Wall clock time and date at job start Tue Mar 31 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86808 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46975 * 299.99982 * 3 2 1 6 6 H 1.48502 * 109.46896 * 59.99712 * 3 2 1 7 7 C 1.39921 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00115 * 178.35712 * 7 2 1 9 9 C 1.41412 * 119.99892 * 358.35982 * 7 2 1 10 10 C 1.40789 * 120.20719 * 33.63457 * 9 7 2 11 11 C 1.37651 * 119.90117 * 179.97438 * 10 9 7 12 12 C 1.38523 * 120.32535 * 359.72121 * 11 10 9 13 13 C 1.39319 * 120.41917 * 0.55183 * 12 11 10 14 14 N 1.39681 * 119.95376 * 179.71741 * 13 12 11 15 15 C 1.40018 * 120.00140 * 318.38236 * 14 13 12 16 16 C 1.38725 * 120.09177 * 352.47813 * 15 14 13 17 17 C 1.38242 * 120.01512 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.20154 * 0.04356 * 17 16 15 19 19 C 1.38350 * 120.19025 * 359.95584 * 18 17 16 20 20 Cl 1.73600 * 120.01159 * 180.29497 * 19 18 17 21 21 C 1.38761 * 119.97606 * 0.02562 * 19 18 17 22 22 N 1.40063 * 120.10004 * 180.02562 * 21 19 18 23 23 C 1.38350 * 120.09053 * 359.45089 * 13 12 11 24 24 H 0.96996 * 120.00296 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.04984 * 359.95322 * 10 9 7 26 26 H 1.07999 * 119.84040 * 180.02562 * 11 10 9 27 27 H 1.07992 * 119.78645 * 180.29730 * 12 11 10 28 28 H 0.97004 * 119.99839 * 138.37770 * 14 13 12 29 29 H 1.07998 * 119.99524 * 359.97438 * 16 15 14 30 30 H 1.08004 * 119.89492 * 180.02562 * 17 16 15 31 31 H 1.08007 * 119.90600 * 179.97438 * 18 17 16 32 32 H 0.97004 * 119.99971 * 359.97438 * 22 21 19 33 33 H 0.97000 * 120.00356 * 180.02562 * 22 21 19 34 34 H 1.08003 * 120.16102 * 180.24749 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3466 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0877 -1.2119 -0.0263 9 6 1.3014 -2.4361 0.0361 10 6 0.0536 -2.5528 -0.6054 11 6 -0.6285 -3.7478 -0.5672 12 6 -0.0907 -4.8393 0.0949 13 6 1.1404 -4.7372 0.7391 14 7 1.6708 -5.8423 1.4088 15 6 0.8379 -6.6555 2.1868 16 6 -0.4772 -6.2815 2.4217 17 6 -1.2983 -7.0858 3.1897 18 6 -0.8130 -8.2639 3.7267 19 6 0.4971 -8.6451 3.4978 20 17 1.0994 -10.1290 4.1679 21 6 1.3279 -7.8437 2.7278 22 7 2.6545 -8.2274 2.4939 23 6 1.8408 -3.5444 0.7117 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3679 -1.7059 -1.1265 26 1 -1.5854 -3.8364 -1.0600 27 1 -0.6311 -5.7740 0.1153 28 1 2.6163 -6.0463 1.3348 29 1 -0.8596 -5.3616 2.0045 30 1 -2.3220 -6.7929 3.3710 31 1 -1.4586 -8.8886 4.3263 32 1 2.9939 -9.0543 2.8708 33 1 3.2341 -7.6659 1.9557 34 1 2.7971 -3.4652 1.2073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313441829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:12 Heat of formation + Delta-G solvation = 43.466126 kcal Electronic energy + Delta-G solvation = -19333.625506 eV Core-core repulsion = 16256.427494 eV Total energy + Delta-G solvation = -3077.198012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80709 -37.77647 -36.37564 -34.94678 -34.34930 -33.04761 -30.11525 -29.42120 -28.62102 -27.07808 -25.35209 -22.50103 -21.96678 -20.70189 -20.32924 -17.76965 -17.63281 -16.93620 -16.05576 -15.37430 -15.05145 -14.70928 -14.37900 -14.06522 -13.84019 -13.79971 -13.26395 -12.91599 -12.32596 -11.92081 -11.79584 -11.67396 -11.32806 -11.21425 -11.09964 -10.94728 -10.81251 -10.57773 -10.40663 -10.03764 -9.83640 -9.50580 -9.21220 -8.04096 -7.55953 -7.37969 -6.71245 -6.35917 -4.46999 1.53350 1.76294 2.26837 2.72384 2.92305 3.06385 3.10639 3.15779 3.72574 3.92527 4.03573 4.06507 4.64254 5.16568 5.23631 5.56036 5.65884 5.73114 5.85538 6.19386 6.28473 6.34767 6.44013 6.76750 6.83289 6.90547 6.98671 7.04252 7.18527 7.23877 7.38640 7.64176 7.74161 7.75744 7.97226 8.08507 8.23493 8.31683 8.60888 8.86748 8.90490 10.23680 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033156 B = 0.003465 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.300621 B = 8079.373891 C = 8432.374027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.123 3.877 10 C -0.162 4.162 11 C -0.094 4.094 12 C -0.253 4.253 13 C 0.168 3.832 14 N -0.683 5.683 15 C 0.163 3.837 16 C -0.141 4.141 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.077 4.077 20 Cl -0.087 7.087 21 C 0.156 3.844 22 N -0.880 5.880 23 C -0.238 4.238 24 H 0.278 0.722 25 H 0.128 0.872 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.394 0.606 29 H 0.148 0.852 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.398 0.602 33 H 0.394 0.606 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -11.923 4.648 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.120 3.880 10 C -0.182 4.182 11 C -0.114 4.114 12 C -0.274 4.274 13 C 0.075 3.925 14 N -0.306 5.306 15 C 0.059 3.941 16 C -0.165 4.165 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.109 4.109 20 Cl -0.058 7.058 21 C 0.050 3.950 22 N -0.424 5.424 23 C -0.260 4.260 24 H 0.089 0.911 25 H 0.146 0.854 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.229 0.771 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.228 0.772 33 H 0.222 0.778 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.512 -11.768 4.666 12.670 hybrid contribution 1.164 0.434 0.098 1.246 sum 1.675 -11.334 4.764 12.408 Atomic orbital electron populations 1.69765 1.07265 1.28706 1.37758 1.25858 0.94932 1.01144 0.92448 0.86165 0.80563 0.80893 0.78474 1.18631 1.19913 1.19952 1.19551 0.94512 0.90036 1.45432 0.90629 1.17460 0.91849 0.91281 0.87428 1.21596 0.97449 0.96490 1.02682 1.20622 0.98188 0.93615 0.98926 1.20369 0.99003 0.98808 1.09269 1.17329 0.95001 0.85562 0.94575 1.41913 1.09146 1.28244 1.51258 1.17254 0.91983 0.89607 0.95287 1.21222 0.92181 1.01913 1.01145 1.20682 0.99798 0.94418 0.99060 1.20537 0.93087 0.98261 1.02943 1.19947 0.94855 0.90362 1.05763 1.98301 1.88406 1.34385 1.84724 1.16926 0.86144 0.92817 0.99109 1.42258 1.09663 1.28589 1.61860 1.20936 1.02891 0.92955 1.09213 0.91111 0.85423 0.88931 0.88542 0.77135 0.83459 0.85650 0.85832 0.77200 0.77781 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.47 10.62 55.55 0.59 -19.88 16 2 C 0.07 1.77 5.40 -17.35 -0.09 1.67 16 3 Si 0.91 18.51 29.56 -169.99 -5.02 13.48 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -11.98 9.05 -37.74 -0.34 -12.33 16 8 H 0.08 1.88 7.85 -52.48 -0.41 1.47 16 9 C 0.12 3.14 5.55 -106.85 -0.59 2.55 16 10 C -0.16 -4.05 8.66 -38.83 -0.34 -4.38 16 11 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 12 C -0.25 -5.34 7.38 -39.07 -0.29 -5.63 16 13 C 0.17 3.54 5.87 -83.84 -0.49 3.05 16 14 N -0.68 -11.87 5.45 -8.31 -0.05 -11.92 16 15 C 0.16 2.72 6.44 -83.49 -0.54 2.18 16 16 C -0.14 -2.37 8.03 -39.40 -0.32 -2.69 16 17 C -0.12 -1.69 10.04 -39.57 -0.40 -2.09 16 18 C -0.13 -1.71 9.82 -39.53 -0.39 -2.10 16 19 C -0.08 -1.08 6.33 -39.35 -0.25 -1.33 16 20 Cl -0.09 -1.03 27.59 -51.86 -1.43 -2.46 16 21 C 0.16 2.29 6.77 -83.45 -0.57 1.73 16 22 N -0.88 -10.40 9.04 32.56 0.29 -10.11 16 23 C -0.24 -5.54 9.71 -38.67 -0.38 -5.91 16 24 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 25 H 0.13 3.32 6.14 -52.48 -0.32 3.00 16 26 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.10 1.91 6.63 -52.49 -0.35 1.56 16 28 H 0.39 5.92 7.04 -40.82 -0.29 5.63 16 29 H 0.15 2.73 5.35 -52.49 -0.28 2.45 16 30 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 32 H 0.40 4.15 7.51 -40.82 -0.31 3.84 16 33 H 0.39 4.18 7.04 -40.82 -0.29 3.89 16 34 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -26.54 300.72 -9.53 -36.07 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -3.07 Total: 18.08 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -5.37 Total: -27.79 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.84 Total: -41.91 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.43 Total: -2.46 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.54 -9.53 -36.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.533 kcal (2) G-P(sol) polarization free energy of solvation -26.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds