Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31827 * 122.85230 * 2 1 4 4 C 1.28950 * 117.20394 * 180.02562 * 3 2 1 5 5 S 1.70958 * 110.32525 * 359.72451 * 4 3 2 6 6 C 1.34476 * 122.85862 * 180.02562 * 2 1 3 7 7 N 1.39567 * 126.07502 * 359.97438 * 6 2 1 8 8 C 1.34780 * 120.00039 * 179.97438 * 7 6 2 9 9 O 1.21636 * 119.99932 * 0.02562 * 8 7 6 10 10 C 1.47552 * 120.00123 * 180.02562 * 8 7 6 11 11 C 1.40059 * 119.90247 * 180.02562 * 10 8 7 12 12 C 1.36277 * 120.11069 * 180.29715 * 11 10 8 13 13 C 1.40914 * 119.89038 * 359.47602 * 12 11 10 14 14 C 1.41072 * 120.09920 * 180.22905 * 13 12 11 15 15 H 1.08004 * 119.99653 * 204.83851 * 14 13 12 16 16 C 1.40209 * 120.00201 * 24.83829 * 14 13 12 17 17 N 1.30654 * 120.00115 * 17.72472 * 16 14 13 18 18 Si 1.86806 * 119.99995 * 197.73206 * 16 14 13 19 19 H 1.48494 * 109.47162 * 90.00147 * 18 16 14 20 20 H 1.48503 * 109.46664 * 209.99968 * 18 16 14 21 21 H 1.48493 * 109.46745 * 329.99401 * 18 16 14 22 22 C 1.40910 * 119.80068 * 0.52163 * 13 12 11 23 23 C 1.36290 * 119.89232 * 359.73242 * 22 13 12 24 24 H 1.09000 * 109.47470 * 269.97768 * 1 2 3 25 25 H 1.09001 * 109.47252 * 29.98370 * 1 2 3 26 26 H 1.09010 * 109.46669 * 149.97682 * 1 2 3 27 27 H 1.07992 * 124.84184 * 179.97438 * 4 3 2 28 28 H 0.96999 * 120.00281 * 0.02562 * 7 6 2 29 29 H 1.08004 * 119.94374 * 0.02562 * 11 10 8 30 30 H 1.08000 * 120.05827 * 179.72738 * 12 11 10 31 31 H 0.96997 * 120.00204 * 179.97438 * 17 16 14 32 32 H 1.07995 * 120.05693 * 179.70637 * 22 13 12 33 33 H 1.07997 * 119.95013 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2221 1.1074 0.0000 4 6 3.5054 0.9805 -0.0005 5 16 3.9385 -0.6733 0.0066 6 6 2.2366 -1.1296 -0.0005 7 7 1.7349 -2.4320 -0.0006 8 6 2.5819 -3.4804 -0.0016 9 8 3.7835 -3.2915 -0.0021 10 6 2.0516 -4.8573 -0.0023 11 6 2.9336 -5.9453 -0.0028 12 6 2.4484 -7.2188 -0.0096 13 6 1.0568 -7.4401 -0.0048 14 6 0.5497 -8.7565 -0.0068 15 1 -0.4380 -8.9541 -0.3965 16 6 1.3280 -9.8083 0.4970 17 7 2.3495 -9.5529 1.2704 18 14 0.9044 -11.5750 0.0622 19 1 1.6238 -11.9660 -1.1766 20 1 1.3123 -12.4699 1.1749 21 1 -0.5595 -11.6934 -0.1570 22 6 0.1731 -6.3424 -0.0042 23 6 0.6676 -5.0724 -0.0028 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3633 -0.8899 -0.5143 27 1 4.2066 1.8018 -0.0010 28 1 0.7767 -2.5827 -0.0006 29 1 4.0001 -5.7747 -0.0024 30 1 3.1293 -8.0571 -0.0144 31 1 2.8877 -10.2805 1.6192 32 1 -0.8942 -6.5073 -0.0054 33 1 -0.0088 -4.2305 -0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334247503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = 3.192816 kcal Electronic energy + Delta-G solvation = -19130.733102 eV Core-core repulsion = 16053.832414 eV Total energy + Delta-G solvation = -3076.900687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46172 -40.42780 -39.02344 -36.11875 -35.73933 -32.48612 -31.87415 -31.33772 -28.62775 -27.25754 -25.56868 -24.01005 -22.87418 -21.89982 -20.88256 -19.44532 -19.10412 -18.34882 -17.53073 -17.04307 -16.55220 -16.29529 -15.79281 -15.39632 -15.12596 -14.92437 -14.52608 -14.40932 -14.03126 -13.74124 -13.42726 -13.36088 -13.25588 -12.87930 -12.71649 -12.43219 -12.27286 -12.24909 -11.81516 -11.40503 -11.18281 -11.11570 -10.40895 -9.99690 -9.62839 -9.54709 -9.02318 -8.83916 -6.53459 -0.28719 0.21567 0.39054 0.94412 1.12532 1.36753 1.41288 1.53328 1.74011 2.00225 2.08731 2.14538 2.71374 3.44504 3.63888 3.97948 4.10768 4.27054 4.31670 4.37095 4.66378 4.76917 4.93639 4.94170 4.97188 5.10751 5.14265 5.20253 5.39541 5.53563 5.71512 5.83415 5.96447 6.14636 6.30030 6.51071 6.71334 6.78911 6.83247 7.04452 8.10211 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042152 B = 0.003354 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.103049 B = 8345.414548 C = 8925.082007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.008 4.008 3 N -0.470 5.470 4 C -0.034 4.034 5 S 0.200 5.800 6 C -0.011 4.011 7 N -0.621 5.621 8 C 0.562 3.438 9 O -0.565 6.565 10 C -0.296 4.296 11 C -0.042 4.042 12 C -0.203 4.203 13 C 0.103 3.897 14 C -0.462 4.462 15 H 0.095 0.905 16 C 0.034 3.966 17 N -0.797 5.797 18 Si 0.989 3.011 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.250 1.250 22 C -0.243 4.243 23 C -0.036 4.036 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.230 0.770 28 H 0.427 0.573 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.297 0.703 32 H 0.119 0.881 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 10.166 -1.728 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 N -0.184 5.184 4 C -0.332 4.332 5 S 0.450 5.550 6 C -0.230 4.230 7 N -0.268 5.268 8 C 0.358 3.642 9 O -0.447 6.447 10 C -0.300 4.300 11 C -0.061 4.061 12 C -0.222 4.222 13 C 0.099 3.901 14 C -0.489 4.489 15 H 0.113 0.887 16 C -0.186 4.186 17 N -0.420 5.420 18 Si 0.809 3.191 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.174 1.174 22 C -0.262 4.262 23 C -0.055 4.055 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.246 0.754 28 H 0.269 0.731 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.042 10.155 -1.557 10.327 hybrid contribution -0.999 -0.906 0.051 1.349 sum -2.041 9.249 -1.506 9.591 Atomic orbital electron populations 1.20340 0.85230 1.03986 1.03609 1.20538 0.99481 0.84818 1.09480 1.66225 1.06098 1.30581 1.15452 1.28988 0.95567 1.02751 1.05921 1.85070 1.01951 0.99835 1.68137 1.23692 0.98459 0.89409 1.11406 1.42703 1.11364 1.00853 1.71841 1.18765 0.85468 0.85481 0.74439 1.90600 1.16211 1.85181 1.52720 1.18799 0.94452 0.89755 1.27030 1.20523 0.97803 0.92437 0.95387 1.20942 0.96096 0.95227 1.09932 1.18182 0.92097 0.93990 0.85805 1.20242 1.02941 0.92039 1.33681 0.88662 1.27033 0.93215 1.06672 0.91651 1.69788 1.14134 1.37706 1.20331 0.85076 0.80462 0.74541 0.79048 1.18637 1.19196 1.17368 1.20942 0.98935 0.92282 1.14060 1.20698 0.92837 0.97104 0.94825 0.89895 0.89740 0.90168 0.75394 0.73141 0.88579 0.87638 0.89156 0.86266 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.07 71.24 0.72 -0.73 16 2 C -0.01 -0.21 6.77 41.70 0.28 0.07 16 3 N -0.47 -13.01 10.53 -191.01 -2.01 -15.02 16 4 C -0.03 -0.82 12.21 130.67 1.60 0.77 16 5 S 0.20 5.90 20.45 -56.49 -1.16 4.74 16 6 C -0.01 -0.35 7.17 82.60 0.59 0.25 16 7 N -0.62 -19.73 5.34 -308.71 -1.65 -21.38 16 8 C 0.56 22.42 7.73 86.70 0.67 23.09 16 9 O -0.56 -25.01 13.94 -4.15 -0.06 -25.07 16 10 C -0.30 -12.66 5.89 -19.94 -0.12 -12.78 16 11 C -0.04 -2.01 9.52 22.25 0.21 -1.80 16 12 C -0.20 -10.21 8.63 22.47 0.19 -10.02 16 13 C 0.10 5.04 5.57 -21.27 -0.12 4.92 16 14 C -0.46 -22.04 9.04 23.44 0.21 -21.83 16 15 H 0.10 4.22 7.91 -2.91 -0.02 4.20 16 16 C 0.03 1.53 5.14 85.35 0.44 1.97 16 17 N -0.80 -38.07 10.96 21.87 0.24 -37.83 16 18 Si 0.99 33.65 29.60 68.60 2.03 35.68 16 19 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 20 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 21 H -0.25 -8.13 7.11 99.48 0.71 -7.43 16 22 C -0.24 -10.36 9.73 22.47 0.22 -10.14 16 23 C -0.04 -1.37 9.47 22.26 0.21 -1.16 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.35 7.22 -2.38 -0.02 1.34 16 27 H 0.23 3.52 8.06 -2.91 -0.02 3.49 16 28 H 0.43 10.91 5.62 -92.71 -0.52 10.39 16 29 H 0.10 4.58 7.63 -2.91 -0.02 4.56 16 30 H 0.11 5.55 6.16 -2.91 -0.02 5.53 16 31 H 0.30 12.72 8.29 -92.71 -0.77 11.95 16 32 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.13 3.80 6.37 -2.91 -0.02 3.78 16 Total: -1.00 -60.22 300.69 3.15 -57.07 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.65 Total: 29.20 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 5.11 Total: -27.39 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -3.42 Total: -74.23 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.06 Total: -25.07 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.16 Total: 4.74 kcal Total: -60.22 3.15 -57.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334247503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.265 kcal (2) G-P(sol) polarization free energy of solvation -60.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds