Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 S 1.81003 * 109.46962 * 120.00028 * 2 1 3 14 14 C 1.76198 * 100.00093 * 294.99792 * 13 2 1 15 15 N 1.32469 * 119.60483 * 0.02562 * 14 13 2 16 16 C 1.32309 * 121.84599 * 179.97438 * 15 14 13 17 17 N 1.38028 * 119.59524 * 179.97438 * 16 15 14 18 18 C 1.40909 * 120.81007 * 359.97438 * 16 15 14 19 19 C 1.43202 * 120.43669 * 180.02562 * 18 16 15 20 20 N 7.56712 * 76.08614 * 60.42827 * 2 1 3 21 21 C 1.39697 * 119.13020 * 0.02562 * 18 16 15 22 22 C 1.39692 * 118.31304 * 359.73384 * 21 18 16 23 23 C 1.43205 * 120.43806 * 180.26194 * 22 21 18 24 24 N 5.44106 * 106.74039 * 114.49455 * 2 1 3 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 28 28 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 29 29 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99384 * 0.02562 * 17 16 15 32 32 H 0.96989 * 120.00199 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.84099 * 180.02562 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6958 -2.2260 -1.7136 11 1 6.5337 -1.0856 -3.8476 12 1 6.5304 0.1923 -1.7867 13 16 2.1333 -0.8533 1.4779 14 6 1.5439 0.2422 2.7257 15 7 0.8668 1.3265 2.3781 16 6 0.4036 2.1786 3.2780 17 7 -0.2958 3.2942 2.8639 18 6 0.6155 1.9613 4.6540 19 6 0.1100 2.8886 5.6212 20 7 -0.2897 3.6249 6.3883 21 6 1.3250 0.8293 5.0624 22 6 1.7931 -0.0486 4.0819 23 6 2.5208 -1.2259 4.4498 24 7 3.0972 -2.1603 4.7415 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7715 -1.2055 30 1 4.0615 -2.2523 -4.0302 31 1 -0.4453 3.4493 1.9181 32 1 -0.6376 3.9230 3.5185 33 1 1.5030 0.6355 6.1098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298517668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = 84.653727 kcal Electronic energy + Delta-G solvation = -19042.535208 eV Core-core repulsion = 16001.459682 eV Total energy + Delta-G solvation = -3041.075526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.61075 -37.01704 -36.54926 -35.01827 -34.70360 -33.00633 -32.02240 -30.26304 -27.57953 -25.26200 -23.97160 -23.39112 -20.77560 -20.62753 -18.50125 -18.09432 -17.22890 -16.44525 -15.70043 -15.65197 -15.22251 -14.71695 -14.48505 -13.85244 -13.73154 -13.59171 -13.29461 -13.10825 -12.90902 -12.86079 -12.60394 -12.37413 -11.85789 -11.69598 -11.37632 -11.24462 -10.88339 -10.69173 -10.60386 -10.19790 -9.88889 -9.65336 -9.50334 -9.24986 -8.53470 -8.46071 -7.36960 -6.11332 -4.14439 0.34333 0.73514 1.67521 2.34726 2.52615 2.53933 2.82208 3.11474 3.17459 3.29060 3.35744 3.38779 3.63430 3.75880 3.99665 4.29015 4.39236 4.65606 4.93502 5.26558 5.33360 5.49857 5.63881 5.75310 5.78686 6.02919 6.43028 6.52862 6.60924 6.69874 6.89451 7.22197 7.41651 7.47204 7.57460 7.71200 7.84965 8.20217 8.90423 9.50968 10.99463 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.004448 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.204687 B = 6293.966964 C = 6928.954472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 H 0.096 0.904 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 S 0.024 5.976 14 C 0.231 3.769 15 N -0.539 5.539 16 C 0.492 3.508 17 N -0.827 5.827 18 C -0.186 4.186 19 C 0.269 3.731 20 N -0.430 5.430 21 C 0.083 3.917 22 C -0.139 4.139 23 C 0.265 3.735 24 N -0.409 5.409 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.415 0.585 32 H 0.411 0.589 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 8.332 12.125 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 H 0.114 0.886 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.197 1.197 13 S 0.274 5.726 14 C -0.024 4.024 15 N -0.263 5.263 16 C 0.243 3.757 17 N -0.367 5.367 18 C -0.202 4.202 19 C -0.046 4.046 20 N -0.106 5.106 21 C 0.052 3.948 22 C -0.155 4.155 23 C -0.051 4.051 24 N -0.085 5.085 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.241 0.759 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.777 6.954 12.619 16.373 hybrid contribution 0.253 1.459 -0.021 1.481 sum -7.525 8.413 12.598 16.915 Atomic orbital electron populations 1.22122 0.94027 1.01958 1.02429 1.23735 0.97636 1.02751 0.95235 0.88579 1.19124 0.96497 0.95647 0.89155 1.21239 0.91453 1.35073 1.08743 0.91905 1.24977 0.98557 0.94960 0.95500 1.69947 1.35737 1.35303 1.12068 0.86597 0.85582 0.78749 0.77212 1.20466 1.21216 1.19685 1.86755 1.62435 1.26658 0.96769 1.24057 0.89288 0.93431 0.95631 1.67954 1.19071 1.05396 1.33838 1.18284 0.84723 0.85818 0.86894 1.42258 1.58567 1.23406 1.12485 1.15827 1.16133 0.99300 0.88914 1.25205 0.93059 0.93009 0.93325 1.81301 1.10754 1.10160 1.08427 1.21203 0.86376 0.87790 0.99449 1.15925 1.11510 0.95574 0.92453 1.24949 0.93281 0.92554 0.94312 1.81239 1.09819 1.10437 1.07037 0.92066 0.92761 0.91422 0.94252 0.95565 0.92798 0.75393 0.75864 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.96 37.16 0.33 -1.85 16 2 C -0.06 -1.17 2.14 -26.74 -0.06 -1.23 16 3 H 0.10 1.75 7.97 -51.92 -0.41 1.33 16 4 C 0.03 0.79 4.44 -27.88 -0.12 0.67 16 5 C -0.53 -13.70 8.53 -34.44 -0.29 -13.99 16 6 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 S 0.02 0.42 19.78 -107.50 -2.13 -1.71 16 14 C 0.23 3.14 6.82 -16.26 -0.11 3.03 16 15 N -0.54 -6.54 6.83 -10.62 -0.07 -6.61 16 16 C 0.49 4.73 7.75 -155.36 -1.20 3.53 16 17 N -0.83 -5.62 8.96 31.28 0.28 -5.34 16 18 C -0.19 -1.67 5.77 -106.41 -0.61 -2.28 16 19 C 0.27 2.52 14.08 -22.47 -0.32 2.21 16 20 N -0.43 -4.82 18.54 41.84 0.78 -4.05 16 21 C 0.08 0.73 9.61 -38.49 -0.37 0.36 16 22 C -0.14 -1.64 5.77 -106.41 -0.61 -2.25 16 23 C 0.26 3.67 14.28 -22.47 -0.32 3.34 16 24 N -0.41 -6.54 18.54 41.84 0.78 -5.77 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.89 5.65 -51.93 -0.29 0.60 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.41 2.41 8.95 -40.82 -0.37 2.05 16 32 H 0.41 2.24 7.63 -40.82 -0.31 1.93 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -29.92 317.12 -6.69 -36.61 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.03 Total: -2.31 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -3.79 Total: -6.87 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 2.50 Total: -46.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.13 Total: -1.71 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.92 -6.69 -36.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298517668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.267 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds