Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 S 1.81003 * 109.46962 * 120.00028 * 2 1 3 14 14 C 1.76198 * 100.00093 * 294.99792 * 13 2 1 15 15 N 1.32469 * 119.60483 * 0.02562 * 14 13 2 16 16 C 1.32309 * 121.84599 * 179.97438 * 15 14 13 17 17 N 1.38028 * 119.59524 * 179.97438 * 16 15 14 18 18 C 1.40909 * 120.81007 * 359.97438 * 16 15 14 19 19 C 1.43202 * 120.43669 * 180.02562 * 18 16 15 20 20 N 7.56712 * 76.08614 * 60.42827 * 2 1 3 21 21 C 1.39697 * 119.13020 * 0.02562 * 18 16 15 22 22 C 1.39692 * 118.31304 * 359.73384 * 21 18 16 23 23 C 1.43205 * 120.43806 * 180.26194 * 22 21 18 24 24 N 5.44106 * 106.74039 * 114.49455 * 2 1 3 25 25 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 26 26 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 28 28 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 29 29 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99384 * 0.02562 * 17 16 15 32 32 H 0.96989 * 120.00199 * 180.02562 * 17 16 15 33 33 H 1.08001 * 120.84099 * 180.02562 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6958 -2.2260 -1.7136 11 1 6.5337 -1.0856 -3.8476 12 1 6.5304 0.1923 -1.7867 13 16 2.1333 -0.8533 1.4779 14 6 1.5439 0.2422 2.7257 15 7 0.8668 1.3265 2.3781 16 6 0.4036 2.1786 3.2780 17 7 -0.2958 3.2942 2.8639 18 6 0.6155 1.9613 4.6540 19 6 0.1100 2.8886 5.6212 20 7 -0.2897 3.6249 6.3883 21 6 1.3250 0.8293 5.0624 22 6 1.7931 -0.0486 4.0819 23 6 2.5208 -1.2259 4.4498 24 7 3.0972 -2.1603 4.7415 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7715 -1.2055 30 1 4.0615 -2.2523 -4.0302 31 1 -0.4453 3.4493 1.9181 32 1 -0.6376 3.9230 3.5185 33 1 1.5030 0.6355 6.1098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298517668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = 67.310911 kcal Electronic energy + Delta-G solvation = -19043.287249 eV Core-core repulsion = 16001.459682 eV Total energy + Delta-G solvation = -3041.827567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51004 -37.97087 -37.52221 -36.39164 -35.83351 -34.24588 -33.58037 -31.13277 -29.33281 -26.20964 -25.19747 -24.81971 -22.30354 -21.56296 -19.40611 -18.99307 -18.47365 -18.14530 -16.90321 -16.54272 -16.45655 -16.13230 -15.75439 -14.89229 -14.70338 -14.51480 -14.47803 -14.30687 -14.07947 -14.00463 -13.87248 -13.47777 -13.42890 -13.22955 -12.85861 -12.60768 -12.43295 -12.35506 -12.05746 -11.48957 -11.24054 -11.07285 -11.03221 -10.68422 -10.51661 -9.42029 -8.58524 -8.18182 -6.26232 -0.57600 -0.09595 0.49493 1.25957 1.41684 1.43607 1.52826 1.56223 1.64528 1.73385 2.24462 2.31240 2.42974 2.76243 2.84203 3.06374 3.17742 3.48044 3.74604 4.13260 4.23683 4.34847 4.54009 4.63091 4.69270 4.99486 5.03802 5.18457 5.37829 5.45943 5.57677 5.81000 5.93699 6.17755 6.20709 6.44273 6.54504 6.87223 6.93494 7.42271 8.93185 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.004448 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.204687 B = 6293.966964 C = 6928.954472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 H 0.094 0.906 4 C 0.040 3.960 5 C -0.531 4.531 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.262 1.262 13 S -0.042 6.042 14 C 0.240 3.760 15 N -0.550 5.550 16 C 0.494 3.506 17 N -0.809 5.809 18 C -0.168 4.168 19 C 0.291 3.709 20 N -0.451 5.451 21 C 0.107 3.893 22 C -0.143 4.143 23 C 0.284 3.716 24 N -0.453 5.453 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.019 0.981 29 H -0.001 1.001 30 H 0.262 0.738 31 H 0.422 0.578 32 H 0.420 0.580 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 10.473 14.217 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 H 0.112 0.888 4 C 0.002 3.998 5 C -0.569 4.569 6 H 0.082 0.918 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.186 1.186 13 S 0.206 5.794 14 C -0.016 4.016 15 N -0.274 5.274 16 C 0.243 3.757 17 N -0.349 5.349 18 C -0.183 4.183 19 C -0.024 4.024 20 N -0.128 5.128 21 C 0.076 3.924 22 C -0.159 4.159 23 C -0.031 4.031 24 N -0.130 5.130 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.037 0.963 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.255 0.745 32 H 0.253 0.747 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.415 9.168 14.726 19.280 hybrid contribution 0.308 0.968 -0.531 1.147 sum -8.107 10.136 14.195 19.234 Atomic orbital electron populations 1.22054 0.91632 1.02059 1.03730 1.23370 0.99418 1.01480 0.93379 0.88759 1.18921 0.95253 0.94454 0.91221 1.21616 0.93039 1.34021 1.08209 0.91763 1.25785 1.02837 0.94993 0.95458 1.70064 1.37322 1.36743 1.12868 0.85657 0.80593 0.78923 0.77236 1.20486 1.20878 1.18605 1.86828 1.65225 1.29042 0.98338 1.23440 0.90219 0.93386 0.94573 1.67818 1.19416 1.05426 1.34751 1.18363 0.84494 0.85931 0.86873 1.42300 1.56933 1.22298 1.13396 1.15759 1.15173 0.98912 0.88466 1.24954 0.92349 0.92382 0.92699 1.81361 1.11404 1.10870 1.09170 1.21481 0.84224 0.86240 1.00414 1.15867 1.12277 0.95658 0.92124 1.25203 0.92425 0.92359 0.93131 1.81253 1.11448 1.11779 1.08535 0.91450 0.93299 0.89260 0.96304 0.98304 0.92870 0.74503 0.74701 0.79519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.96 71.98 0.65 -3.33 16 2 C -0.05 -1.74 2.14 30.59 0.07 -1.67 16 3 H 0.09 3.41 7.97 -2.40 -0.02 3.40 16 4 C 0.04 1.92 4.44 29.85 0.13 2.05 16 5 C -0.53 -28.27 8.53 25.60 0.22 -28.05 16 6 H 0.06 3.33 7.60 -2.91 -0.02 3.31 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 9 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 13 S -0.04 -1.45 19.78 -56.49 -1.12 -2.57 16 14 C 0.24 6.13 6.82 85.25 0.58 6.71 16 15 N -0.55 -11.99 6.83 -187.51 -1.28 -13.27 16 16 C 0.49 7.73 7.75 133.86 1.04 8.77 16 17 N -0.81 -8.01 8.96 -54.95 -0.49 -8.50 16 18 C -0.17 -2.31 5.77 -21.03 -0.12 -2.43 16 19 C 0.29 4.28 14.08 88.33 1.24 5.52 16 20 N -0.45 -8.54 18.54 19.00 0.35 -8.19 16 21 C 0.11 1.46 9.61 22.97 0.22 1.68 16 22 C -0.14 -3.04 5.77 -21.02 -0.12 -3.16 16 23 C 0.28 7.54 14.28 88.33 1.26 8.80 16 24 N -0.45 -14.37 18.54 19.01 0.35 -14.02 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 2.20 5.65 -2.39 -0.01 2.18 16 28 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 31 H 0.42 3.44 8.95 -92.71 -0.83 2.61 16 32 H 0.42 2.94 7.63 -92.72 -0.71 2.23 16 33 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -66.63 317.12 5.41 -61.22 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: -0.34 Total: -1.72 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.62 Total: -4.25 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -0.78 Total: -98.28 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -1.12 Total: -2.57 kcal Total: -66.63 5.41 -61.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298517668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.532 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds