Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 S 1.81002 * 109.47326 * 239.99816 * 2 1 3 14 14 C 1.76201 * 99.99823 * 64.99963 * 13 2 1 15 15 N 1.32468 * 119.60538 * 0.02562 * 14 13 2 16 16 C 1.32308 * 121.84461 * 179.97438 * 15 14 13 17 17 N 1.38023 * 119.59294 * 179.97438 * 16 15 14 18 18 C 1.40911 * 120.81003 * 359.97438 * 16 15 14 19 19 C 1.43196 * 120.43852 * 180.02562 * 18 16 15 20 20 N 7.56715 * 76.11475 * 299.58576 * 2 1 3 21 21 C 1.39695 * 119.12893 * 0.02562 * 18 16 15 22 22 C 1.39691 * 118.31647 * 359.73513 * 21 18 16 23 23 C 1.43196 * 120.44145 * 180.25903 * 22 21 18 24 24 N 5.44097 * 107.05035 * 245.66644 * 2 1 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 30 30 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99998 * 0.02562 * 17 16 15 32 32 H 0.97004 * 119.99909 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.83981 * 180.02562 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 16 2.1334 -0.8533 -1.4778 14 6 1.5439 0.2422 -2.7257 15 7 0.8677 1.3269 -2.3781 16 6 0.4053 2.1796 -3.2779 17 7 -0.2941 3.2950 -2.8638 18 6 0.6182 1.9628 -4.6539 19 6 0.1147 2.8911 -5.6210 20 7 -0.2860 3.6269 -6.3882 21 6 1.3269 0.8303 -5.0622 22 6 1.8029 -0.0429 -4.0812 23 6 2.5397 -1.2145 -4.4485 24 7 3.1253 -2.1434 -4.7397 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2056 30 1 6.0256 -1.5084 3.1481 31 1 -0.4437 3.4502 -1.9180 32 1 -0.6361 3.9238 -3.5185 33 1 1.5064 0.6373 -6.1095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298517669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = 89.126107 kcal Electronic energy + Delta-G solvation = -19061.224909 eV Core-core repulsion = 16020.343320 eV Total energy + Delta-G solvation = -3040.881589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.62320 -37.01728 -36.55005 -35.03850 -34.82626 -33.00469 -32.09566 -30.27195 -28.13890 -25.27994 -23.98466 -23.20562 -20.71724 -20.62197 -18.51830 -18.11523 -17.24183 -16.83275 -15.73149 -15.71395 -15.23529 -14.80978 -14.38706 -13.81507 -13.73440 -13.59480 -13.30312 -13.10906 -13.02235 -12.82487 -12.62351 -12.38026 -12.31027 -11.87200 -11.57518 -11.43008 -11.02418 -10.66388 -10.26335 -10.14073 -9.89561 -9.70484 -9.63461 -9.37155 -8.63562 -8.54651 -7.38857 -6.12726 -4.12952 0.33055 0.73032 1.63284 2.34081 2.46971 2.53127 2.81196 3.09044 3.17635 3.24548 3.32737 3.33182 3.62998 3.75591 3.99466 4.28087 4.36190 4.64686 4.92350 5.21099 5.32653 5.48345 5.49122 5.61358 5.77344 5.89114 6.30613 6.33051 6.51172 6.64428 6.87554 6.93334 7.05487 7.21826 7.57677 7.60174 7.69986 8.39666 8.92124 9.47412 10.99773 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.004441 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.283700 B = 6303.409937 C = 7057.888592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 H 0.102 0.898 4 C -0.002 4.002 5 C -0.528 4.528 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.265 1.265 13 S 0.032 5.968 14 C 0.231 3.769 15 N -0.540 5.540 16 C 0.492 3.508 17 N -0.827 5.827 18 C -0.185 4.185 19 C 0.268 3.732 20 N -0.429 5.429 21 C 0.083 3.917 22 C -0.137 4.137 23 C 0.264 3.736 24 N -0.407 5.407 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.415 0.585 32 H 0.411 0.589 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 6.717 -10.380 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.188 4.188 3 H 0.120 0.880 4 C -0.041 4.041 5 C -0.567 4.567 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.189 1.189 13 S 0.282 5.718 14 C -0.024 4.024 15 N -0.264 5.264 16 C 0.243 3.757 17 N -0.367 5.367 18 C -0.201 4.201 19 C -0.046 4.046 20 N -0.106 5.106 21 C 0.052 3.948 22 C -0.153 4.153 23 C -0.052 4.052 24 N -0.083 5.083 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.242 0.758 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.228 5.394 -10.931 17.266 hybrid contribution -1.072 0.948 0.656 1.574 sum -13.300 6.342 -10.276 17.964 Atomic orbital electron populations 1.22165 0.93917 1.01999 1.02738 1.23502 0.97497 1.03064 0.94780 0.88013 1.19596 0.98093 0.95359 0.91053 1.21119 0.89128 1.36178 1.10229 0.90097 1.24980 0.94688 0.95610 0.97682 1.69900 1.06518 1.44641 1.32164 0.86871 0.80476 0.80770 0.81783 1.20139 1.21239 1.18949 1.86794 1.62307 1.26389 0.96326 1.24016 0.89327 0.93490 0.95609 1.67929 1.19252 1.05327 1.33875 1.18268 0.84713 0.85814 0.86900 1.42257 1.58567 1.23423 1.12473 1.15823 1.16170 0.99172 0.88912 1.25203 0.93057 0.93027 0.93332 1.81307 1.10717 1.10162 1.08399 1.21207 0.86324 0.87780 0.99478 1.15907 1.11061 0.95890 0.92415 1.24942 0.93317 0.92580 0.94396 1.81245 1.09636 1.10488 1.06952 0.92747 0.91044 0.92050 0.94369 0.96152 0.92559 0.75415 0.75841 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.96 37.16 0.33 -1.73 16 2 C -0.06 -1.03 2.14 -26.73 -0.06 -1.09 16 3 H 0.10 1.81 7.96 -51.92 -0.41 1.40 16 4 C 0.00 -0.05 3.51 -27.89 -0.10 -0.15 16 5 C -0.53 -13.89 9.09 -34.44 -0.31 -14.20 16 6 H 0.08 2.31 7.84 -52.49 -0.41 1.89 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 9 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 13 S 0.03 0.55 19.78 -107.50 -2.13 -1.57 16 14 C 0.23 3.11 6.82 -16.26 -0.11 3.00 16 15 N -0.54 -6.45 6.83 -10.62 -0.07 -6.52 16 16 C 0.49 4.67 7.75 -155.37 -1.20 3.46 16 17 N -0.83 -5.49 8.96 31.28 0.28 -5.20 16 18 C -0.19 -1.65 5.77 -106.42 -0.61 -2.26 16 19 C 0.27 2.51 14.08 -22.47 -0.32 2.19 16 20 N -0.43 -4.80 18.54 41.84 0.78 -4.03 16 21 C 0.08 0.73 9.61 -38.50 -0.37 0.36 16 22 C -0.14 -1.62 5.77 -106.42 -0.61 -2.23 16 23 C 0.26 3.68 14.28 -22.47 -0.32 3.36 16 24 N -0.41 -6.58 18.54 41.84 0.78 -5.81 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.89 5.65 -51.93 -0.29 0.59 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.81 7.20 -51.93 -0.37 0.44 16 29 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.41 2.32 8.95 -40.82 -0.37 1.95 16 32 H 0.41 2.19 7.63 -40.82 -0.31 1.88 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -30.80 313.52 -6.32 -37.12 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.00 Total: -1.47 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.78 Total: -7.37 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 2.53 Total: -47.31 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.13 Total: -1.57 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.80 -6.32 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298517669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.242 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds