Wall clock time and date at job start Tue Mar 31 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86808 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46975 * 299.99982 * 3 2 1 6 6 H 1.48502 * 109.46896 * 59.99712 * 3 2 1 7 7 C 1.39921 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00115 * 178.35712 * 7 2 1 9 9 C 1.41412 * 119.99892 * 358.35982 * 7 2 1 10 10 C 1.40789 * 120.20719 * 33.63457 * 9 7 2 11 11 C 1.37651 * 119.90117 * 179.97438 * 10 9 7 12 12 C 1.38523 * 120.32535 * 359.72121 * 11 10 9 13 13 C 1.39319 * 120.41917 * 0.55183 * 12 11 10 14 14 N 1.39681 * 119.95376 * 179.71741 * 13 12 11 15 15 C 1.40018 * 120.00140 * 318.38236 * 14 13 12 16 16 C 1.38725 * 120.09177 * 352.47813 * 15 14 13 17 17 C 1.38242 * 120.01512 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.20154 * 0.04356 * 17 16 15 19 19 C 1.38350 * 120.19025 * 359.95584 * 18 17 16 20 20 Cl 1.73600 * 120.01159 * 180.29497 * 19 18 17 21 21 C 1.38761 * 119.97606 * 0.02562 * 19 18 17 22 22 N 1.40063 * 120.10004 * 180.02562 * 21 19 18 23 23 C 1.38350 * 120.09053 * 359.45089 * 13 12 11 24 24 H 0.96996 * 120.00296 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.04984 * 359.95322 * 10 9 7 26 26 H 1.07999 * 119.84040 * 180.02562 * 11 10 9 27 27 H 1.07992 * 119.78645 * 180.29730 * 12 11 10 28 28 H 0.97004 * 119.99839 * 138.37770 * 14 13 12 29 29 H 1.07998 * 119.99524 * 359.97438 * 16 15 14 30 30 H 1.08004 * 119.89492 * 180.02562 * 17 16 15 31 31 H 1.08007 * 119.90600 * 179.97438 * 18 17 16 32 32 H 0.97004 * 119.99971 * 359.97438 * 22 21 19 33 33 H 0.97000 * 120.00356 * 180.02562 * 22 21 19 34 34 H 1.08003 * 120.16102 * 180.24749 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3466 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0877 -1.2119 -0.0263 9 6 1.3014 -2.4361 0.0361 10 6 0.0536 -2.5528 -0.6054 11 6 -0.6285 -3.7478 -0.5672 12 6 -0.0907 -4.8393 0.0949 13 6 1.1404 -4.7372 0.7391 14 7 1.6708 -5.8423 1.4088 15 6 0.8379 -6.6555 2.1868 16 6 -0.4772 -6.2815 2.4217 17 6 -1.2983 -7.0858 3.1897 18 6 -0.8130 -8.2639 3.7267 19 6 0.4971 -8.6451 3.4978 20 17 1.0994 -10.1290 4.1679 21 6 1.3279 -7.8437 2.7278 22 7 2.6545 -8.2274 2.4939 23 6 1.8408 -3.5444 0.7117 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3679 -1.7059 -1.1265 26 1 -1.5854 -3.8364 -1.0600 27 1 -0.6311 -5.7740 0.1153 28 1 2.6163 -6.0463 1.3348 29 1 -0.8596 -5.3616 2.0045 30 1 -2.3220 -6.7929 3.3710 31 1 -1.4586 -8.8886 4.3263 32 1 2.9939 -9.0543 2.8708 33 1 3.2341 -7.6659 1.9557 34 1 2.7971 -3.4652 1.2073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313441829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:12 Heat of formation + Delta-G solvation = 29.858664 kcal Electronic energy + Delta-G solvation = -19334.215570 eV Core-core repulsion = 16256.427494 eV Total energy + Delta-G solvation = -3077.788076 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08321 -39.35562 -37.49909 -36.38709 -35.55081 -34.69872 -31.84573 -30.88932 -29.86341 -28.48212 -27.19315 -23.84600 -23.29525 -22.30594 -21.94323 -19.33848 -18.93861 -18.11905 -17.52358 -16.92654 -16.51930 -16.39119 -15.63303 -15.35547 -15.13594 -15.00395 -14.73837 -14.54598 -14.04458 -13.49297 -13.20326 -12.92575 -12.85893 -12.76438 -12.64216 -12.36163 -12.08187 -11.84720 -11.73904 -11.61726 -11.41739 -11.25049 -10.94694 -9.46223 -9.29374 -8.78774 -8.50578 -7.75743 -6.39482 0.33650 0.58916 0.97170 1.16116 1.23322 1.40147 1.51154 1.54896 2.23434 2.46265 2.77383 2.90564 2.93227 3.69595 4.05660 4.12402 4.43233 4.51888 4.58008 4.65836 4.70118 5.04869 5.11887 5.15102 5.19240 5.30466 5.40648 5.48415 5.65007 5.80941 5.89578 6.00316 6.12648 6.23111 6.37636 6.58839 6.78844 6.81202 6.88429 6.98087 7.08413 8.43072 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033156 B = 0.003465 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.300621 B = 8079.373891 C = 8432.374027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.501 4.501 8 H 0.072 0.928 9 C 0.095 3.905 10 C -0.190 4.190 11 C -0.093 4.093 12 C -0.245 4.245 13 C 0.184 3.816 14 N -0.680 5.680 15 C 0.136 3.864 16 C -0.158 4.158 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.088 4.088 20 Cl -0.066 7.066 21 C 0.161 3.839 22 N -0.870 5.870 23 C -0.254 4.254 24 H 0.284 0.716 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.404 0.596 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.407 0.593 33 H 0.400 0.600 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 -13.648 5.750 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.531 4.531 8 H 0.091 0.909 9 C 0.092 3.908 10 C -0.210 4.210 11 C -0.112 4.112 12 C -0.267 4.267 13 C 0.089 3.911 14 N -0.305 5.305 15 C 0.033 3.967 16 C -0.181 4.181 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.121 4.121 20 Cl -0.038 7.038 21 C 0.054 3.946 22 N -0.415 5.415 23 C -0.276 4.276 24 H 0.094 0.906 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.241 0.759 29 H 0.143 0.857 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.238 0.762 33 H 0.229 0.771 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.572 -13.555 5.785 14.749 hybrid contribution 1.100 0.693 -0.139 1.307 sum 1.672 -12.862 5.647 14.146 Atomic orbital electron populations 1.69847 1.08572 1.29840 1.38358 1.26697 0.95745 1.04235 0.91571 0.85100 0.79113 0.76360 0.78738 1.18364 1.18998 1.19386 1.19794 0.94585 0.91226 1.47532 0.90940 1.17773 0.92566 0.92179 0.88243 1.21497 0.98167 0.97088 1.04283 1.20866 0.98790 0.92978 0.98568 1.20564 0.99021 0.98998 1.08111 1.17305 0.94474 0.85884 0.93475 1.41717 1.09839 1.27501 1.51457 1.17364 0.92100 0.90589 0.96646 1.21187 0.92834 1.01740 1.02306 1.20904 1.00556 0.94334 0.98429 1.20875 0.93154 0.97792 1.01795 1.20143 0.95146 0.91148 1.05621 1.98312 1.88206 1.32913 1.84321 1.16963 0.87134 0.92075 0.98447 1.42253 1.08794 1.28915 1.61497 1.21028 1.03447 0.93435 1.09737 0.90552 0.87307 0.86723 0.86796 0.75927 0.85721 0.83512 0.83227 0.76200 0.77061 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.92 10.62 21.82 0.23 -43.69 16 2 C 0.03 1.51 5.40 85.25 0.46 1.97 16 3 Si 0.99 38.59 29.56 68.60 2.03 40.61 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -26.89 9.05 23.46 0.21 -26.67 16 8 H 0.07 3.76 7.85 -2.91 -0.02 3.74 16 9 C 0.10 5.06 5.55 -21.31 -0.12 4.95 16 10 C -0.19 -9.86 8.66 22.76 0.20 -9.66 16 11 C -0.09 -4.20 10.02 22.20 0.22 -3.98 16 12 C -0.25 -10.30 7.38 22.60 0.17 -10.14 16 13 C 0.18 7.73 5.87 38.18 0.22 7.95 16 14 N -0.68 -23.16 5.45 -180.20 -0.98 -24.14 16 15 C 0.14 4.34 6.44 38.24 0.25 4.59 16 16 C -0.16 -5.11 8.03 22.39 0.18 -4.93 16 17 C -0.12 -3.18 10.04 22.28 0.22 -2.96 16 18 C -0.12 -2.74 9.82 22.30 0.22 -2.52 16 19 C -0.09 -2.21 6.33 22.42 0.14 -2.07 16 20 Cl -0.07 -1.37 27.59 -2.72 -0.08 -1.45 16 21 C 0.16 4.37 6.77 38.24 0.26 4.63 16 22 N -0.87 -18.59 9.04 -50.89 -0.46 -19.05 16 23 C -0.25 -12.15 9.71 22.86 0.22 -11.93 16 24 H 0.28 13.50 8.30 -92.71 -0.77 12.73 16 25 H 0.11 5.97 6.14 -2.91 -0.02 5.96 16 26 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 27 H 0.11 4.37 6.63 -2.91 -0.02 4.35 16 28 H 0.40 11.78 7.04 -92.71 -0.65 11.13 16 29 H 0.13 4.59 5.35 -2.91 -0.02 4.58 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 31 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.41 7.39 7.51 -92.71 -0.70 6.70 16 33 H 0.40 7.70 7.04 -92.71 -0.65 7.04 16 34 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -58.23 300.72 2.78 -55.45 By element: Atomic # 1 Polarization: 43.84 SS G_CDS: -0.82 Total: 43.02 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 2.86 Total: -50.76 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.21 Total: -86.88 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -58.23 2.78 -55.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313441829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.305 kcal (2) G-P(sol) polarization free energy of solvation -58.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds