Wall clock time and date at job start Tue Mar 31 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47179 * 275.40861 * 3 2 1 5 5 H 1.48503 * 109.47448 * 35.41157 * 3 2 1 6 6 H 1.48506 * 109.47167 * 155.41303 * 3 2 1 7 7 C 1.39927 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00365 * 341.72652 * 7 2 1 9 9 C 1.41404 * 119.99891 * 161.73676 * 7 2 1 10 10 C 1.40784 * 120.20538 * 330.18471 * 9 7 2 11 11 C 1.37650 * 119.89383 * 180.02562 * 10 9 7 12 12 C 1.38520 * 120.32456 * 359.74423 * 11 10 9 13 13 C 1.39299 * 120.42435 * 0.51256 * 12 11 10 14 14 N 1.39684 * 119.95318 * 179.76178 * 13 12 11 15 15 C 1.46501 * 119.99830 * 359.45084 * 14 13 12 16 16 C 1.50704 * 109.47081 * 180.27308 * 15 14 13 17 17 C 1.38646 * 120.79088 * 105.00248 * 16 15 14 18 18 C 1.38195 * 119.17587 * 179.97438 * 17 16 15 19 19 N 1.31885 * 120.79242 * 359.97438 * 18 17 16 20 20 C 1.31839 * 121.73960 * 359.97438 * 19 18 17 21 21 C 1.38361 * 120.74449 * 359.74542 * 20 19 18 22 22 Cl 1.73597 * 120.43288 * 180.28500 * 21 20 19 23 23 C 1.38309 * 120.09316 * 359.49192 * 13 12 11 24 24 H 0.97000 * 119.99571 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05338 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.84136 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.79125 * 180.27887 * 12 11 10 28 28 H 0.96995 * 119.99887 * 179.72663 * 14 13 12 29 29 H 1.08995 * 109.47471 * 300.27759 * 15 14 13 30 30 H 1.09002 * 109.46989 * 60.27874 * 15 14 13 31 31 H 1.08004 * 120.41497 * 359.95445 * 17 16 15 32 32 H 1.08003 * 119.60443 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.63043 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.16229 * 180.22833 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3939 5 1 1.5017 2.6170 0.8113 6 1 3.5924 1.4098 0.5826 7 6 2.0079 -1.2119 -0.0005 8 1 1.5087 -2.1237 0.2923 9 6 3.3685 -1.2426 -0.3843 10 6 3.8629 -0.3101 -1.3160 11 6 5.1884 -0.3462 -1.6855 12 6 6.0407 -1.2927 -1.1410 13 6 5.5646 -2.2251 -0.2220 14 7 6.4316 -3.1784 0.3171 15 6 7.8378 -3.2047 -0.0930 16 6 8.5494 -4.3229 0.6242 17 6 8.8830 -5.4932 -0.0401 18 6 9.5358 -6.4969 0.6500 19 7 9.8418 -6.3512 1.9245 20 6 9.5416 -5.2526 2.5887 21 6 8.8933 -4.2027 1.9629 22 17 8.5084 -2.7568 2.8432 23 6 4.2359 -2.2047 0.1615 24 1 -0.4849 0.8401 -0.0004 25 1 3.2032 0.4324 -1.7402 26 1 5.5668 0.3698 -2.3999 27 1 7.0802 -1.3103 -1.4336 28 1 6.1017 -3.8254 0.9601 29 1 7.8994 -3.3660 -1.1692 30 1 8.3077 -2.2541 0.1594 31 1 8.6355 -5.6191 -1.0838 32 1 9.7986 -7.4116 0.1394 33 1 9.8079 -5.1698 3.6320 34 1 3.8664 -2.9248 0.8767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313486979.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:17 Heat of formation + Delta-G solvation = 30.505892 kcal Electronic energy + Delta-G solvation = -19105.498876 eV Core-core repulsion = 16027.738866 eV Total energy + Delta-G solvation = -3077.760010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38977 -39.80359 -37.70585 -37.03018 -35.29651 -33.73522 -32.08975 -32.02591 -30.17731 -27.12109 -26.87240 -24.60347 -23.42902 -22.81106 -21.86216 -19.35208 -18.18445 -17.87202 -17.69240 -17.13731 -16.51036 -16.33630 -16.29380 -15.34697 -15.09369 -14.88516 -14.77440 -14.38930 -14.28232 -13.74608 -13.60101 -13.18879 -13.06586 -12.99120 -12.69875 -12.56078 -12.25624 -12.22785 -11.63073 -11.36803 -11.08740 -10.81546 -10.65648 -10.55162 -10.01033 -9.45912 -8.86557 -8.09826 -6.48794 -0.16785 -0.03905 0.87576 1.00437 1.11047 1.29905 1.44832 1.53488 2.17328 2.46630 2.68557 2.87026 3.35806 3.42343 3.59858 3.65251 3.85344 4.20315 4.37795 4.46824 4.55131 4.60992 4.64634 4.74012 4.75656 5.01166 5.07517 5.10507 5.18534 5.46127 5.54234 5.75943 5.87988 6.00736 6.09681 6.40042 6.69219 6.76051 6.82153 6.86745 7.04325 8.22607 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.003727 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.595174 B = 7510.385407 C = 7675.130267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.049 3.951 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.491 4.491 8 H 0.051 0.949 9 C 0.108 3.892 10 C -0.293 4.293 11 C -0.047 4.047 12 C -0.287 4.287 13 C 0.249 3.751 14 N -0.742 5.742 15 C 0.171 3.829 16 C -0.056 4.056 17 C -0.137 4.137 18 C 0.101 3.899 19 N -0.487 5.487 20 C 0.106 3.894 21 C -0.088 4.088 22 Cl -0.053 7.053 23 C -0.294 4.294 24 H 0.292 0.708 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.394 0.606 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.171 0.829 32 H 0.196 0.804 33 H 0.178 0.822 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.835 -7.818 0.719 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.165 4.165 3 Si 0.795 3.205 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.104 3.896 10 C -0.313 4.313 11 C -0.066 4.066 12 C -0.310 4.310 13 C 0.147 3.853 14 N -0.373 5.373 15 C 0.048 3.952 16 C -0.065 4.065 17 C -0.157 4.157 18 C -0.056 4.056 19 N -0.196 5.196 20 C -0.052 4.052 21 C -0.117 4.117 22 Cl -0.024 7.024 23 C -0.319 4.319 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.145 0.855 27 H 0.146 0.854 28 H 0.228 0.772 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.188 0.812 32 H 0.212 0.788 33 H 0.195 0.805 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.153 -8.247 1.159 22.733 hybrid contribution -1.166 1.132 0.159 1.633 sum 19.986 -7.114 1.317 21.256 Atomic orbital electron populations 1.69741 1.09199 1.31277 1.38024 1.26802 0.95269 1.04222 0.90196 0.85416 0.79429 0.76364 0.79324 1.18337 1.20818 1.17892 1.19457 0.94843 0.95402 1.42363 0.93124 1.17572 0.91946 0.91047 0.88987 1.20970 0.97171 1.06286 1.06900 1.20765 0.92386 0.96610 0.96833 1.20340 0.99989 1.02605 1.08037 1.17500 0.88481 0.88244 0.91080 1.44354 1.07230 1.35797 1.49911 1.20141 0.80887 0.95567 0.98654 1.20381 0.97069 0.96771 0.92328 1.22463 0.98239 0.91810 1.03189 1.23458 0.92845 0.99718 0.89563 1.67881 1.18608 1.22790 1.10328 1.23040 0.93824 0.87076 1.01212 1.22222 1.03924 0.91673 0.93925 1.98423 1.92812 1.36002 1.75188 1.20479 0.92839 1.08176 1.10375 0.89771 0.89129 0.85548 0.85431 0.77179 0.89647 0.91261 0.81164 0.78771 0.80500 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.62 13.93 21.82 0.30 -48.32 16 2 C 0.05 2.72 5.40 85.25 0.46 3.18 16 3 Si 0.97 44.77 24.52 68.60 1.68 46.45 16 4 H -0.26 -11.20 6.71 99.48 0.67 -10.53 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -12.07 6.86 99.48 0.68 -11.38 16 7 C -0.49 -28.70 9.57 23.46 0.22 -28.48 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 C 0.11 5.68 5.10 -21.31 -0.11 5.57 16 10 C -0.29 -14.16 7.17 22.75 0.16 -13.99 16 11 C -0.05 -1.92 10.02 22.20 0.22 -1.70 16 12 C -0.29 -10.67 9.32 22.59 0.21 -10.46 16 13 C 0.25 9.69 6.64 38.16 0.25 9.94 16 14 N -0.74 -22.07 5.72 -343.30 -1.96 -24.04 16 15 C 0.17 3.85 4.45 85.63 0.38 4.23 16 16 C -0.06 -1.09 5.29 -19.65 -0.10 -1.19 16 17 C -0.14 -1.98 9.77 22.36 0.22 -1.76 16 18 C 0.10 1.42 11.18 84.67 0.95 2.36 16 19 N -0.49 -9.06 10.36 -195.74 -2.03 -11.08 16 20 C 0.11 1.96 10.99 84.72 0.93 2.89 16 21 C -0.09 -1.79 6.34 22.42 0.14 -1.64 16 22 Cl -0.05 -1.22 27.81 -2.72 -0.08 -1.29 16 23 C -0.29 -13.92 9.63 22.86 0.22 -13.70 16 24 H 0.29 14.90 8.30 -92.71 -0.77 14.13 16 25 H 0.09 4.42 4.72 -2.91 -0.01 4.41 16 26 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 27 H 0.13 3.84 6.70 -2.91 -0.02 3.83 16 28 H 0.39 11.55 8.47 -92.71 -0.79 10.76 16 29 H 0.09 1.69 7.82 -2.39 -0.02 1.67 16 30 H 0.07 1.63 7.46 -2.39 -0.02 1.62 16 31 H 0.17 1.62 8.05 -2.91 -0.02 1.60 16 32 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.09 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -65.21 305.69 2.37 -62.83 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.29 Total: 20.20 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 4.16 Total: -44.75 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -3.69 Total: -83.44 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.68 Total: 46.45 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.29 kcal Total: -65.21 2.37 -62.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313486979.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.341 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds