Wall clock time and date at job start Tue Mar 31 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86795 * 120.00231 * 2 1 4 4 H 1.48503 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47011 * 300.00174 * 3 2 1 6 6 H 1.48497 * 109.47244 * 60.00250 * 3 2 1 7 7 C 1.39930 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 167.84769 * 7 2 1 9 9 C 1.41413 * 120.00150 * 347.84517 * 7 2 1 10 10 C 1.40789 * 120.20363 * 151.88427 * 9 7 2 11 11 C 1.37653 * 119.89871 * 180.30066 * 10 9 7 12 12 C 1.38517 * 120.32829 * 359.97438 * 11 10 9 13 13 C 1.39322 * 120.41614 * 0.02562 * 12 11 10 14 14 N 1.39688 * 119.95103 * 179.97438 * 13 12 11 15 15 C 1.40080 * 119.99867 * 6.02992 * 14 13 12 16 16 C 1.38855 * 120.00166 * 252.79267 * 15 14 13 17 17 C 1.38094 * 120.00876 * 179.77153 * 16 15 14 18 18 C 1.38889 * 120.02056 * 0.50571 * 17 16 15 19 19 N 1.39963 * 119.99668 * 179.72545 * 18 17 16 20 20 C 1.38854 * 120.00580 * 359.75142 * 18 17 16 21 21 C 1.38179 * 119.99291 * 359.97438 * 20 18 17 22 22 Cl 1.73602 * 120.01046 * 179.97438 * 21 20 18 23 23 C 1.38347 * 120.09785 * 0.02562 * 13 12 11 24 24 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.05524 * 0.27226 * 10 9 7 26 26 H 1.07997 * 119.83850 * 179.97438 * 11 10 9 27 27 H 1.07993 * 119.79332 * 179.97438 * 12 11 10 28 28 H 0.96999 * 120.00335 * 186.02754 * 14 13 12 29 29 H 1.07998 * 120.00037 * 0.02562 * 16 15 14 30 30 H 1.07992 * 119.99037 * 180.23307 * 17 16 15 31 31 H 0.96993 * 120.00019 * 180.02562 * 19 18 17 32 32 H 0.96996 * 119.99822 * 0.02590 * 19 18 17 33 33 H 1.08004 * 120.00110 * 180.02562 * 20 18 17 34 34 H 1.07995 * 120.16921 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0697 -1.2223 -0.1974 9 6 1.3245 -2.4229 0.2568 10 6 1.7967 -3.6322 -0.2882 11 6 1.1231 -4.8064 -0.0387 12 6 -0.0178 -4.8051 0.7468 13 6 -0.4968 -3.6162 1.2928 14 7 -1.6486 -3.6259 2.0831 15 6 -2.2490 -4.8427 2.4309 16 6 -3.4469 -5.2202 1.8387 17 6 -4.0366 -6.4219 2.1780 18 6 -3.4373 -7.2487 3.1194 19 7 -4.0383 -8.4639 3.4671 20 6 -2.2421 -6.8696 3.7160 21 6 -1.6488 -5.6698 3.3727 22 17 -0.1550 -5.1950 4.1188 23 6 0.1659 -2.4258 1.0525 24 1 -0.4850 0.8401 -0.0004 25 1 2.6857 -3.6385 -0.9013 26 1 1.4859 -5.7334 -0.4576 27 1 -0.5397 -5.7312 0.9366 28 1 -2.0325 -2.7901 2.3912 29 1 -3.9154 -4.5757 1.1096 30 1 -4.9663 -6.7169 1.7144 31 1 -3.6200 -9.0412 4.1247 32 1 -4.8732 -8.7288 3.0503 33 1 -1.7759 -7.5128 4.4477 34 1 -0.2046 -1.5035 1.4748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313431625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:43 Heat of formation + Delta-G solvation = 41.000570 kcal Electronic energy + Delta-G solvation = -19509.099011 eV Core-core repulsion = 16431.794085 eV Total energy + Delta-G solvation = -3077.304926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.55446 -37.60695 -36.14554 -35.32004 -33.53846 -32.68624 -30.58423 -29.35248 -28.73260 -26.22432 -25.09068 -22.75556 -21.85022 -20.90909 -19.91759 -17.51888 -17.12619 -16.95800 -16.30855 -15.63241 -14.69418 -14.52247 -14.45944 -14.24479 -13.55363 -13.39380 -12.98906 -12.71230 -12.28375 -12.16469 -11.79968 -11.68024 -11.40193 -11.06665 -10.96411 -10.62218 -10.47320 -10.36176 -10.14322 -9.59397 -9.41503 -9.28254 -8.87116 -8.61372 -7.44863 -7.19438 -6.63611 -6.17224 -4.25755 1.37675 1.60243 2.54229 2.91496 3.14648 3.20327 3.27793 3.37466 3.78308 3.85175 4.04176 4.30331 4.80935 4.98166 5.16252 5.53969 5.60848 5.87958 5.90319 6.04943 6.24533 6.37725 6.65376 6.66802 6.68164 6.95964 7.18353 7.21504 7.35370 7.46503 7.48263 7.64312 7.90405 8.02791 8.15445 8.24767 8.55730 8.72214 8.89625 9.07440 9.15906 10.36034 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.004236 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.982485 B = 6609.039043 C = 6733.358538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.136 3.864 10 C -0.250 4.250 11 C -0.071 4.071 12 C -0.275 4.275 13 C 0.214 3.786 14 N -0.708 5.708 15 C 0.132 3.868 16 C -0.072 4.072 17 C -0.186 4.186 18 C 0.210 3.790 19 N -0.881 5.881 20 C -0.187 4.187 21 C 0.006 3.994 22 Cl -0.054 7.054 23 C -0.214 4.214 24 H 0.275 0.725 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.400 0.600 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.396 0.604 32 H 0.397 0.603 33 H 0.127 0.873 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 -10.865 7.038 15.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.133 3.867 10 C -0.270 4.270 11 C -0.090 4.090 12 C -0.297 4.297 13 C 0.118 3.882 14 N -0.338 5.338 15 C 0.035 3.965 16 C -0.093 4.093 17 C -0.209 4.209 18 C 0.106 3.894 19 N -0.421 5.421 20 C -0.211 4.211 21 C -0.024 4.024 22 Cl -0.024 7.024 23 C -0.237 4.237 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.236 0.764 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.224 0.776 32 H 0.225 0.775 33 H 0.145 0.855 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.814 -10.746 7.062 15.590 hybrid contribution 0.126 0.700 0.173 0.733 sum -8.688 -10.046 7.235 15.124 Atomic orbital electron populations 1.69843 1.07316 1.28393 1.37308 1.25831 0.94757 1.00908 0.92518 0.86317 0.80926 0.81405 0.78322 1.18595 1.20188 1.19961 1.19559 0.96176 0.90660 1.43171 0.90711 1.17315 0.90493 0.91845 0.87085 1.20908 1.03866 0.93459 1.08774 1.20272 0.95071 0.96187 0.97468 1.19878 1.02881 0.95055 1.11907 1.17586 0.85631 0.94533 0.90476 1.41804 1.29601 1.04000 1.58402 1.17094 0.93678 0.89847 0.95914 1.21200 0.95144 0.95496 0.97493 1.20492 1.02340 0.95972 1.02143 1.17529 0.91601 0.86676 0.93562 1.42407 1.28757 1.20803 1.50127 1.20257 0.97122 0.97728 1.06002 1.21242 0.89607 0.95732 0.95840 1.98381 1.31723 1.91814 1.80524 1.20772 1.00906 0.94959 1.07075 0.91415 0.89409 0.89715 0.89814 0.76434 0.85078 0.85933 0.77581 0.77489 0.85531 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.05 10.85 55.55 0.60 -20.45 16 2 C 0.08 1.95 5.23 -17.34 -0.09 1.86 16 3 Si 0.91 19.24 29.58 -169.99 -5.03 14.21 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.46 -12.70 9.06 -37.74 -0.34 -13.04 16 8 H 0.07 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.71 5.56 -106.85 -0.59 3.12 16 10 C -0.25 -6.39 9.79 -38.83 -0.38 -6.77 16 11 C -0.07 -1.68 10.02 -39.69 -0.40 -2.08 16 12 C -0.27 -6.38 8.90 -39.08 -0.35 -6.73 16 13 C 0.21 4.98 5.88 -83.84 -0.49 4.49 16 14 N -0.71 -13.80 4.96 -8.38 -0.04 -13.84 16 15 C 0.13 2.25 4.65 -83.59 -0.39 1.86 16 16 C -0.07 -1.06 9.96 -39.41 -0.39 -1.45 16 17 C -0.19 -2.28 9.89 -39.39 -0.39 -2.67 16 18 C 0.21 2.48 6.76 -83.68 -0.57 1.92 16 19 N -0.88 -7.03 9.10 32.45 0.30 -6.73 16 20 C -0.19 -2.52 9.67 -39.38 -0.38 -2.91 16 21 C 0.01 0.09 5.66 -39.33 -0.22 -0.13 16 22 Cl -0.05 -0.93 27.56 -51.86 -1.43 -2.36 16 23 C -0.21 -5.59 8.50 -38.67 -0.33 -5.92 16 24 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 25 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 26 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 27 H 0.08 1.87 6.66 -52.49 -0.35 1.52 16 28 H 0.40 7.36 8.84 -40.82 -0.36 7.00 16 29 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.40 2.51 8.84 -40.82 -0.36 2.15 16 32 H 0.40 2.38 8.84 -40.82 -0.36 2.02 16 33 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.12 3.21 6.21 -52.49 -0.33 2.89 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -29.47 308.74 -9.68 -39.15 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -3.42 Total: 13.83 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -5.31 Total: -28.46 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.86 Total: -41.02 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.43 Total: -2.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.47 -9.68 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.149 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds