Wall clock time and date at job start Tue Mar 31 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86797 * 119.99711 * 2 1 4 4 H 1.48505 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47398 * 299.99933 * 3 2 1 6 6 H 1.48504 * 109.46924 * 60.00744 * 3 2 1 7 7 C 1.39927 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00049 * 167.58632 * 7 2 1 9 9 C 1.41414 * 120.00153 * 347.59125 * 7 2 1 10 10 C 1.40786 * 120.20824 * 151.82630 * 9 7 2 11 11 C 1.37660 * 119.89860 * 180.29839 * 10 9 7 12 12 C 1.38507 * 120.32680 * 359.97438 * 11 10 9 13 13 C 1.39326 * 120.42377 * 0.02562 * 12 11 10 14 14 N 1.39678 * 119.95306 * 179.97438 * 13 12 11 15 15 C 1.40081 * 120.00150 * 5.97988 * 14 13 12 16 16 C 1.38676 * 120.08748 * 252.38499 * 15 14 13 17 17 C 1.38254 * 120.01110 * 180.02562 * 16 15 14 18 18 C 1.38357 * 120.18170 * 359.97438 * 17 16 15 19 19 Cl 1.73609 * 119.91431 * 179.97438 * 18 17 16 20 20 C 1.38361 * 120.17784 * 0.02562 * 18 17 16 21 21 C 1.38670 * 119.98098 * 359.71650 * 20 18 17 22 22 N 1.39974 * 120.08790 * 180.27826 * 21 20 18 23 23 C 1.38346 * 120.08768 * 0.02562 * 13 12 11 24 24 H 0.96995 * 120.00125 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.05175 * 0.25196 * 10 9 7 26 26 H 1.08003 * 119.83330 * 179.97438 * 11 10 9 27 27 H 1.07998 * 119.78705 * 180.02562 * 12 11 10 28 28 H 0.97000 * 119.99511 * 185.97472 * 14 13 12 29 29 H 1.08002 * 119.99184 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.90244 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.00622 * 180.02562 * 20 18 17 32 32 H 0.97000 * 119.99883 * 180.28142 * 22 21 20 33 33 H 0.97005 * 120.00115 * 0.27532 * 22 21 20 34 34 H 1.08002 * 120.15823 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0081 -1.2118 -0.0005 8 1 3.0691 -1.2226 -0.2016 9 6 1.3258 -2.4223 0.2621 10 6 1.7952 -3.6326 -0.2829 11 6 1.1226 -4.8064 -0.0282 12 6 -0.0145 -4.8034 0.7627 13 6 -0.4908 -3.6135 1.3089 14 7 -1.6388 -3.6217 2.1047 15 6 -2.2383 -4.8378 2.4566 16 6 -3.4419 -5.2125 1.8786 17 6 -4.0326 -6.4128 2.2275 18 6 -3.4258 -7.2437 3.1526 19 17 -4.1739 -8.7491 3.5862 20 6 -2.2249 -6.8775 3.7341 21 6 -1.6236 -5.6776 3.3853 22 7 -0.4058 -5.3076 3.9678 23 6 0.1710 -2.4237 1.0633 24 1 -0.4850 0.8400 0.0004 25 1 2.6811 -3.6400 -0.9005 26 1 1.4834 -5.7341 -0.4471 27 1 -0.5351 -5.7294 0.9573 28 1 -2.0207 -2.7853 2.4136 29 1 -3.9180 -4.5664 1.1558 30 1 -4.9701 -6.7027 1.7766 31 1 -1.7535 -7.5283 4.4556 32 1 0.0117 -4.4661 3.7260 33 1 0.0207 -5.8927 4.6134 34 1 -0.1971 -1.5007 1.4864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313434336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:09 Heat of formation + Delta-G solvation = 37.926519 kcal Electronic energy + Delta-G solvation = -19503.616943 eV Core-core repulsion = 16426.178716 eV Total energy + Delta-G solvation = -3077.438227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70720 -37.61477 -36.49291 -34.63839 -34.07282 -33.25263 -29.96746 -29.48662 -28.66016 -26.71524 -25.22324 -22.54589 -21.84189 -21.03930 -20.01220 -17.61689 -17.08606 -16.72473 -16.36918 -15.71431 -14.79447 -14.71185 -14.44078 -14.23219 -13.63224 -13.45588 -12.94750 -12.82352 -12.31658 -12.26623 -11.78708 -11.74188 -11.58846 -11.22457 -11.07512 -10.86542 -10.70493 -10.45880 -10.26176 -9.75922 -9.54058 -9.43999 -9.03219 -8.48618 -7.35097 -7.34096 -6.75444 -6.33341 -4.38203 1.34362 1.67929 2.21816 2.81142 3.07590 3.11196 3.13038 3.24953 3.85648 3.94943 4.04817 4.22301 4.68197 5.00949 5.29513 5.53532 5.64790 5.73652 5.93356 6.02647 6.25453 6.42240 6.56170 6.59594 6.72167 6.85646 7.05058 7.09373 7.31795 7.32410 7.58777 7.79337 7.90162 7.99418 8.02016 8.11704 8.42684 8.58678 8.75746 8.94527 9.01629 10.24253 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.003618 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.857099 B = 7736.252974 C = 7979.033154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.136 3.864 10 C -0.248 4.248 11 C -0.071 4.071 12 C -0.277 4.277 13 C 0.201 3.799 14 N -0.709 5.709 15 C 0.104 3.896 16 C -0.074 4.074 17 C -0.165 4.165 18 C 0.005 3.995 19 Cl -0.085 7.085 20 C -0.194 4.194 21 C 0.229 3.771 22 N -0.861 5.861 23 C -0.217 4.217 24 H 0.277 0.723 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.399 0.601 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.409 0.591 33 H 0.394 0.606 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 -8.349 7.352 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.133 3.867 10 C -0.268 4.268 11 C -0.089 4.089 12 C -0.300 4.300 13 C 0.105 3.895 14 N -0.340 5.340 15 C 0.006 3.994 16 C -0.095 4.095 17 C -0.187 4.187 18 C -0.023 4.023 19 Cl -0.056 7.056 20 C -0.218 4.218 21 C 0.119 3.881 22 N -0.399 5.399 23 C -0.240 4.240 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.235 0.765 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.240 0.760 33 H 0.222 0.778 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.198 -8.447 7.351 12.799 hybrid contribution 0.421 0.984 0.135 1.079 sum -5.777 -7.463 7.486 12.047 Atomic orbital electron populations 1.69835 1.07352 1.28613 1.36759 1.25855 0.94776 1.01036 0.92423 0.86293 0.80906 0.81235 0.78427 1.18545 1.20099 1.19903 1.19576 0.96319 0.90648 1.42954 0.90601 1.17327 0.90427 0.91881 0.87078 1.20944 1.03987 0.93397 1.08502 1.20314 0.95074 0.96285 0.97271 1.19925 1.03018 0.95189 1.11830 1.17694 0.85951 0.94595 0.91284 1.41819 1.29987 1.04231 1.57969 1.17093 0.94485 0.90087 0.97764 1.21196 0.95490 0.95341 0.97489 1.20596 1.01912 0.95116 1.01029 1.20476 0.94633 0.88029 0.99121 1.98339 1.82100 1.32723 1.92487 1.20186 0.97173 0.97769 1.06715 1.17948 0.87010 0.92427 0.90702 1.42504 1.22360 1.26214 1.48822 1.20802 1.01177 0.94882 1.07177 0.91263 0.89283 0.89597 0.89552 0.76495 0.85117 0.85559 0.85493 0.76044 0.77838 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.21 10.87 55.55 0.60 -19.60 16 2 C 0.08 1.86 5.23 -17.34 -0.09 1.77 16 3 Si 0.91 18.48 29.58 -169.99 -5.03 13.45 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 7 C -0.46 -12.13 9.06 -37.74 -0.34 -12.47 16 8 H 0.08 1.92 7.88 -52.49 -0.41 1.51 16 9 C 0.14 3.53 5.55 -106.85 -0.59 2.94 16 10 C -0.25 -6.04 9.79 -38.83 -0.38 -6.42 16 11 C -0.07 -1.58 10.01 -39.69 -0.40 -1.98 16 12 C -0.28 -6.06 9.13 -39.08 -0.36 -6.42 16 13 C 0.20 4.34 5.57 -83.84 -0.47 3.88 16 14 N -0.71 -12.71 4.86 -8.29 -0.04 -12.75 16 15 C 0.10 1.68 4.70 -83.46 -0.39 1.29 16 16 C -0.07 -1.09 9.96 -39.41 -0.39 -1.48 16 17 C -0.16 -2.20 9.82 -39.53 -0.39 -2.59 16 18 C 0.00 0.06 6.32 -39.49 -0.25 -0.19 16 19 Cl -0.09 -1.01 28.95 -51.86 -1.50 -2.51 16 20 C -0.19 -2.61 9.67 -39.38 -0.38 -2.99 16 21 C 0.23 3.40 6.02 -83.52 -0.50 2.89 16 22 N -0.86 -11.74 9.01 32.54 0.29 -11.44 16 23 C -0.22 -5.31 8.50 -38.67 -0.33 -5.64 16 24 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 25 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 26 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 27 H 0.09 1.84 6.63 -52.49 -0.35 1.49 16 28 H 0.40 6.77 8.84 -40.82 -0.36 6.41 16 29 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.41 6.27 7.34 -40.82 -0.30 5.97 16 33 H 0.39 4.27 8.85 -40.82 -0.36 3.91 16 34 H 0.12 3.03 6.22 -52.49 -0.33 2.70 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -26.63 308.25 -9.65 -36.28 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -3.36 Total: 19.34 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -5.26 Total: -27.41 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.86 Total: -43.79 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.63 -9.65 -36.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.204 kcal (2) G-P(sol) polarization free energy of solvation -26.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds