Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 119.99640 * 2 1 4 4 H 1.08004 * 119.99987 * 158.99374 * 3 2 1 5 5 C 1.38979 * 120.00395 * 338.98802 * 3 2 1 6 6 N 1.31411 * 119.99816 * 340.49465 * 5 3 2 7 7 Si 1.86795 * 120.00166 * 160.49260 * 5 3 2 8 8 H 1.48502 * 109.47080 * 94.98926 * 7 5 3 9 9 H 1.48503 * 109.47282 * 214.98525 * 7 5 3 10 10 H 1.48497 * 109.47345 * 334.98620 * 7 5 3 11 11 C 1.34772 * 119.99882 * 180.02562 * 2 1 3 12 12 O 1.21666 * 119.99419 * 185.54974 * 11 2 1 13 13 C 1.47210 * 120.00556 * 5.54918 * 11 2 1 14 14 C 1.36311 * 122.56951 * 186.23078 * 13 11 2 15 15 S 1.71007 * 109.00820 * 179.74293 * 14 13 11 16 16 C 1.75975 * 90.64302 * 0.29646 * 15 14 13 17 17 C 1.47901 * 125.21699 * 179.97438 * 16 15 14 18 18 C 1.39530 * 120.14360 * 359.69988 * 17 16 15 19 19 C 1.37966 * 119.86016 * 180.02562 * 18 17 16 20 20 C 1.38348 * 120.14072 * 359.97374 * 19 18 17 21 21 C 1.38346 * 120.28464 * 0.29771 * 20 19 18 22 22 C 1.37971 * 120.13751 * 359.44903 * 21 20 19 23 23 N 1.29779 * 109.56037 * 359.69820 * 16 15 14 24 24 H 1.09003 * 109.46813 * 216.11926 * 1 2 3 25 25 H 1.09002 * 109.47505 * 336.11610 * 1 2 3 26 26 H 1.08999 * 109.47593 * 96.11869 * 1 2 3 27 27 H 0.96999 * 120.00614 * 180.02562 * 6 5 3 28 28 H 1.07999 * 125.49314 * 359.94907 * 14 13 11 29 29 H 1.08006 * 120.06720 * 359.97438 * 18 17 16 30 30 H 1.08003 * 119.93057 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.85880 * 180.02562 * 20 19 18 32 32 H 1.08001 * 119.92903 * 179.72090 * 21 20 19 33 33 H 1.08003 * 120.07133 * 180.28703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1758 1.2171 0.3353 5 6 1.5240 2.3496 -0.4315 6 7 0.4481 2.2773 -1.1826 7 14 2.2125 4.0161 0.0561 8 1 3.1039 4.5177 -1.0205 9 1 1.0952 4.9730 0.2594 10 1 2.9856 3.8827 1.3169 11 6 2.1388 -1.1672 -0.0005 12 8 3.3512 -1.1696 0.1014 13 6 1.4080 -2.4391 -0.1244 14 6 2.0200 -3.6514 -0.0070 15 16 0.8527 -4.8858 -0.2022 16 6 -0.4085 -3.6824 -0.4429 17 6 -1.8348 -3.9807 -0.6961 18 6 -2.2722 -5.3038 -0.7662 19 6 -3.6040 -5.5753 -1.0032 20 6 -4.5051 -4.5391 -1.1707 21 6 -4.0769 -3.2251 -1.1080 22 6 -2.7487 -2.9401 -0.8663 23 7 0.1039 -2.4931 -0.3582 24 1 -0.3633 -0.8302 0.6058 25 1 -0.3634 0.9397 0.4161 26 1 -0.3634 -0.1095 -1.0218 27 1 0.0117 3.0894 -1.4842 28 1 3.0718 -3.8072 0.1823 29 1 -1.5696 -6.1136 -0.6360 30 1 -3.9437 -6.5991 -1.0581 31 1 -5.5467 -4.7569 -1.3557 32 1 -4.7845 -2.4206 -1.2441 33 1 -2.4164 -1.9139 -0.8130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334253935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = 55.027577 kcal Electronic energy + Delta-G solvation = -19619.440231 eV Core-core repulsion = 16544.787267 eV Total energy + Delta-G solvation = -3074.652963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88634 -38.92292 -37.36478 -34.72590 -32.23638 -31.63091 -31.03335 -28.97518 -26.69656 -25.37234 -24.49552 -22.80340 -22.50624 -20.33255 -18.71824 -18.00486 -16.90423 -16.78322 -15.65399 -15.37357 -14.86754 -14.81058 -14.64016 -14.17532 -13.78348 -13.51435 -13.44888 -12.90119 -12.65054 -12.49500 -11.86749 -11.64766 -11.52449 -11.30010 -11.25627 -11.08609 -10.84899 -10.41156 -10.32476 -9.74130 -9.34149 -9.06247 -9.01031 -8.94137 -8.56515 -7.97847 -7.68082 -6.43372 -3.86958 0.41676 1.33397 1.50608 1.53125 1.95031 2.74331 3.17403 3.22338 3.29674 3.80629 4.03976 4.14982 4.35811 4.82025 4.86882 4.92561 5.07547 5.12832 5.22435 5.41174 5.51469 5.70096 5.77954 5.88853 5.98012 6.24621 6.37767 6.45646 6.50897 6.77709 6.86087 7.01745 7.35470 7.49929 7.88159 8.09421 8.45250 9.11468 9.36089 9.96127 10.59827 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.004919 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.645302 B = 5691.001635 C = 7037.461359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.411 5.411 3 C -0.307 4.307 4 H 0.104 0.896 5 C 0.034 3.966 6 N -0.859 5.859 7 Si 0.926 3.074 8 H -0.276 1.276 9 H -0.280 1.280 10 H -0.267 1.267 11 C 0.492 3.508 12 O -0.593 6.593 13 C 0.052 3.948 14 C -0.235 4.235 15 S 0.126 5.874 16 C 0.075 3.925 17 C -0.014 4.014 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.073 4.073 23 N -0.415 5.415 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.271 0.729 28 H 0.184 0.816 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -13.952 0.527 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.125 5.125 3 C -0.435 4.435 4 H 0.122 0.878 5 C -0.172 4.172 6 N -0.496 5.496 7 Si 0.752 3.248 8 H -0.202 1.202 9 H -0.206 1.206 10 H -0.191 1.191 11 C 0.278 3.722 12 O -0.480 6.480 13 C -0.084 4.084 14 C -0.377 4.377 15 S 0.383 5.617 16 C -0.200 4.200 17 C -0.017 4.017 18 C -0.124 4.124 19 C -0.139 4.139 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.095 4.095 23 N -0.130 5.130 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.202 0.798 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.580 -14.378 0.463 17.857 hybrid contribution 0.715 1.641 0.095 1.793 sum -9.865 -12.737 0.558 16.120 Atomic orbital electron populations 1.21706 0.79935 0.99677 1.01272 1.43537 1.06389 1.04367 1.58227 1.19779 0.99181 0.83290 1.41292 0.87799 1.25400 0.96576 1.00300 0.94911 1.70091 1.20250 1.29704 1.29532 0.85925 0.78562 0.80832 0.79494 1.20192 1.20581 1.19094 1.16860 0.86335 0.81833 0.87148 1.90619 1.12960 1.86169 1.58222 1.21025 0.87776 0.96217 1.03368 1.26584 1.05929 0.95009 1.10199 1.83305 1.00057 1.12232 1.66098 1.26026 0.97517 0.90361 1.06109 1.17853 0.87934 0.93817 1.02130 1.21130 0.96416 0.94837 1.00050 1.20973 0.92780 0.99365 1.00786 1.21273 0.99644 0.92869 0.99391 1.21172 0.95689 0.96834 1.00081 1.21433 0.92298 0.99842 0.95890 1.67425 1.10635 1.21789 1.13187 0.93301 0.91762 0.92724 0.91920 0.79841 0.85881 0.85654 0.85912 0.85408 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.86 7.49 59.85 0.45 3.31 16 2 N -0.41 -11.28 3.01 -123.50 -0.37 -11.65 16 3 C -0.31 -8.80 9.29 -15.00 -0.14 -8.94 16 4 H 0.10 3.08 7.39 -52.48 -0.39 2.69 16 5 C 0.03 0.91 4.88 -17.46 -0.09 0.82 16 6 N -0.86 -23.13 11.05 55.50 0.61 -22.52 16 7 Si 0.93 20.59 29.60 -169.99 -5.03 15.56 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.49 13.21 7.59 -12.62 -0.10 13.11 16 12 O -0.59 -17.39 16.36 5.22 0.09 -17.30 16 13 C 0.05 1.14 6.43 -84.58 -0.54 0.60 16 14 C -0.24 -4.34 10.63 30.04 0.32 -4.02 16 15 S 0.13 1.78 22.11 -107.50 -2.38 -0.59 16 16 C 0.08 1.24 7.31 -14.46 -0.11 1.14 16 17 C -0.01 -0.19 5.87 -104.98 -0.62 -0.81 16 18 C -0.10 -1.16 9.60 -39.20 -0.38 -1.54 16 19 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 20 C -0.11 -1.05 10.04 -39.50 -0.40 -1.45 16 21 C -0.12 -1.30 10.03 -39.64 -0.40 -1.69 16 22 C -0.07 -1.00 9.68 -39.20 -0.38 -1.38 16 23 N -0.42 -8.36 6.41 -7.90 -0.05 -8.41 16 24 H 0.05 1.09 5.91 -51.93 -0.31 0.78 16 25 H 0.06 1.60 6.62 -51.93 -0.34 1.26 16 26 H 0.05 1.37 7.85 -51.93 -0.41 0.96 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.18 3.22 8.02 -52.49 -0.42 2.80 16 29 H 0.12 1.17 7.28 -52.48 -0.38 0.79 16 30 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.14 2.09 7.81 -52.48 -0.41 1.68 16 LS Contribution 302.10 15.07 4.55 4.55 Total: -1.00 -32.25 302.10 -8.41 -40.66 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.06 Total: 2.08 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.77 Total: -2.37 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.19 Total: -42.58 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.09 Total: -17.30 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.25 -8.41 -40.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334253935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.685 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds