Wall clock time and date at job start Tue Mar 31 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86797 * 119.99711 * 2 1 4 4 H 1.48505 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47398 * 299.99933 * 3 2 1 6 6 H 1.48504 * 109.46924 * 60.00744 * 3 2 1 7 7 C 1.39927 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00049 * 167.58632 * 7 2 1 9 9 C 1.41414 * 120.00153 * 347.59125 * 7 2 1 10 10 C 1.40786 * 120.20824 * 151.82630 * 9 7 2 11 11 C 1.37660 * 119.89860 * 180.29839 * 10 9 7 12 12 C 1.38507 * 120.32680 * 359.97438 * 11 10 9 13 13 C 1.39326 * 120.42377 * 0.02562 * 12 11 10 14 14 N 1.39678 * 119.95306 * 179.97438 * 13 12 11 15 15 C 1.40081 * 120.00150 * 5.97988 * 14 13 12 16 16 C 1.38676 * 120.08748 * 252.38499 * 15 14 13 17 17 C 1.38254 * 120.01110 * 180.02562 * 16 15 14 18 18 C 1.38357 * 120.18170 * 359.97438 * 17 16 15 19 19 Cl 1.73609 * 119.91431 * 179.97438 * 18 17 16 20 20 C 1.38361 * 120.17784 * 0.02562 * 18 17 16 21 21 C 1.38670 * 119.98098 * 359.71650 * 20 18 17 22 22 N 1.39974 * 120.08790 * 180.27826 * 21 20 18 23 23 C 1.38346 * 120.08768 * 0.02562 * 13 12 11 24 24 H 0.96995 * 120.00125 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.05175 * 0.25196 * 10 9 7 26 26 H 1.08003 * 119.83330 * 179.97438 * 11 10 9 27 27 H 1.07998 * 119.78705 * 180.02562 * 12 11 10 28 28 H 0.97000 * 119.99511 * 185.97472 * 14 13 12 29 29 H 1.08002 * 119.99184 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.90244 * 179.97438 * 17 16 15 31 31 H 1.07997 * 120.00622 * 180.02562 * 20 18 17 32 32 H 0.97000 * 119.99883 * 180.28142 * 22 21 20 33 33 H 0.97005 * 120.00115 * 0.27532 * 22 21 20 34 34 H 1.08002 * 120.15823 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0081 -1.2118 -0.0005 8 1 3.0691 -1.2226 -0.2016 9 6 1.3258 -2.4223 0.2621 10 6 1.7952 -3.6326 -0.2829 11 6 1.1226 -4.8064 -0.0282 12 6 -0.0145 -4.8034 0.7627 13 6 -0.4908 -3.6135 1.3089 14 7 -1.6388 -3.6217 2.1047 15 6 -2.2383 -4.8378 2.4566 16 6 -3.4419 -5.2125 1.8786 17 6 -4.0326 -6.4128 2.2275 18 6 -3.4258 -7.2437 3.1526 19 17 -4.1739 -8.7491 3.5862 20 6 -2.2249 -6.8775 3.7341 21 6 -1.6236 -5.6776 3.3853 22 7 -0.4058 -5.3076 3.9678 23 6 0.1710 -2.4237 1.0633 24 1 -0.4850 0.8400 0.0004 25 1 2.6811 -3.6400 -0.9005 26 1 1.4834 -5.7341 -0.4471 27 1 -0.5351 -5.7294 0.9573 28 1 -2.0207 -2.7853 2.4136 29 1 -3.9180 -4.5664 1.1558 30 1 -4.9701 -6.7027 1.7766 31 1 -1.7535 -7.5283 4.4556 32 1 0.0117 -4.4661 3.7260 33 1 0.0207 -5.8927 4.6134 34 1 -0.1971 -1.5007 1.4864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313434336.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:09 Heat of formation + Delta-G solvation = 24.327843 kcal Electronic energy + Delta-G solvation = -19504.206626 eV Core-core repulsion = 16426.178716 eV Total energy + Delta-G solvation = -3078.027910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95162 -39.23418 -37.58447 -36.15456 -35.20462 -34.99136 -31.35288 -31.29461 -29.91372 -28.14263 -27.09443 -23.74429 -23.10007 -22.80841 -21.63176 -19.26120 -18.32242 -17.91822 -17.80290 -17.29089 -16.45693 -16.33566 -15.75294 -15.35729 -14.87396 -14.75702 -14.56329 -14.32741 -14.05450 -13.72364 -13.20285 -13.00943 -12.89854 -12.75936 -12.64320 -12.48476 -12.10277 -11.85357 -11.61285 -11.34232 -11.32607 -11.15373 -10.73203 -9.63888 -9.21410 -8.60870 -8.48619 -7.97191 -6.32641 0.20222 0.58045 1.07701 1.18242 1.29249 1.40701 1.54354 1.56180 2.24687 2.64099 2.77405 2.85970 3.05630 3.82323 3.93820 4.28085 4.43006 4.46259 4.55469 4.77683 4.85757 4.90393 5.03011 5.21754 5.29110 5.35057 5.41610 5.48151 5.57131 5.69952 5.96747 6.10541 6.21159 6.26027 6.49189 6.61349 6.90571 6.94082 7.05364 7.10152 7.19418 8.42080 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.003618 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.857099 B = 7736.252974 C = 7979.033154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.070 0.930 9 C 0.109 3.891 10 C -0.273 4.273 11 C -0.068 4.068 12 C -0.275 4.275 13 C 0.218 3.782 14 N -0.699 5.699 15 C 0.072 3.928 16 C -0.076 4.076 17 C -0.164 4.164 18 C 0.005 3.995 19 Cl -0.068 7.068 20 C -0.191 4.191 21 C 0.223 3.777 22 N -0.859 5.859 23 C -0.238 4.238 24 H 0.284 0.716 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.401 0.599 29 H 0.134 0.866 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.400 0.600 33 H 0.407 0.593 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 -9.445 8.044 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.088 0.912 9 C 0.106 3.894 10 C -0.293 4.293 11 C -0.087 4.087 12 C -0.297 4.297 13 C 0.120 3.880 14 N -0.329 5.329 15 C -0.026 4.026 16 C -0.097 4.097 17 C -0.185 4.185 18 C -0.023 4.023 19 Cl -0.039 7.039 20 C -0.216 4.216 21 C 0.113 3.887 22 N -0.396 5.396 23 C -0.262 4.262 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.238 0.762 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.229 0.771 33 H 0.237 0.763 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.052 -9.588 8.075 14.383 hybrid contribution 0.540 1.129 -0.015 1.251 sum -6.513 -8.459 8.060 13.377 Atomic orbital electron populations 1.69892 1.08604 1.29856 1.37046 1.26632 0.95569 1.04022 0.91495 0.85209 0.79325 0.76685 0.78749 1.18492 1.19423 1.18950 1.19801 0.96353 0.91986 1.45075 0.91188 1.17674 0.91351 0.92620 0.87779 1.21057 1.04801 0.93838 1.09624 1.20605 0.94764 0.96663 0.96680 1.20057 1.02783 0.95529 1.11353 1.17654 0.86306 0.93592 0.90442 1.41702 1.28766 1.05443 1.56944 1.17299 0.95630 0.89974 0.99658 1.21275 0.94987 0.95974 0.97451 1.20796 1.02502 0.94388 1.00803 1.20634 0.94506 0.88574 0.98566 1.98351 1.81752 1.31517 1.92292 1.20389 0.97127 0.97346 1.06706 1.18025 0.87291 0.92702 0.90686 1.42491 1.22120 1.26042 1.48994 1.20688 1.01846 0.95362 1.08343 0.90582 0.89231 0.86984 0.88411 0.76232 0.84817 0.83544 0.83568 0.77089 0.76312 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.76 10.87 21.82 0.24 -42.53 16 2 C 0.04 1.84 5.23 85.25 0.45 2.29 16 3 Si 0.98 38.34 29.58 68.60 2.03 40.37 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 7 C -0.50 -27.14 9.06 23.46 0.21 -26.93 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 C 0.11 5.83 5.55 -21.31 -0.12 5.71 16 10 C -0.27 -13.55 9.79 22.76 0.22 -13.32 16 11 C -0.07 -3.03 10.01 22.20 0.22 -2.81 16 12 C -0.27 -11.78 9.13 22.60 0.21 -11.58 16 13 C 0.22 9.48 5.57 38.18 0.21 9.69 16 14 N -0.70 -24.89 4.86 -180.16 -0.88 -25.76 16 15 C 0.07 2.24 4.70 38.23 0.18 2.42 16 16 C -0.08 -2.11 9.96 22.38 0.22 -1.89 16 17 C -0.16 -3.94 9.82 22.30 0.22 -3.72 16 18 C 0.00 0.11 6.32 22.33 0.14 0.25 16 19 Cl -0.07 -1.41 28.95 -2.72 -0.08 -1.48 16 20 C -0.19 -4.65 9.67 22.40 0.22 -4.43 16 21 C 0.22 6.22 6.02 38.24 0.23 6.45 16 22 N -0.86 -22.29 9.01 -50.98 -0.46 -22.75 16 23 C -0.24 -12.02 8.50 22.86 0.19 -11.83 16 24 H 0.28 13.30 8.30 -92.71 -0.77 12.53 16 25 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 26 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.10 3.98 6.63 -2.91 -0.02 3.96 16 28 H 0.40 13.75 8.84 -92.71 -0.82 12.93 16 29 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.40 12.07 7.34 -92.71 -0.68 11.39 16 33 H 0.41 8.14 8.85 -92.70 -0.82 7.32 16 34 H 0.10 5.50 6.22 -2.91 -0.02 5.48 16 Total: -1.00 -57.28 308.25 2.51 -54.77 By element: Atomic # 1 Polarization: 48.23 SS G_CDS: -1.15 Total: 47.09 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 2.81 Total: -49.69 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -1.10 Total: -91.04 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.48 kcal Total: -57.28 2.51 -54.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434336.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.093 kcal (2) G-P(sol) polarization free energy of solvation -57.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds