Wall clock time and date at job start Tue Mar 31 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29437 * 124.79850 * 2 1 4 4 C 1.30938 * 117.36144 * 180.02562 * 3 2 1 5 5 C 1.35684 * 114.19074 * 359.97438 * 4 3 2 6 6 C 1.46652 * 126.13173 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00156 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99567 * 180.27702 * 6 5 4 9 9 C 1.39858 * 119.99818 * 174.82281 * 8 6 5 10 10 C 1.39317 * 119.94748 * 326.46096 * 9 8 6 11 11 C 1.38484 * 120.42618 * 179.72298 * 10 9 8 12 12 C 1.37692 * 120.31994 * 0.54922 * 11 10 9 13 13 C 1.40738 * 119.88970 * 359.73118 * 12 11 10 14 14 C 1.41414 * 120.20796 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99932 * 151.36040 * 14 13 12 16 16 C 1.39929 * 119.99842 * 331.36503 * 14 13 12 17 17 N 1.30828 * 119.99968 * 166.74820 * 16 14 13 18 18 Si 1.86794 * 120.00027 * 346.74937 * 16 14 13 19 19 H 1.48500 * 109.47204 * 95.30446 * 18 16 14 20 20 H 1.48509 * 109.47244 * 215.30265 * 18 16 14 21 21 H 1.48495 * 109.47443 * 335.30175 * 18 16 14 22 22 C 1.38256 * 119.95271 * 146.73795 * 9 8 6 23 23 S 1.70953 * 124.80490 * 180.31971 * 2 1 3 24 24 H 1.09000 * 109.47478 * 89.97414 * 1 2 3 25 25 H 1.09003 * 109.47058 * 209.97492 * 1 2 3 26 26 H 1.09002 * 109.47472 * 329.96991 * 1 2 3 27 27 H 1.08004 * 122.90332 * 180.02562 * 4 3 2 28 28 H 0.97001 * 120.00836 * 354.82069 * 8 6 5 29 29 H 1.07998 * 119.78614 * 359.97438 * 10 9 8 30 30 H 1.07996 * 119.83669 * 180.25525 * 11 10 9 31 31 H 1.07998 * 120.05008 * 179.74254 * 12 11 10 32 32 H 0.97004 * 120.00314 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.16189 * 359.96915 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0629 0.0000 4 6 3.5440 0.8934 -0.0005 5 6 3.9351 -0.4058 -0.0004 6 6 5.3186 -0.8924 -0.0015 7 8 6.2423 -0.1001 -0.0030 8 7 5.5669 -2.2171 -0.0069 9 6 6.8815 -2.6816 -0.1172 10 6 7.8084 -1.9719 -0.8775 11 6 9.1141 -2.4198 -0.9888 12 6 9.5076 -3.5786 -0.3577 13 6 8.5808 -4.3092 0.4090 14 6 8.9778 -5.4999 1.0604 15 1 8.4836 -5.8086 1.9697 16 6 10.0111 -6.2782 0.5268 17 7 10.5547 -7.2260 1.2464 18 14 10.6144 -5.9637 -1.2128 19 1 11.7976 -5.0673 -1.1720 20 1 10.9917 -7.2527 -1.8466 21 1 9.5337 -5.3213 -2.0030 22 6 7.2576 -3.8474 0.5237 23 16 2.4827 -1.4037 -0.0078 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 4.2432 1.7166 -0.0002 28 1 4.8340 -2.8483 0.0657 29 1 7.5078 -1.0645 -1.3800 30 1 9.8258 -1.8600 -1.5772 31 1 10.5259 -3.9261 -0.4509 32 1 11.2712 -7.7653 0.8767 33 1 6.5388 -4.4005 1.1101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313520112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:27 Heat of formation + Delta-G solvation = 30.464159 kcal Electronic energy + Delta-G solvation = -19012.873633 eV Core-core repulsion = 15937.155520 eV Total energy + Delta-G solvation = -3075.718113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38292 -39.46658 -37.47878 -34.62159 -33.32017 -32.56662 -30.37979 -29.67443 -28.19439 -25.18675 -24.68604 -22.81574 -21.21896 -20.66947 -19.49906 -18.51291 -17.85942 -16.80694 -16.03932 -15.64327 -15.51356 -14.95184 -14.78345 -14.36846 -14.16704 -13.73621 -13.61233 -12.95010 -12.78579 -12.68921 -12.66441 -12.10033 -11.83460 -11.74443 -11.10302 -10.80601 -10.67008 -10.32478 -10.08974 -9.82363 -9.73332 -9.65518 -9.43819 -9.14296 -9.04336 -7.73740 -7.22352 -6.95299 -4.54236 0.01314 0.89819 1.31509 2.16487 2.53095 2.59741 3.10127 3.20444 3.25242 3.28679 3.34297 3.80092 3.96799 4.48745 4.63661 4.78972 5.00600 5.03911 5.11583 5.37940 5.45115 5.86153 5.97824 6.27763 6.29086 6.43265 6.66257 6.70633 7.07018 7.22917 7.33925 7.40754 7.60076 7.77650 7.80293 8.02305 8.27980 8.35612 8.58693 8.76791 10.07130 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036176 B = 0.003507 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.816301 B = 7981.831120 C = 8433.547335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.054 3.946 3 N -0.480 5.480 4 C 0.118 3.882 5 C -0.285 4.285 6 C 0.589 3.411 7 O -0.504 6.504 8 N -0.660 5.660 9 C 0.165 3.835 10 C -0.230 4.230 11 C -0.066 4.066 12 C -0.240 4.240 13 C 0.106 3.894 14 C -0.445 4.445 15 H 0.091 0.909 16 C 0.082 3.918 17 N -0.812 5.812 18 Si 0.915 3.085 19 H -0.271 1.271 20 H -0.294 1.294 21 H -0.240 1.240 22 C -0.229 4.229 23 S 0.165 5.835 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.190 0.810 28 H 0.400 0.600 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.285 0.715 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.216 8.485 -3.824 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.220 4.220 3 N -0.194 5.194 4 C -0.039 4.039 5 C -0.409 4.409 6 C 0.374 3.626 7 O -0.380 6.380 8 N -0.303 5.303 9 C 0.073 3.927 10 C -0.251 4.251 11 C -0.085 4.085 12 C -0.260 4.260 13 C 0.102 3.898 14 C -0.474 4.474 15 H 0.109 0.891 16 C -0.136 4.136 17 N -0.437 5.437 18 Si 0.742 3.258 19 H -0.198 1.198 20 H -0.222 1.222 21 H -0.164 1.164 22 C -0.250 4.250 23 S 0.420 5.580 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.206 0.794 28 H 0.235 0.765 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.940 8.244 -3.758 19.211 hybrid contribution 0.684 0.390 -0.543 0.957 sum -16.256 8.634 -4.301 18.902 Atomic orbital electron populations 1.20528 0.84684 1.04635 1.04269 1.27491 1.02229 0.91127 1.01201 1.66238 1.04812 1.31174 1.17207 1.22192 0.90677 0.95555 0.95489 1.25856 0.97914 0.97868 1.19242 1.16711 0.85862 0.82737 0.77278 1.90869 1.43795 1.54951 1.48425 1.43358 1.08759 1.06117 1.72099 1.17470 0.82207 0.95268 0.97739 1.20336 0.93965 1.03205 1.07557 1.20473 0.94793 0.95521 0.97733 1.21021 0.98684 0.98214 1.08034 1.17475 0.89970 0.92481 0.89871 1.19463 1.14217 1.04165 1.09532 0.89147 1.26163 0.93642 0.93685 1.00131 1.69657 1.19697 1.16818 1.37506 0.86284 0.80425 0.76676 0.82403 1.19795 1.22187 1.16352 1.20685 0.96564 0.99531 1.08269 1.83943 0.96648 1.11453 1.65911 0.89124 0.89702 0.88889 0.79359 0.76532 0.87361 0.88285 0.88251 0.90416 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.46 36.00 0.38 -0.06 16 2 C 0.05 0.52 7.38 -13.29 -0.10 0.42 16 3 N -0.48 -5.75 10.51 -11.50 -0.12 -5.87 16 4 C 0.12 1.52 11.09 -18.85 -0.21 1.31 16 5 C -0.28 -3.86 6.48 -37.10 -0.24 -4.10 16 6 C 0.59 10.13 7.52 -12.87 -0.10 10.03 16 7 O -0.50 -10.33 14.53 5.19 0.08 -10.25 16 8 N -0.66 -11.42 5.33 -11.10 -0.06 -11.48 16 9 C 0.16 3.53 6.26 -83.79 -0.52 3.00 16 10 C -0.23 -5.11 8.66 -39.09 -0.34 -5.45 16 11 C -0.07 -1.49 10.02 -39.69 -0.40 -1.89 16 12 C -0.24 -5.84 6.92 -38.84 -0.27 -6.11 16 13 C 0.11 2.67 5.19 -106.85 -0.55 2.11 16 14 C -0.45 -11.91 9.61 -37.74 -0.36 -12.28 16 15 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 16 C 0.08 2.14 5.47 -17.35 -0.09 2.05 16 17 N -0.81 -21.57 13.93 55.55 0.77 -20.80 16 18 Si 0.91 20.73 24.37 -169.99 -4.14 16.59 16 19 H -0.27 -6.01 6.77 56.52 0.38 -5.62 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.24 -5.53 6.48 56.52 0.37 -5.16 16 22 C -0.23 -5.23 9.70 -38.68 -0.38 -5.61 16 23 S 0.16 1.61 22.32 -107.50 -2.40 -0.78 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.19 2.27 8.06 -52.48 -0.42 1.85 16 28 H 0.40 5.64 8.01 -40.82 -0.33 5.32 16 29 H 0.11 2.36 6.40 -52.49 -0.34 2.03 16 30 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.10 2.39 4.20 -52.49 -0.22 2.17 16 32 H 0.29 6.87 8.30 -40.82 -0.34 6.53 16 33 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -30.73 299.65 -7.57 -38.30 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -3.03 Total: 6.36 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.18 Total: -16.57 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.59 Total: -38.15 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.59 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.40 Total: -0.78 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.73 -7.57 -38.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313520112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.765 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds