.02 0.53 16 27 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.44 5.87 6.61 -213.32 -1.41 4.46 16 30 H 0.44 10.08 7.49 -213.32 -1.60 8.49 16 31 H 0.17 1.65 6.20 -2.91 -0.02 1.63 16 32 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -69.42 297.43 4.03 -65.40 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -1.85 Total: 4.99 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 2.86 Total: -9.93 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -1.11 Total: -80.21 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 2.29 Total: -4.63 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -69.42 4.03 -65.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291625781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.578 kcal (2) G-P(sol) polarization free energy of solvation -69.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds