Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 H 1.08002 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00273 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47300 * 89.99362 * 9 7 5 11 11 H 1.48494 * 109.47121 * 209.99735 * 9 7 5 12 12 H 1.48502 * 109.46604 * 329.99774 * 9 7 5 13 13 S 1.81002 * 109.47326 * 239.99816 * 2 1 3 14 14 C 1.76201 * 99.99823 * 64.99963 * 13 2 1 15 15 N 1.32468 * 119.60538 * 0.02562 * 14 13 2 16 16 C 1.32308 * 121.84461 * 179.97438 * 15 14 13 17 17 N 1.38023 * 119.59294 * 179.97438 * 16 15 14 18 18 C 1.40911 * 120.81003 * 359.97438 * 16 15 14 19 19 C 1.43196 * 120.43852 * 180.02562 * 18 16 15 20 20 N 7.56715 * 76.11475 * 299.58576 * 2 1 3 21 21 C 1.39695 * 119.12893 * 0.02562 * 18 16 15 22 22 C 1.39691 * 118.31647 * 359.73513 * 21 18 16 23 23 C 1.43196 * 120.44145 * 180.25903 * 22 21 18 24 24 N 5.44097 * 107.05035 * 245.66644 * 2 1 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 30 30 H 0.97001 * 120.00015 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99998 * 0.02562 * 17 16 15 32 32 H 0.97004 * 119.99909 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.83981 * 180.02562 * 21 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5411 -1.1010 2.4131 9 14 3.3016 -2.1097 3.6948 10 1 3.1710 -3.5395 3.3157 11 1 4.0449 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 16 2.1334 -0.8533 -1.4778 14 6 1.5439 0.2422 -2.7257 15 7 0.8677 1.3269 -2.3781 16 6 0.4053 2.1796 -3.2779 17 7 -0.2941 3.2950 -2.8638 18 6 0.6182 1.9628 -4.6539 19 6 0.1147 2.8911 -5.6210 20 7 -0.2860 3.6269 -6.3882 21 6 1.3269 0.8303 -5.0622 22 6 1.8029 -0.0429 -4.0812 23 6 2.5397 -1.2145 -4.4485 24 7 3.1253 -2.1434 -4.7397 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2056 30 1 6.0256 -1.5084 3.1481 31 1 -0.4437 3.4502 -1.9180 32 1 -0.6361 3.9238 -3.5185 33 1 1.5064 0.6373 -6.1095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298517669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = 70.088456 kcal Electronic energy + Delta-G solvation = -19062.050443 eV Core-core repulsion = 16020.343320 eV Total energy + Delta-G solvation = -3041.707123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51782 -37.97898 -37.52955 -36.42587 -35.84120 -34.27693 -33.66474 -31.14029 -29.80823 -26.21646 -24.90533 -24.80979 -22.21592 -21.57155 -19.42153 -19.00950 -18.86079 -18.15493 -16.95614 -16.48494 -16.41056 -16.13708 -15.75804 -14.92032 -14.71548 -14.61595 -14.52186 -14.27359 -14.13746 -14.04413 -13.90901 -13.70281 -13.46971 -13.35269 -12.96786 -12.63659 -12.37017 -12.05236 -11.75978 -11.61902 -11.39649 -11.08374 -11.02009 -10.71834 -10.70640 -9.42609 -8.59056 -8.22982 -6.27028 -0.58635 -0.10574 0.47541 1.23981 1.39815 1.40431 1.50685 1.55438 1.63645 1.72238 2.23543 2.30332 2.39224 2.75459 2.83429 3.05605 3.12893 3.47086 3.73565 4.12365 4.14545 4.30338 4.53081 4.62035 4.65257 4.98171 4.99397 5.11987 5.19362 5.37333 5.46511 5.65805 5.92692 6.17299 6.30683 6.43657 6.53559 6.81111 6.92637 7.36438 8.92739 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022072 B = 0.004441 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.283700 B = 6303.409937 C = 7057.888592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 H 0.091 0.909 4 C -0.002 4.002 5 C -0.523 4.523 6 H 0.043 0.957 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.237 1.237 13 S -0.046 6.046 14 C 0.240 3.760 15 N -0.549 5.549 16 C 0.494 3.506 17 N -0.808 5.808 18 C -0.168 4.168 19 C 0.291 3.709 20 N -0.451 5.451 21 C 0.107 3.893 22 C -0.144 4.144 23 C 0.283 3.717 24 N -0.454 5.454 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.423 0.577 32 H 0.420 0.580 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.210 8.043 -11.144 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 H 0.110 0.890 4 C -0.040 4.040 5 C -0.561 4.561 6 H 0.061 0.939 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.160 1.160 13 S 0.201 5.799 14 C -0.016 4.016 15 N -0.273 5.273 16 C 0.244 3.756 17 N -0.349 5.349 18 C -0.183 4.183 19 C -0.024 4.024 20 N -0.128 5.128 21 C 0.076 3.924 22 C -0.160 4.160 23 C -0.032 4.032 24 N -0.131 5.131 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.255 0.745 32 H 0.253 0.747 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.284 6.792 -11.711 20.417 hybrid contribution -0.200 0.757 0.706 1.055 sum -15.484 7.549 -11.004 20.441 Atomic orbital electron populations 1.22102 0.90826 1.02649 1.04152 1.23267 0.99730 1.01476 0.92864 0.89035 1.19527 0.94696 0.96111 0.93676 1.21423 0.91837 1.34292 1.08556 0.93887 1.25922 0.95440 0.96992 1.00606 1.70067 1.08565 1.46918 1.33451 0.85815 0.80241 0.79343 0.78253 1.19918 1.21428 1.16012 1.86933 1.65302 1.28992 0.98630 1.23404 0.90168 0.93479 0.94513 1.67808 1.19547 1.05274 1.34680 1.18355 0.84469 0.85958 0.86853 1.42293 1.56898 1.22264 1.13412 1.15756 1.15263 0.98775 0.88532 1.24951 0.92340 0.92397 0.92705 1.81366 1.11393 1.10879 1.09123 1.21478 0.84230 0.86287 1.00400 1.15876 1.11935 0.95998 0.92231 1.25228 0.92438 0.92384 0.93142 1.81254 1.11337 1.11934 1.08549 0.92488 0.89470 0.90676 0.93448 0.95986 0.92731 0.74457 0.74691 0.79567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.96 71.98 0.65 -2.87 16 2 C -0.04 -1.52 2.14 30.59 0.07 -1.46 16 3 H 0.09 3.25 7.96 -2.39 -0.02 3.23 16 4 C 0.00 -0.06 3.51 29.85 0.10 0.04 16 5 C -0.52 -28.29 9.09 25.60 0.23 -28.05 16 6 H 0.04 2.59 7.84 -2.91 -0.02 2.57 16 7 C 0.01 0.42 5.47 84.66 0.46 0.88 16 8 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 9 Si 0.94 42.53 27.47 68.60 1.88 44.41 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 13 S -0.05 -1.60 19.78 -56.49 -1.12 -2.72 16 14 C 0.24 6.20 6.82 85.25 0.58 6.78 16 15 N -0.55 -11.89 6.83 -187.51 -1.28 -13.17 16 16 C 0.49 7.73 7.75 133.86 1.04 8.77 16 17 N -0.81 -7.81 8.96 -54.96 -0.49 -8.30 16 18 C -0.17 -2.36 5.77 -21.03 -0.12 -2.48 16 19 C 0.29 4.34 14.08 88.33 1.24 5.58 16 20 N -0.45 -8.62 18.54 19.00 0.35 -8.27 16 21 C 0.11 1.51 9.61 22.97 0.22 1.73 16 22 C -0.14 -3.16 5.77 -21.03 -0.12 -3.28 16 23 C 0.28 7.79 14.28 88.33 1.26 9.06 16 24 N -0.45 -14.88 18.54 19.00 0.35 -14.53 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 1.93 5.65 -2.39 -0.01 1.91 16 27 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.05 1.93 7.20 -2.39 -0.02 1.91 16 29 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 30 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.42 3.23 8.95 -92.71 -0.83 2.40 16 32 H 0.42 2.88 7.63 -92.71 -0.71 2.17 16 33 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -69.98 313.52 5.21 -64.76 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -0.40 Total: 1.43 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.61 Total: -5.31 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -0.77 Total: -102.57 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -1.12 Total: -2.72 kcal Total: -69.98 5.21 -64.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298517669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.850 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds