Wall clock time and date at job start Tue Mar 31 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86795 * 120.00231 * 2 1 4 4 H 1.48503 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47011 * 300.00174 * 3 2 1 6 6 H 1.48497 * 109.47244 * 60.00250 * 3 2 1 7 7 C 1.39930 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 167.84769 * 7 2 1 9 9 C 1.41413 * 120.00150 * 347.84517 * 7 2 1 10 10 C 1.40789 * 120.20363 * 151.88427 * 9 7 2 11 11 C 1.37653 * 119.89871 * 180.30066 * 10 9 7 12 12 C 1.38517 * 120.32829 * 359.97438 * 11 10 9 13 13 C 1.39322 * 120.41614 * 0.02562 * 12 11 10 14 14 N 1.39688 * 119.95103 * 179.97438 * 13 12 11 15 15 C 1.40080 * 119.99867 * 6.02992 * 14 13 12 16 16 C 1.38855 * 120.00166 * 252.79267 * 15 14 13 17 17 C 1.38094 * 120.00876 * 179.77153 * 16 15 14 18 18 C 1.38889 * 120.02056 * 0.50571 * 17 16 15 19 19 N 1.39963 * 119.99668 * 179.72545 * 18 17 16 20 20 C 1.38854 * 120.00580 * 359.75142 * 18 17 16 21 21 C 1.38179 * 119.99291 * 359.97438 * 20 18 17 22 22 Cl 1.73602 * 120.01046 * 179.97438 * 21 20 18 23 23 C 1.38347 * 120.09785 * 0.02562 * 13 12 11 24 24 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.05524 * 0.27226 * 10 9 7 26 26 H 1.07997 * 119.83850 * 179.97438 * 11 10 9 27 27 H 1.07993 * 119.79332 * 179.97438 * 12 11 10 28 28 H 0.96999 * 120.00335 * 186.02754 * 14 13 12 29 29 H 1.07998 * 120.00037 * 0.02562 * 16 15 14 30 30 H 1.07992 * 119.99037 * 180.23307 * 17 16 15 31 31 H 0.96993 * 120.00019 * 180.02562 * 19 18 17 32 32 H 0.96996 * 119.99822 * 0.02590 * 19 18 17 33 33 H 1.08004 * 120.00110 * 180.02562 * 20 18 17 34 34 H 1.07995 * 120.16921 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0697 -1.2223 -0.1974 9 6 1.3245 -2.4229 0.2568 10 6 1.7967 -3.6322 -0.2882 11 6 1.1231 -4.8064 -0.0387 12 6 -0.0178 -4.8051 0.7468 13 6 -0.4968 -3.6162 1.2928 14 7 -1.6486 -3.6259 2.0831 15 6 -2.2490 -4.8427 2.4309 16 6 -3.4469 -5.2202 1.8387 17 6 -4.0366 -6.4219 2.1780 18 6 -3.4373 -7.2487 3.1194 19 7 -4.0383 -8.4639 3.4671 20 6 -2.2421 -6.8696 3.7160 21 6 -1.6488 -5.6698 3.3727 22 17 -0.1550 -5.1950 4.1188 23 6 0.1659 -2.4258 1.0525 24 1 -0.4850 0.8401 -0.0004 25 1 2.6857 -3.6385 -0.9013 26 1 1.4859 -5.7334 -0.4576 27 1 -0.5397 -5.7312 0.9366 28 1 -2.0325 -2.7901 2.3912 29 1 -3.9154 -4.5757 1.1096 30 1 -4.9663 -6.7169 1.7144 31 1 -3.6200 -9.0412 4.1247 32 1 -4.8732 -8.7288 3.0503 33 1 -1.7759 -7.5128 4.4477 34 1 -0.2046 -1.5035 1.4748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313431625.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:43 Heat of formation + Delta-G solvation = 24.049604 kcal Electronic energy + Delta-G solvation = -19509.834060 eV Core-core repulsion = 16431.794085 eV Total energy + Delta-G solvation = -3078.039975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76096 -39.28928 -37.40332 -36.75504 -35.26684 -34.03769 -31.67318 -31.29532 -30.25153 -27.59163 -27.04800 -23.84985 -23.16671 -22.74602 -21.61322 -19.22563 -18.29914 -17.93130 -17.71213 -17.33639 -16.43740 -16.28941 -15.58838 -15.38177 -14.85471 -14.72615 -14.51965 -14.27560 -14.01251 -13.64968 -13.46251 -13.04037 -12.81633 -12.73774 -12.61552 -12.30899 -12.09438 -11.78563 -11.60270 -11.32323 -11.23578 -11.04139 -10.62702 -9.73544 -9.16780 -8.58785 -8.45336 -7.88670 -6.29565 0.28333 0.47736 1.11398 1.31774 1.36375 1.40250 1.54615 1.58831 2.26120 2.69243 2.83032 2.88863 3.07286 3.87370 3.95248 4.21402 4.43350 4.51118 4.57957 4.80690 4.86812 4.95345 5.07445 5.23586 5.24756 5.34963 5.48363 5.51978 5.60729 5.70965 6.01380 6.15038 6.25207 6.31017 6.54705 6.63686 6.95384 7.04407 7.08789 7.13862 7.24077 8.45522 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027499 B = 0.004236 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.982485 B = 6609.039043 C = 6733.358538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.069 0.931 9 C 0.107 3.893 10 C -0.276 4.276 11 C -0.069 4.069 12 C -0.274 4.274 13 C 0.229 3.771 14 N -0.701 5.701 15 C 0.091 3.909 16 C -0.074 4.074 17 C -0.181 4.181 18 C 0.226 3.774 19 N -0.861 5.861 20 C -0.193 4.193 21 C -0.006 4.006 22 Cl -0.076 7.076 23 C -0.241 4.241 24 H 0.283 0.717 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.400 0.600 29 H 0.134 0.866 30 H 0.155 0.845 31 H 0.408 0.592 32 H 0.411 0.589 33 H 0.144 0.856 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 -12.573 7.440 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.087 0.913 9 C 0.104 3.896 10 C -0.296 4.296 11 C -0.088 4.088 12 C -0.297 4.297 13 C 0.130 3.870 14 N -0.330 5.330 15 C -0.005 4.005 16 C -0.095 4.095 17 C -0.204 4.204 18 C 0.119 3.881 19 N -0.401 5.401 20 C -0.217 4.217 21 C -0.035 4.035 22 Cl -0.047 7.047 23 C -0.264 4.264 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.236 0.764 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.238 0.762 32 H 0.242 0.758 33 H 0.162 0.838 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.556 -12.527 7.493 18.014 hybrid contribution 0.444 0.991 0.116 1.092 sum -10.113 -11.537 7.610 17.125 Atomic orbital electron populations 1.69906 1.08638 1.29742 1.37297 1.26648 0.95599 1.04038 0.91507 0.85203 0.79290 0.76632 0.78784 1.18521 1.19121 1.19043 1.19793 0.96215 0.92026 1.45391 0.91269 1.17683 0.91378 0.92729 0.87771 1.21037 1.04749 0.93887 1.09975 1.20597 0.94705 0.96659 0.96791 1.20038 1.02740 0.95430 1.11442 1.17599 0.86065 0.93616 0.89688 1.41721 1.28417 1.05448 1.57416 1.17313 0.95343 0.89617 0.98225 1.21274 0.94238 0.96561 0.97402 1.20790 1.03125 0.94749 1.01722 1.17599 0.90683 0.87492 0.92288 1.42408 1.28875 1.19250 1.49604 1.20437 0.97754 0.96976 1.06500 1.21338 0.89112 0.96764 0.96328 1.98370 1.33239 1.92144 1.80936 1.20669 1.01828 0.95416 1.08533 0.90648 0.89198 0.86820 0.88424 0.76409 0.84786 0.82702 0.76220 0.75805 0.83829 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.80 10.85 21.82 0.24 -44.56 16 2 C 0.04 1.87 5.23 85.25 0.45 2.32 16 3 Si 0.98 40.17 29.58 68.60 2.03 42.20 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.50 -28.71 9.06 23.46 0.21 -28.49 16 8 H 0.07 3.85 7.87 -2.91 -0.02 3.82 16 9 C 0.11 6.13 5.56 -21.31 -0.12 6.01 16 10 C -0.28 -14.55 9.79 22.76 0.22 -14.33 16 11 C -0.07 -3.25 10.02 22.20 0.22 -3.03 16 12 C -0.27 -12.68 8.90 22.60 0.20 -12.48 16 13 C 0.23 10.88 5.88 38.18 0.22 11.11 16 14 N -0.70 -27.74 4.96 -180.41 -0.90 -28.64 16 15 C 0.09 3.04 4.65 38.14 0.18 3.21 16 16 C -0.07 -2.03 9.96 22.38 0.22 -1.81 16 17 C -0.18 -3.76 9.89 22.39 0.22 -3.54 16 18 C 0.23 4.48 6.76 38.15 0.26 4.73 16 19 N -0.86 -9.73 9.10 -51.24 -0.47 -10.20 16 20 C -0.19 -4.70 9.67 22.40 0.22 -4.48 16 21 C -0.01 -0.19 5.66 22.43 0.13 -0.06 16 22 Cl -0.08 -2.65 27.56 -2.72 -0.07 -2.73 16 23 C -0.24 -13.12 8.50 22.86 0.19 -12.92 16 24 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 25 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 27 H 0.10 4.23 6.66 -2.91 -0.02 4.21 16 28 H 0.40 15.26 8.84 -92.71 -0.82 14.44 16 29 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 31 H 0.41 3.30 8.84 -92.71 -0.82 2.48 16 32 H 0.41 2.83 8.84 -92.71 -0.82 2.01 16 33 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.10 5.80 6.21 -2.91 -0.02 5.78 16 Total: -1.00 -65.86 308.74 2.37 -63.49 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -1.28 Total: 34.20 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 2.83 Total: -53.76 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.12 Total: -83.40 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.07 Total: -2.73 kcal Total: -65.86 2.37 -63.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431625.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.535 kcal (2) G-P(sol) polarization free energy of solvation -65.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds