Wall clock time and date at job start Tue Mar 31 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48500 * 109.46653 * 270.00332 * 3 2 1 5 5 H 1.48500 * 109.47157 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.46985 * 150.00210 * 3 2 1 7 7 C 1.39937 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99486 * 197.88898 * 7 2 1 9 9 C 1.41406 * 119.99954 * 17.89644 * 7 2 1 10 10 C 1.40779 * 120.21201 * 24.43833 * 9 7 2 11 11 C 1.37644 * 119.89550 * 180.02562 * 10 9 7 12 12 C 1.38522 * 120.32704 * 359.74321 * 11 10 9 13 13 C 1.39304 * 120.41876 * 0.51917 * 12 11 10 14 14 N 1.39687 * 119.94972 * 179.76164 * 13 12 11 15 15 C 1.46497 * 119.99849 * 359.71886 * 14 13 12 16 16 C 1.50703 * 109.47080 * 180.02562 * 15 14 13 17 17 C 1.35305 * 126.66191 * 90.30178 * 16 15 14 18 18 C 1.42306 * 103.92158 * 180.02562 * 17 16 15 19 19 C 1.48232 * 126.94518 * 179.90823 * 18 17 16 20 20 O 1.21410 * 120.00260 * 359.71253 * 19 18 17 21 21 O 1.34644 * 120.00211 * 179.43183 * 19 18 17 22 22 N 1.31021 * 106.11135 * 359.65061 * 18 17 16 23 23 O 1.20907 * 111.42904 * 0.22249 * 22 18 17 24 24 C 1.38310 * 120.09649 * 359.48211 * 13 12 11 25 25 H 0.96997 * 120.00114 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.05055 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83776 * 180.02562 * 11 10 9 28 28 H 1.07991 * 119.79268 * 180.27245 * 12 11 10 29 29 H 0.96999 * 119.99844 * 179.72476 * 14 13 12 30 30 H 1.09003 * 109.47407 * 59.99881 * 15 14 13 31 31 H 1.09003 * 109.47235 * 300.00344 * 15 14 13 32 32 H 1.08005 * 128.04367 * 359.97438 * 17 16 15 33 33 H 0.96703 * 117.00286 * 179.97438 * 21 19 18 34 34 H 1.08005 * 120.16148 * 180.23840 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0487 -1.2344 0.2879 9 6 1.3521 -2.4070 -0.3752 10 6 0.2216 -2.3615 -1.2129 11 6 -0.4121 -3.5287 -1.5742 12 6 0.0602 -4.7499 -1.1219 13 6 1.1745 -4.8102 -0.2881 14 7 1.6394 -6.0466 0.1663 15 6 0.9515 -7.2781 -0.2291 16 6 1.6465 -8.4629 0.3909 17 6 1.3728 -9.0224 1.5921 18 6 2.3059 -10.0922 1.6920 19 6 2.4520 -11.0448 2.8182 20 8 1.7306 -10.9509 3.7902 21 8 3.3810 -12.0177 2.7609 22 7 3.0062 -10.0685 0.5848 23 8 2.6507 -9.1712 -0.1435 24 6 1.8246 -3.6481 0.0858 25 1 -0.4850 0.8400 0.0004 26 1 -0.1480 -1.4120 -1.5715 27 1 -1.2791 -3.4927 -2.2172 28 1 -0.4410 -5.6607 -1.4143 29 1 2.4176 -6.0896 0.7437 30 1 0.9706 -7.3724 -1.3149 31 1 -0.0824 -7.2431 0.1143 32 1 0.6214 -8.7256 2.3089 33 1 3.4389 -12.6147 3.5195 34 1 2.6910 -3.6939 0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313407047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:10 Heat of formation + Delta-G solvation = -1.560657 kcal Electronic energy + Delta-G solvation = -20845.414282 eV Core-core repulsion = 17325.554597 eV Total energy + Delta-G solvation = -3519.859684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.48287 -40.47464 -37.99864 -36.63902 -35.64115 -34.40980 -33.49185 -32.03038 -29.82021 -28.36134 -26.17384 -25.49424 -25.12649 -23.17871 -21.35588 -20.78149 -20.22814 -18.38456 -18.22503 -17.85240 -17.30670 -16.86181 -15.99399 -15.52537 -15.41173 -14.71569 -14.54340 -14.29532 -13.99751 -13.79246 -13.16079 -12.77544 -12.53058 -12.16644 -12.13983 -12.02262 -11.58703 -11.40624 -11.19932 -11.11659 -10.95621 -10.66016 -10.45352 -10.10422 -9.72937 -9.37140 -9.30360 -8.86079 -7.44659 -6.75477 -6.36074 -4.35552 0.54535 1.17057 2.18008 2.45219 2.61962 2.82040 3.08518 3.12051 3.16909 3.30445 3.62623 3.94171 4.12892 4.35297 4.54655 4.67090 4.83706 5.03456 5.44018 5.52449 5.60327 5.79171 5.87106 6.23900 6.44310 6.89107 6.98089 7.07635 7.25678 7.27139 7.29599 7.63895 7.66613 7.83550 8.08574 8.16913 8.42118 8.43802 8.72259 8.95076 9.04785 10.20709 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.002750 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.772237 B =10180.636540 C =10571.148392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.141 3.859 10 C -0.196 4.196 11 C -0.074 4.074 12 C -0.302 4.302 13 C 0.223 3.777 14 N -0.761 5.761 15 C 0.216 3.784 16 C -0.028 4.028 17 C -0.162 4.162 18 C -0.023 4.023 19 C 0.574 3.426 20 O -0.492 6.492 21 O -0.499 6.499 22 N -0.304 5.304 23 O 0.142 5.858 24 C -0.285 4.285 25 H 0.280 0.720 26 H 0.115 0.885 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.392 0.608 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.421 0.579 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -15.738 1.976 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.138 3.862 10 C -0.216 4.216 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.126 3.874 14 N -0.397 5.397 15 C 0.090 3.910 16 C -0.091 4.091 17 C -0.185 4.185 18 C -0.179 4.179 19 C 0.415 3.585 20 O -0.377 6.377 21 O -0.310 6.310 22 N 0.000 5.000 23 O 0.060 5.940 24 C -0.309 4.309 25 H 0.091 0.909 26 H 0.133 0.867 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.226 0.774 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.206 0.794 33 H 0.280 0.720 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.582 -16.234 1.464 16.503 hybrid contribution 0.064 0.586 1.312 1.438 sum 2.645 -15.649 2.776 16.112 Atomic orbital electron populations 1.69851 1.07559 1.29103 1.35021 1.25902 0.94695 1.01242 0.92216 0.86339 0.80508 0.80704 0.79307 1.19275 1.20381 1.18674 1.19575 0.98130 0.91250 1.40328 0.90545 1.17341 0.90342 0.91257 0.87269 1.21213 1.00376 0.96784 1.03245 1.20437 0.97709 0.92822 0.98387 1.19846 1.03251 0.96654 1.12787 1.17382 0.93340 0.83230 0.93491 1.44325 1.34923 1.01990 1.58505 1.19543 0.94280 0.77857 0.99292 1.24778 0.91874 0.98095 0.94341 1.22509 1.02344 0.95233 0.98404 1.22206 1.00156 1.00431 0.95139 1.19132 0.77147 0.78418 0.83844 1.90948 1.43274 1.71455 1.32069 1.84598 1.54673 1.41764 1.50001 1.74374 1.18057 1.05249 1.02352 1.84875 1.39782 1.30644 1.38741 1.20391 1.06550 0.91410 1.12507 0.90949 0.86696 0.89481 0.89506 0.77435 0.90052 0.89027 0.79428 0.71987 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.24 10.96 55.55 0.61 -19.63 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.50 29.60 -169.99 -5.03 13.47 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.17 9.05 -37.74 -0.34 -12.51 16 8 H 0.08 1.94 7.91 -52.48 -0.41 1.53 16 9 C 0.14 3.70 5.57 -106.85 -0.60 3.10 16 10 C -0.20 -5.01 8.69 -38.84 -0.34 -5.35 16 11 C -0.07 -1.69 10.01 -39.69 -0.40 -2.09 16 12 C -0.30 -6.31 9.32 -39.08 -0.36 -6.68 16 13 C 0.22 4.62 6.64 -83.86 -0.56 4.07 16 14 N -0.76 -12.12 5.72 -59.86 -0.34 -12.47 16 15 C 0.22 2.63 5.46 -5.19 -0.03 2.60 16 16 C -0.03 -0.31 6.84 -35.35 -0.24 -0.55 16 17 C -0.16 -1.77 10.92 -39.06 -0.43 -2.20 16 18 C -0.02 -0.28 7.24 -82.54 -0.60 -0.88 16 19 C 0.57 6.38 8.36 34.84 0.29 6.67 16 20 O -0.49 -6.37 17.74 -19.20 -0.34 -6.71 16 21 O -0.50 -4.18 13.44 -40.34 -0.54 -4.72 16 22 N -0.30 -3.87 12.12 33.29 0.40 -3.47 16 23 O 0.14 1.72 11.18 17.25 0.19 1.91 16 24 C -0.28 -6.76 9.63 -38.68 -0.37 -7.13 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.12 3.05 6.15 -52.48 -0.32 2.73 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.09 1.55 6.70 -52.49 -0.35 1.20 16 29 H 0.39 5.89 8.47 -40.82 -0.35 5.54 16 30 H 0.08 0.95 7.93 -51.93 -0.41 0.53 16 31 H 0.09 1.04 7.95 -51.93 -0.41 0.62 16 32 H 0.19 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.42 1.22 9.11 45.56 0.42 1.64 16 34 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -30.15 311.65 -6.66 -36.81 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -2.25 Total: 9.21 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -4.06 Total: -19.11 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.67 Total: -35.56 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.69 Total: -9.52 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.15 -6.66 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.253 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds