Wall clock time and date at job start Tue Mar 31 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29437 * 124.79850 * 2 1 4 4 C 1.30938 * 117.36144 * 180.02562 * 3 2 1 5 5 C 1.35684 * 114.19074 * 359.97438 * 4 3 2 6 6 C 1.46652 * 126.13173 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00156 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99567 * 180.27702 * 6 5 4 9 9 C 1.39858 * 119.99818 * 174.82281 * 8 6 5 10 10 C 1.39317 * 119.94748 * 326.46096 * 9 8 6 11 11 C 1.38484 * 120.42618 * 179.72298 * 10 9 8 12 12 C 1.37692 * 120.31994 * 0.54922 * 11 10 9 13 13 C 1.40738 * 119.88970 * 359.73118 * 12 11 10 14 14 C 1.41414 * 120.20796 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99932 * 151.36040 * 14 13 12 16 16 C 1.39929 * 119.99842 * 331.36503 * 14 13 12 17 17 N 1.30828 * 119.99968 * 166.74820 * 16 14 13 18 18 Si 1.86794 * 120.00027 * 346.74937 * 16 14 13 19 19 H 1.48500 * 109.47204 * 95.30446 * 18 16 14 20 20 H 1.48509 * 109.47244 * 215.30265 * 18 16 14 21 21 H 1.48495 * 109.47443 * 335.30175 * 18 16 14 22 22 C 1.38256 * 119.95271 * 146.73795 * 9 8 6 23 23 S 1.70953 * 124.80490 * 180.31971 * 2 1 3 24 24 H 1.09000 * 109.47478 * 89.97414 * 1 2 3 25 25 H 1.09003 * 109.47058 * 209.97492 * 1 2 3 26 26 H 1.09002 * 109.47472 * 329.96991 * 1 2 3 27 27 H 1.08004 * 122.90332 * 180.02562 * 4 3 2 28 28 H 0.97001 * 120.00836 * 354.82069 * 8 6 5 29 29 H 1.07998 * 119.78614 * 359.97438 * 10 9 8 30 30 H 1.07996 * 119.83669 * 180.25525 * 11 10 9 31 31 H 1.07998 * 120.05008 * 179.74254 * 12 11 10 32 32 H 0.97004 * 120.00314 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.16189 * 359.96915 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0629 0.0000 4 6 3.5440 0.8934 -0.0005 5 6 3.9351 -0.4058 -0.0004 6 6 5.3186 -0.8924 -0.0015 7 8 6.2423 -0.1001 -0.0030 8 7 5.5669 -2.2171 -0.0069 9 6 6.8815 -2.6816 -0.1172 10 6 7.8084 -1.9719 -0.8775 11 6 9.1141 -2.4198 -0.9888 12 6 9.5076 -3.5786 -0.3577 13 6 8.5808 -4.3092 0.4090 14 6 8.9778 -5.4999 1.0604 15 1 8.4836 -5.8086 1.9697 16 6 10.0111 -6.2782 0.5268 17 7 10.5547 -7.2260 1.2464 18 14 10.6144 -5.9637 -1.2128 19 1 11.7976 -5.0673 -1.1720 20 1 10.9917 -7.2527 -1.8466 21 1 9.5337 -5.3213 -2.0030 22 6 7.2576 -3.8474 0.5237 23 16 2.4827 -1.4037 -0.0078 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 4.2432 1.7166 -0.0002 28 1 4.8340 -2.8483 0.0657 29 1 7.5078 -1.0645 -1.3800 30 1 9.8258 -1.8600 -1.5772 31 1 10.5259 -3.9261 -0.4509 32 1 11.2712 -7.7653 0.8767 33 1 6.5388 -4.4005 1.1101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313520112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:27 Heat of formation + Delta-G solvation = 10.051291 kcal Electronic energy + Delta-G solvation = -19013.758801 eV Core-core repulsion = 15937.155520 eV Total energy + Delta-G solvation = -3076.603281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63152 -40.63149 -39.17444 -36.25953 -35.13851 -33.37871 -32.22722 -31.04194 -29.39144 -27.08709 -25.61422 -24.11009 -22.96870 -22.20861 -20.70955 -19.72237 -19.36142 -18.10233 -17.77891 -17.15371 -16.74732 -16.29989 -16.17890 -15.75569 -15.33275 -15.25276 -14.53756 -14.52272 -14.43209 -13.96103 -13.54093 -13.44164 -13.22515 -12.94879 -12.72451 -12.62374 -12.48787 -12.00864 -11.57476 -11.40700 -11.23924 -10.91146 -10.73884 -10.63266 -9.99364 -9.60440 -8.95652 -8.89619 -6.55301 -0.91318 0.04930 0.44373 0.61879 0.75061 1.27823 1.35273 1.42302 1.51308 1.90025 2.00400 2.13289 2.60911 3.05126 3.44700 3.61347 3.93407 4.14037 4.26607 4.46222 4.53525 4.60742 4.67464 4.75289 4.89409 4.90482 4.94001 5.15827 5.28070 5.49167 5.62653 5.75673 5.88643 6.12108 6.27734 6.39501 6.49947 6.65566 6.77863 6.95091 8.18216 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036176 B = 0.003507 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.816301 B = 7981.831120 C = 8433.547335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.068 3.932 3 N -0.505 5.505 4 C 0.127 3.873 5 C -0.325 4.325 6 C 0.593 3.407 7 O -0.544 6.544 8 N -0.655 5.655 9 C 0.171 3.829 10 C -0.229 4.229 11 C -0.067 4.067 12 C -0.255 4.255 13 C 0.089 3.911 14 C -0.477 4.477 15 H 0.060 0.940 16 C 0.047 3.953 17 N -0.851 5.851 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.246 1.246 22 C -0.235 4.235 23 S 0.216 5.784 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.187 0.813 28 H 0.416 0.584 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.101 0.899 32 H 0.294 0.706 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.512 9.522 -5.237 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.205 4.205 3 N -0.220 5.220 4 C -0.032 4.032 5 C -0.449 4.449 6 C 0.381 3.619 7 O -0.423 6.423 8 N -0.300 5.300 9 C 0.078 3.922 10 C -0.250 4.250 11 C -0.086 4.086 12 C -0.275 4.275 13 C 0.086 3.914 14 C -0.506 4.506 15 H 0.079 0.921 16 C -0.168 4.168 17 N -0.477 5.477 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.208 1.208 21 H -0.170 1.170 22 C -0.257 4.257 23 S 0.473 5.527 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.204 0.796 28 H 0.253 0.747 29 H 0.133 0.867 30 H 0.147 0.853 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -19.286 9.256 -5.161 22.006 hybrid contribution 1.115 0.233 -0.080 1.142 sum -18.171 9.489 -5.241 21.158 Atomic orbital electron populations 1.20829 0.81503 1.06212 1.05952 1.28334 1.03967 0.90559 0.97686 1.66347 1.04357 1.32198 1.19142 1.22290 0.91360 0.95434 0.94072 1.25455 0.97486 0.99095 1.22854 1.17094 0.87099 0.81965 0.75730 1.90834 1.45610 1.55700 1.50150 1.43263 1.07704 1.06863 1.72138 1.17491 0.83931 0.94396 0.96349 1.20610 0.94195 1.03159 1.06994 1.20804 0.95534 0.94924 0.97343 1.21125 0.98685 0.99025 1.08651 1.17629 0.91194 0.92225 0.90326 1.19452 1.15693 1.05851 1.09633 0.92139 1.26823 0.93511 0.93268 1.03176 1.69683 1.20873 1.18050 1.39083 0.85473 0.79953 0.77175 0.78235 1.18705 1.20774 1.16951 1.20833 0.96195 1.00245 1.08443 1.83740 0.93996 1.10072 1.64900 0.87121 0.87239 0.88179 0.79596 0.74685 0.86705 0.85296 0.88182 0.89514 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.46 71.24 0.75 0.18 16 2 C 0.07 1.08 7.38 88.46 0.65 1.74 16 3 N -0.51 -11.03 10.51 -190.28 -2.00 -13.03 16 4 C 0.13 3.13 11.09 84.23 0.93 4.06 16 5 C -0.32 -8.34 6.48 23.88 0.15 -8.18 16 6 C 0.59 19.87 7.52 86.44 0.65 20.52 16 7 O -0.54 -22.12 14.53 -4.34 -0.06 -22.18 16 8 N -0.66 -21.88 5.33 -307.24 -1.64 -23.51 16 9 C 0.17 7.18 6.26 38.12 0.24 7.42 16 10 C -0.23 -9.87 8.66 22.59 0.20 -9.68 16 11 C -0.07 -2.93 10.02 22.20 0.22 -2.70 16 12 C -0.26 -12.28 6.92 22.75 0.16 -12.12 16 13 C 0.09 4.57 5.19 -21.31 -0.11 4.46 16 14 C -0.48 -26.47 9.61 23.46 0.23 -26.25 16 15 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 16 C 0.05 2.49 5.47 85.25 0.47 2.95 16 17 N -0.85 -46.39 13.93 21.82 0.30 -46.08 16 18 Si 0.97 42.61 24.37 68.60 1.67 44.28 16 19 H -0.26 -10.98 6.77 99.48 0.67 -10.31 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 21 H -0.25 -10.95 6.48 99.48 0.64 -10.31 16 22 C -0.24 -10.76 9.70 22.85 0.22 -10.54 16 23 S 0.22 3.61 22.32 -56.49 -1.26 2.35 16 24 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.19 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.42 11.03 8.01 -92.71 -0.74 10.29 16 29 H 0.11 4.84 6.40 -2.91 -0.02 4.82 16 30 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.10 4.74 4.20 -2.91 -0.01 4.73 16 32 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 33 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -67.66 299.65 2.10 -65.56 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.33 Total: 20.76 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.75 Total: -28.14 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.33 Total: -82.63 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.18 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.67 Total: 44.28 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.26 Total: 2.35 kcal Total: -67.66 2.10 -65.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313520112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.615 kcal (2) G-P(sol) polarization free energy of solvation -67.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds