Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 120.00138 * 2 1 4 4 H 1.48500 * 109.46653 * 270.00332 * 3 2 1 5 5 H 1.48500 * 109.47157 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.46985 * 150.00210 * 3 2 1 7 7 C 1.39937 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99486 * 197.88898 * 7 2 1 9 9 C 1.41406 * 119.99954 * 17.89644 * 7 2 1 10 10 C 1.40779 * 120.21201 * 24.43833 * 9 7 2 11 11 C 1.37644 * 119.89550 * 180.02562 * 10 9 7 12 12 C 1.38522 * 120.32704 * 359.74321 * 11 10 9 13 13 C 1.39304 * 120.41876 * 0.51917 * 12 11 10 14 14 N 1.39687 * 119.94972 * 179.76164 * 13 12 11 15 15 C 1.46497 * 119.99849 * 359.71886 * 14 13 12 16 16 C 1.50703 * 109.47080 * 180.02562 * 15 14 13 17 17 C 1.35305 * 126.66191 * 90.30178 * 16 15 14 18 18 C 1.42306 * 103.92158 * 180.02562 * 17 16 15 19 19 C 1.48232 * 126.94518 * 179.90823 * 18 17 16 20 20 O 1.21410 * 120.00260 * 359.71253 * 19 18 17 21 21 O 1.34644 * 120.00211 * 179.43183 * 19 18 17 22 22 N 1.31021 * 106.11135 * 359.65061 * 18 17 16 23 23 O 1.20907 * 111.42904 * 0.22249 * 22 18 17 24 24 C 1.38310 * 120.09649 * 359.48211 * 13 12 11 25 25 H 0.96997 * 120.00114 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.05055 * 0.02562 * 10 9 7 27 27 H 1.08001 * 119.83776 * 180.02562 * 11 10 9 28 28 H 1.07991 * 119.79268 * 180.27245 * 12 11 10 29 29 H 0.96999 * 119.99844 * 179.72476 * 14 13 12 30 30 H 1.09003 * 109.47407 * 59.99881 * 15 14 13 31 31 H 1.09003 * 109.47235 * 300.00344 * 15 14 13 32 32 H 1.08005 * 128.04367 * 359.97438 * 17 16 15 33 33 H 0.96703 * 117.00286 * 179.97438 * 21 19 18 34 34 H 1.08005 * 120.16148 * 180.23840 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 0.0005 8 1 3.0487 -1.2344 0.2879 9 6 1.3521 -2.4070 -0.3752 10 6 0.2216 -2.3615 -1.2129 11 6 -0.4121 -3.5287 -1.5742 12 6 0.0602 -4.7499 -1.1219 13 6 1.1745 -4.8102 -0.2881 14 7 1.6394 -6.0466 0.1663 15 6 0.9515 -7.2781 -0.2291 16 6 1.6465 -8.4629 0.3909 17 6 1.3728 -9.0224 1.5921 18 6 2.3059 -10.0922 1.6920 19 6 2.4520 -11.0448 2.8182 20 8 1.7306 -10.9509 3.7902 21 8 3.3810 -12.0177 2.7609 22 7 3.0062 -10.0685 0.5848 23 8 2.6507 -9.1712 -0.1435 24 6 1.8246 -3.6481 0.0858 25 1 -0.4850 0.8400 0.0004 26 1 -0.1480 -1.4120 -1.5715 27 1 -1.2791 -3.4927 -2.2172 28 1 -0.4410 -5.6607 -1.4143 29 1 2.4176 -6.0896 0.7437 30 1 0.9706 -7.3724 -1.3149 31 1 -0.0824 -7.2431 0.1143 32 1 0.6214 -8.7256 2.3089 33 1 3.4389 -12.6147 3.5195 34 1 2.6910 -3.6939 0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313407047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = -21.182989 kcal Electronic energy + Delta-G solvation = -20846.265170 eV Core-core repulsion = 17325.554597 eV Total energy + Delta-G solvation = -3520.710572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.40135 -41.29294 -39.64063 -37.42396 -37.06286 -35.41053 -35.06833 -33.27780 -31.63390 -29.82008 -27.15481 -27.07402 -26.55651 -24.09821 -22.75339 -22.19575 -21.71284 -19.36827 -19.18729 -18.93584 -18.80008 -17.72474 -17.28935 -16.81391 -16.77466 -16.31357 -15.93039 -15.47701 -15.07981 -14.67359 -14.59010 -14.44634 -13.95046 -13.71051 -13.42109 -12.97841 -12.90253 -12.78588 -12.73430 -12.41827 -12.28532 -12.08387 -11.85966 -11.69772 -11.17313 -11.04910 -10.83853 -10.49074 -9.28878 -8.58235 -7.96330 -6.28922 -0.34945 0.28487 1.08774 1.37339 1.40616 1.41625 1.53367 1.58672 1.62011 1.74462 2.24679 2.75338 2.83495 2.87020 3.47716 3.65412 3.89416 3.96783 4.22939 4.54053 4.56967 4.62833 4.70659 4.80850 5.19589 5.20873 5.21590 5.24072 5.44519 5.59223 5.93585 6.05514 6.24607 6.34522 6.58038 6.63191 6.79312 6.91480 6.96457 7.06356 7.23972 8.39812 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.002750 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.772237 B =10180.636540 C =10571.148392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.504 4.504 8 H 0.070 0.930 9 C 0.111 3.889 10 C -0.232 4.232 11 C -0.075 4.075 12 C -0.296 4.296 13 C 0.236 3.764 14 N -0.753 5.753 15 C 0.215 3.785 16 C -0.024 4.024 17 C -0.155 4.155 18 C -0.035 4.035 19 C 0.580 3.420 20 O -0.515 6.515 21 O -0.495 6.495 22 N -0.318 5.318 23 O 0.140 5.860 24 C -0.308 4.308 25 H 0.286 0.714 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.397 0.603 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.203 0.797 33 H 0.443 0.557 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -17.296 1.955 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.088 0.912 9 C 0.108 3.892 10 C -0.252 4.252 11 C -0.094 4.094 12 C -0.319 4.319 13 C 0.136 3.864 14 N -0.388 5.388 15 C 0.091 3.909 16 C -0.087 4.087 17 C -0.177 4.177 18 C -0.190 4.190 19 C 0.421 3.579 20 O -0.402 6.402 21 O -0.310 6.310 22 N -0.014 5.014 23 O 0.057 5.943 24 C -0.332 4.332 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.145 0.855 29 H 0.231 0.769 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.220 0.780 33 H 0.307 0.693 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.457 -17.871 1.459 18.098 hybrid contribution 0.113 0.800 1.322 1.549 sum 2.569 -17.071 2.781 17.486 Atomic orbital electron populations 1.69908 1.08894 1.30278 1.35814 1.26706 0.95466 1.04319 0.91322 0.85260 0.79060 0.76242 0.79450 1.18734 1.19279 1.18448 1.19802 0.98200 0.92750 1.42602 0.91190 1.17686 0.91157 0.92372 0.88018 1.21142 1.01687 0.97168 1.05233 1.20761 0.97949 0.92641 0.98055 1.20246 1.02775 0.97424 1.11433 1.17369 0.92533 0.84194 0.92267 1.44350 1.34983 1.01781 1.57691 1.19728 0.94717 0.76217 1.00274 1.24551 0.91858 0.97919 0.94340 1.22731 1.02111 0.94544 0.98341 1.22483 1.00307 1.00984 0.95266 1.19023 0.77102 0.78541 0.83200 1.90942 1.44300 1.72197 1.32786 1.84558 1.53469 1.41490 1.51434 1.74373 1.18533 1.05701 1.02790 1.84860 1.39966 1.30646 1.38784 1.20512 1.07235 0.92090 1.13374 0.90328 0.88810 0.87147 0.85529 0.76908 0.88636 0.87107 0.77975 0.69304 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.57 10.96 21.82 0.24 -43.33 16 2 C 0.04 1.88 5.14 85.25 0.44 2.32 16 3 Si 0.98 38.77 29.60 68.60 2.03 40.80 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.62 9.05 23.46 0.21 -27.41 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 9 C 0.11 6.00 5.57 -21.31 -0.12 5.88 16 10 C -0.23 -12.17 8.69 22.75 0.20 -11.97 16 11 C -0.08 -3.34 10.01 22.20 0.22 -3.12 16 12 C -0.30 -11.56 9.32 22.59 0.21 -11.35 16 13 C 0.24 9.42 6.64 38.16 0.25 9.68 16 14 N -0.75 -22.04 5.72 -343.29 -1.96 -24.00 16 15 C 0.22 4.43 5.46 85.63 0.47 4.90 16 16 C -0.02 -0.46 6.84 25.01 0.17 -0.29 16 17 C -0.15 -2.99 10.92 22.60 0.25 -2.74 16 18 C -0.03 -0.76 7.24 42.94 0.31 -0.45 16 19 C 0.58 11.86 8.36 70.48 0.59 12.45 16 20 O -0.51 -12.51 17.74 20.13 0.36 -12.16 16 21 O -0.50 -7.27 13.44 -55.53 -0.75 -8.01 16 22 N -0.32 -7.50 12.12 -49.52 -0.60 -8.10 16 23 O 0.14 3.08 11.18 71.92 0.80 3.88 16 24 C -0.31 -14.79 9.63 22.86 0.22 -14.57 16 25 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 26 H 0.09 5.22 6.15 -2.91 -0.02 5.20 16 27 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.13 3.91 6.70 -2.92 -0.02 3.89 16 29 H 0.40 11.09 8.47 -92.71 -0.79 10.31 16 30 H 0.10 1.80 7.93 -2.39 -0.02 1.78 16 31 H 0.11 1.98 7.95 -2.39 -0.02 1.96 16 32 H 0.20 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.44 1.57 9.11 -74.06 -0.67 0.90 16 34 H 0.09 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -66.76 311.65 3.26 -63.50 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.28 Total: 24.12 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 3.42 Total: -36.70 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -2.33 Total: -75.43 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.41 Total: -16.29 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -66.76 3.26 -63.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313407047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.314 kcal (2) G-P(sol) polarization free energy of solvation -66.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds