Wall clock time and date at job start Tue Mar 31 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47179 * 275.40861 * 3 2 1 5 5 H 1.48503 * 109.47448 * 35.41157 * 3 2 1 6 6 H 1.48506 * 109.47167 * 155.41303 * 3 2 1 7 7 C 1.39927 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00365 * 341.72652 * 7 2 1 9 9 C 1.41404 * 119.99891 * 161.73676 * 7 2 1 10 10 C 1.40784 * 120.20538 * 330.18471 * 9 7 2 11 11 C 1.37650 * 119.89383 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32456 * 359.74423 * 11 10 9 13 13 C 1.39299 * 120.42435 * 0.51256 * 12 11 10 14 14 N 1.39684 * 119.95318 * 179.76178 * 13 12 11 15 15 C 1.46501 * 119.99830 * 359.45084 * 14 13 12 16 16 C 1.50704 * 109.47081 * 180.27308 * 15 14 13 17 17 C 1.38646 * 120.79088 * 105.00248 * 16 15 14 18 18 C 1.38195 * 119.17587 * 179.97438 * 17 16 15 19 19 N 1.31885 * 120.79242 * 359.97438 * 18 17 16 20 20 C 1.31839 * 121.73960 * 359.97438 * 19 18 17 21 21 C 1.38361 * 120.74449 * 359.74542 * 20 19 18 22 22 Cl 1.73597 * 120.43288 * 180.28500 * 21 20 19 23 23 C 1.38309 * 120.09316 * 359.49192 * 13 12 11 24 24 H 0.97000 * 119.99571 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05338 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.84136 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.79125 * 180.27887 * 12 11 10 28 28 H 0.96995 * 119.99887 * 179.72663 * 14 13 12 29 29 H 1.08995 * 109.47471 * 300.27759 * 15 14 13 30 30 H 1.09002 * 109.46989 * 60.27874 * 15 14 13 31 31 H 1.08004 * 120.41497 * 359.95445 * 17 16 15 32 32 H 1.08003 * 119.60443 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.63043 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.16229 * 180.22833 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3939 5 1 1.5017 2.6170 0.8113 6 1 3.5924 1.4098 0.5826 7 6 2.0079 -1.2119 -0.0005 8 1 1.5087 -2.1237 0.2923 9 6 3.3685 -1.2426 -0.3843 10 6 3.8629 -0.3101 -1.3160 11 6 5.1884 -0.3462 -1.6855 12 6 6.0407 -1.2927 -1.1410 13 6 5.5646 -2.2251 -0.2220 14 7 6.4316 -3.1784 0.3171 15 6 7.8378 -3.2047 -0.0930 16 6 8.5494 -4.3229 0.6242 17 6 8.8830 -5.4932 -0.0401 18 6 9.5358 -6.4969 0.6500 19 7 9.8418 -6.3512 1.9245 20 6 9.5416 -5.2526 2.5887 21 6 8.8933 -4.2027 1.9629 22 17 8.5084 -2.7568 2.8432 23 6 4.2359 -2.2047 0.1615 24 1 -0.4849 0.8401 -0.0004 25 1 3.2032 0.4324 -1.7402 26 1 5.5668 0.3698 -2.3999 27 1 7.0802 -1.3103 -1.4336 28 1 6.1017 -3.8254 0.9601 29 1 7.8994 -3.3660 -1.1692 30 1 8.3077 -2.2541 0.1594 31 1 8.6355 -5.6191 -1.0838 32 1 9.7986 -7.4116 0.1394 33 1 9.8079 -5.1698 3.6320 34 1 3.8664 -2.9248 0.8767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313486979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:17 Heat of formation + Delta-G solvation = 48.016072 kcal Electronic energy + Delta-G solvation = -19104.739578 eV Core-core repulsion = 16027.738866 eV Total energy + Delta-G solvation = -3077.000711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59692 -38.13929 -36.80592 -35.65745 -33.56204 -32.47506 -31.33120 -30.19112 -28.72780 -25.82007 -25.06816 -23.84725 -22.40827 -21.09962 -20.17043 -17.62576 -17.15086 -17.05391 -16.29567 -15.89517 -15.14461 -14.95594 -14.52288 -14.35600 -14.21643 -13.71229 -13.20774 -12.85941 -12.51877 -12.37883 -12.27031 -12.19619 -11.83817 -11.43327 -11.33823 -10.90189 -10.76978 -10.44460 -10.03106 -9.86912 -9.72970 -9.50738 -9.27079 -9.22720 -8.92116 -7.60003 -6.88389 -6.51045 -4.44451 0.60387 0.74161 1.85366 2.69482 2.90798 3.18232 3.28350 3.29985 3.40264 4.05415 4.07052 4.09600 4.27875 4.39266 4.59675 4.61174 4.94800 5.27033 5.31364 5.45422 5.54534 5.65828 5.92557 6.03127 6.16255 6.30114 6.56573 6.78924 6.81519 6.97585 7.30277 7.49394 7.54035 7.67326 7.78022 7.99369 8.32468 8.38197 8.48967 8.77512 8.91146 10.14487 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.003727 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.595174 B = 7510.385407 C = 7675.130267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.451 4.451 8 H 0.088 0.912 9 C 0.126 3.874 10 C -0.270 4.270 11 C -0.048 4.048 12 C -0.301 4.301 13 C 0.238 3.762 14 N -0.752 5.752 15 C 0.172 3.828 16 C -0.045 4.045 17 C -0.144 4.144 18 C 0.098 3.902 19 N -0.471 5.471 20 C 0.110 3.890 21 C -0.079 4.079 22 Cl -0.038 7.038 23 C -0.275 4.275 24 H 0.284 0.716 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.391 0.609 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.389 -7.541 1.872 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.132 4.132 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.480 4.480 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.290 4.290 11 C -0.067 4.067 12 C -0.324 4.324 13 C 0.139 3.861 14 N -0.385 5.385 15 C 0.047 3.953 16 C -0.054 4.054 17 C -0.165 4.165 18 C -0.059 4.059 19 N -0.180 5.180 20 C -0.048 4.048 21 C -0.109 4.109 22 Cl -0.009 7.009 23 C -0.299 4.299 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.225 0.775 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.675 -7.939 2.300 19.513 hybrid contribution -0.377 1.291 -0.173 1.356 sum 17.298 -6.648 2.127 18.653 Atomic orbital electron populations 1.69711 1.08134 1.30108 1.35793 1.26138 0.94645 1.01756 0.90710 0.86277 0.81284 0.79636 0.78669 1.19777 1.22199 1.16733 1.19455 0.93275 0.95997 1.39248 0.89399 1.17435 0.92415 0.89660 0.88274 1.20909 0.95695 1.06113 1.06311 1.20357 0.93495 0.95991 0.96828 1.19880 0.98452 1.04256 1.09826 1.17480 0.89064 0.87808 0.91765 1.44282 1.06196 1.37248 1.50806 1.20009 0.83105 0.94660 0.97517 1.20474 0.96204 0.96423 0.92323 1.22193 0.99252 0.92865 1.02148 1.22898 0.94081 0.98759 0.90124 1.67812 1.18136 1.22724 1.09300 1.22816 0.94150 0.87379 1.00476 1.22153 1.03072 0.91890 0.93767 1.98428 1.92618 1.35060 1.74756 1.20387 0.91337 1.08342 1.09826 0.90608 0.88543 0.89019 0.89086 0.77521 0.91366 0.91088 0.83560 0.81907 0.81804 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.10 13.93 55.55 0.77 -21.32 16 2 C 0.09 2.30 5.40 -17.34 -0.09 2.21 16 3 Si 0.91 21.40 24.52 -169.99 -4.17 17.24 16 4 H -0.27 -6.17 6.71 56.52 0.38 -5.79 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.88 6.86 56.52 0.39 -5.50 16 7 C -0.45 -12.45 9.57 -37.75 -0.36 -12.81 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.13 3.25 5.10 -106.85 -0.55 2.70 16 10 C -0.27 -6.63 7.17 -38.83 -0.28 -6.91 16 11 C -0.05 -1.04 10.02 -39.69 -0.40 -1.44 16 12 C -0.30 -6.18 9.32 -39.08 -0.36 -6.55 16 13 C 0.24 4.88 6.64 -83.86 -0.56 4.32 16 14 N -0.75 -12.15 5.72 -59.86 -0.34 -12.49 16 15 C 0.17 2.24 4.45 -5.19 -0.02 2.22 16 16 C -0.05 -0.50 5.29 -104.29 -0.55 -1.06 16 17 C -0.14 -1.32 9.77 -39.45 -0.39 -1.71 16 18 C 0.10 0.87 11.18 -17.54 -0.20 0.67 16 19 N -0.47 -5.02 10.36 -13.22 -0.14 -5.15 16 20 C 0.11 1.13 10.99 -17.50 -0.19 0.94 16 21 C -0.08 -0.89 6.34 -39.35 -0.25 -1.14 16 22 Cl -0.04 -0.46 27.81 -51.86 -1.44 -1.90 16 23 C -0.27 -6.45 9.63 -38.68 -0.37 -6.82 16 24 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 25 H 0.10 2.38 4.72 -52.49 -0.25 2.13 16 26 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.09 1.63 6.70 -52.48 -0.35 1.28 16 28 H 0.39 6.08 8.47 -40.82 -0.35 5.73 16 29 H 0.07 0.84 7.82 -51.93 -0.41 0.44 16 30 H 0.07 0.97 7.46 -51.93 -0.39 0.58 16 31 H 0.15 1.06 8.05 -52.48 -0.42 0.63 16 32 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 305.69 15.07 4.61 4.61 Total: -1.00 -29.08 305.69 -8.72 -37.80 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -3.45 Total: 6.59 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -4.57 Total: -25.37 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.29 Total: -38.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.17 Total: 17.24 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.44 Total: -1.90 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.08 -8.72 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313486979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.819 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds