Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36940 * 119.99640 * 2 1 4 4 H 1.08004 * 119.99987 * 158.99374 * 3 2 1 5 5 C 1.38979 * 120.00395 * 338.98802 * 3 2 1 6 6 N 1.31411 * 119.99816 * 340.49465 * 5 3 2 7 7 Si 1.86795 * 120.00166 * 160.49260 * 5 3 2 8 8 H 1.48502 * 109.47080 * 94.98926 * 7 5 3 9 9 H 1.48503 * 109.47282 * 214.98525 * 7 5 3 10 10 H 1.48497 * 109.47345 * 334.98620 * 7 5 3 11 11 C 1.34772 * 119.99882 * 180.02562 * 2 1 3 12 12 O 1.21666 * 119.99419 * 185.54974 * 11 2 1 13 13 C 1.47210 * 120.00556 * 5.54918 * 11 2 1 14 14 C 1.36311 * 122.56951 * 186.23078 * 13 11 2 15 15 S 1.71007 * 109.00820 * 179.74293 * 14 13 11 16 16 C 1.75975 * 90.64302 * 0.29646 * 15 14 13 17 17 C 1.47901 * 125.21699 * 179.97438 * 16 15 14 18 18 C 1.39530 * 120.14360 * 359.69988 * 17 16 15 19 19 C 1.37966 * 119.86016 * 180.02562 * 18 17 16 20 20 C 1.38348 * 120.14072 * 359.97374 * 19 18 17 21 21 C 1.38346 * 120.28464 * 0.29771 * 20 19 18 22 22 C 1.37971 * 120.13751 * 359.44903 * 21 20 19 23 23 N 1.29779 * 109.56037 * 359.69820 * 16 15 14 24 24 H 1.09003 * 109.46813 * 216.11926 * 1 2 3 25 25 H 1.09002 * 109.47505 * 336.11610 * 1 2 3 26 26 H 1.08999 * 109.47593 * 96.11869 * 1 2 3 27 27 H 0.96999 * 120.00614 * 180.02562 * 6 5 3 28 28 H 1.07999 * 125.49314 * 359.94907 * 14 13 11 29 29 H 1.08006 * 120.06720 * 359.97438 * 18 17 16 30 30 H 1.08003 * 119.93057 * 179.97438 * 19 18 17 31 31 H 1.08002 * 119.85880 * 180.02562 * 20 19 18 32 32 H 1.08001 * 119.92903 * 179.72090 * 21 20 19 33 33 H 1.08003 * 120.07133 * 180.28703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1758 1.2171 0.3353 5 6 1.5240 2.3496 -0.4315 6 7 0.4481 2.2773 -1.1826 7 14 2.2125 4.0161 0.0561 8 1 3.1039 4.5177 -1.0205 9 1 1.0952 4.9730 0.2594 10 1 2.9856 3.8827 1.3169 11 6 2.1388 -1.1672 -0.0005 12 8 3.3512 -1.1696 0.1014 13 6 1.4080 -2.4391 -0.1244 14 6 2.0200 -3.6514 -0.0070 15 16 0.8527 -4.8858 -0.2022 16 6 -0.4085 -3.6824 -0.4429 17 6 -1.8348 -3.9807 -0.6961 18 6 -2.2722 -5.3038 -0.7662 19 6 -3.6040 -5.5753 -1.0032 20 6 -4.5051 -4.5391 -1.1707 21 6 -4.0769 -3.2251 -1.1080 22 6 -2.7487 -2.9401 -0.8663 23 7 0.1039 -2.4931 -0.3582 24 1 -0.3633 -0.8302 0.6058 25 1 -0.3634 0.9397 0.4161 26 1 -0.3634 -0.1095 -1.0218 27 1 0.0117 3.0894 -1.4842 28 1 3.0718 -3.8072 0.1823 29 1 -1.5696 -6.1136 -0.6360 30 1 -3.9437 -6.5991 -1.0581 31 1 -5.5467 -4.7569 -1.3557 32 1 -4.7845 -2.4206 -1.2441 33 1 -2.4164 -1.9139 -0.8130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334253935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = 35.215122 kcal Electronic energy + Delta-G solvation = -19620.299363 eV Core-core repulsion = 16544.787267 eV Total energy + Delta-G solvation = -3075.512096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42631 -40.04635 -39.06730 -36.81561 -33.78136 -33.25720 -31.87713 -30.29099 -28.64161 -27.19142 -26.05568 -24.14966 -23.49525 -21.65048 -20.26562 -19.58322 -18.84620 -17.98305 -17.14990 -16.88542 -16.47552 -16.33799 -15.90814 -15.76249 -15.18857 -15.05298 -14.41619 -14.33944 -14.05690 -13.85658 -13.60581 -13.41692 -13.26049 -12.90392 -12.67940 -12.47263 -12.26600 -12.13392 -11.94473 -11.13104 -10.98365 -10.78133 -10.50379 -10.26836 -9.86901 -9.80215 -9.14760 -8.47161 -6.04281 -0.80034 0.22330 0.33125 0.50049 0.54188 1.24023 1.38493 1.46734 1.54289 2.22619 2.40332 2.80930 2.93677 3.05381 3.13446 3.81529 4.04348 4.12332 4.16270 4.26873 4.35315 4.53211 4.60298 4.74335 4.86223 4.96758 5.05651 5.16305 5.32326 5.37228 5.51102 5.56351 5.61860 5.97409 6.04549 6.31551 6.57404 7.02523 7.30406 7.89213 8.56426 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.019872 B = 0.004919 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.645302 B = 5691.001635 C = 7037.461359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.144 3.856 2 N -0.430 5.430 3 C -0.357 4.357 4 H 0.079 0.921 5 C 0.002 3.998 6 N -0.881 5.881 7 Si 0.997 3.003 8 H -0.271 1.271 9 H -0.261 1.261 10 H -0.268 1.268 11 C 0.481 3.519 12 O -0.633 6.633 13 C 0.015 3.985 14 C -0.245 4.245 15 S 0.252 5.748 16 C 0.068 3.932 17 C -0.045 4.045 18 C -0.101 4.101 19 C -0.114 4.114 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.096 4.096 23 N -0.453 5.453 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.279 0.721 28 H 0.188 0.812 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.143 0.857 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.252 -16.625 0.337 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.144 5.144 3 C -0.485 4.485 4 H 0.097 0.903 5 C -0.202 4.202 6 N -0.517 5.517 7 Si 0.819 3.181 8 H -0.196 1.196 9 H -0.185 1.185 10 H -0.192 1.192 11 C 0.269 3.731 12 O -0.522 6.522 13 C -0.120 4.120 14 C -0.388 4.388 15 S 0.512 5.488 16 C -0.207 4.207 17 C -0.049 4.049 18 C -0.122 4.122 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.117 4.117 23 N -0.168 5.168 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.205 0.795 29 H 0.160 0.840 30 H 0.181 0.819 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.060 -17.081 0.264 21.504 hybrid contribution 1.321 2.168 0.097 2.540 sum -11.740 -14.913 0.361 18.983 Atomic orbital electron populations 1.21470 0.78567 0.99450 1.00437 1.43759 1.07294 1.04508 1.58868 1.19779 0.99094 0.85090 1.44497 0.90287 1.26272 0.96720 1.03343 0.93826 1.70149 1.20968 1.31168 1.29407 0.84895 0.78339 0.75969 0.78917 1.19617 1.18548 1.19248 1.17604 0.86389 0.83439 0.85627 1.90545 1.14744 1.87346 1.59586 1.20435 0.89126 0.95019 1.07465 1.26902 1.07501 0.96088 1.08317 1.82738 0.95596 1.07623 1.62852 1.26585 0.99435 0.90536 1.04172 1.17990 0.86573 0.95368 1.04926 1.21381 0.97894 0.93656 0.99229 1.21441 0.91730 1.01256 0.98755 1.21726 1.01453 0.91835 0.96853 1.21406 0.94622 0.98589 0.99698 1.21379 0.93911 0.98736 0.97720 1.67281 1.09776 1.24334 1.15429 0.91616 0.93121 0.94233 0.91085 0.79493 0.84022 0.81901 0.82432 0.83917 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.46 7.49 127.77 0.96 8.42 16 2 N -0.43 -25.21 3.01 -662.87 -2.00 -27.21 16 3 C -0.36 -21.77 9.29 84.07 0.78 -20.99 16 4 H 0.08 5.07 7.39 -2.91 -0.02 5.04 16 5 C 0.00 0.14 4.88 84.93 0.41 0.55 16 6 N -0.88 -48.99 11.05 21.67 0.24 -48.75 16 7 Si 1.00 43.32 29.60 68.60 2.03 45.35 16 8 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 C 0.48 27.57 7.59 86.60 0.66 28.23 16 12 O -0.63 -39.60 16.36 -4.24 -0.07 -39.67 16 13 C 0.02 0.70 6.43 40.94 0.26 0.96 16 14 C -0.25 -9.05 10.63 67.37 0.72 -8.33 16 15 S 0.25 6.50 22.11 -56.49 -1.25 5.25 16 16 C 0.07 2.19 7.31 87.56 0.64 2.83 16 17 C -0.04 -1.20 5.87 -20.09 -0.12 -1.31 16 18 C -0.10 -1.89 9.60 22.52 0.22 -1.67 16 19 C -0.11 -1.57 10.03 22.23 0.22 -1.34 16 20 C -0.10 -1.42 10.04 22.32 0.22 -1.20 16 21 C -0.13 -2.47 10.03 22.23 0.22 -2.24 16 22 C -0.10 -2.61 9.68 22.52 0.22 -2.39 16 23 N -0.45 -18.85 6.41 -178.89 -1.15 -19.99 16 24 H 0.07 3.13 5.91 -2.39 -0.01 3.12 16 25 H 0.05 2.68 6.62 -2.39 -0.02 2.66 16 26 H 0.04 2.12 7.85 -2.39 -0.02 2.10 16 27 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.19 6.61 8.02 -2.91 -0.02 6.59 16 29 H 0.14 2.01 7.28 -2.91 -0.02 1.99 16 30 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.11 3.59 7.81 -2.91 -0.02 3.57 16 Total: -1.00 -76.34 302.10 4.37 -71.97 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.14 Total: 11.53 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.42 Total: 1.51 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -2.90 Total: -95.95 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.07 Total: -39.67 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.25 Total: 5.25 kcal Total: -76.34 4.37 -71.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334253935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.188 kcal (2) G-P(sol) polarization free energy of solvation -76.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds