Wall clock time and date at job start Tue Mar 31 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33488 * 125.96494 * 2 1 4 4 N 1.31963 * 114.56349 * 180.02562 * 3 2 1 5 5 C 1.29670 * 116.91904 * 359.97438 * 4 3 2 6 6 N 1.38819 * 124.94475 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00312 * 359.97438 * 6 5 4 8 8 O 1.21610 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.47553 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.40048 * 119.90087 * 359.72467 * 9 7 6 11 11 C 1.36293 * 120.10646 * 179.71670 * 10 9 7 12 12 C 1.40907 * 119.89037 * 0.57762 * 11 10 9 13 13 C 1.41071 * 120.10092 * 179.67706 * 12 11 10 14 14 H 1.08000 * 120.00300 * 204.67371 * 13 12 11 15 15 C 1.40232 * 120.00061 * 24.66818 * 13 12 11 16 16 N 1.30640 * 119.99829 * 17.87933 * 15 13 12 17 17 Si 1.86800 * 119.99974 * 197.87542 * 15 13 12 18 18 H 1.48498 * 109.47147 * 60.00004 * 17 15 13 19 19 H 1.48493 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47041 * 300.00050 * 17 15 13 21 21 C 1.40910 * 119.80229 * 359.69821 * 12 11 10 22 22 C 1.36296 * 119.89213 * 359.97438 * 21 12 11 23 23 S 1.70966 * 110.10998 * 359.72427 * 5 4 3 24 24 H 1.08998 * 109.47196 * 90.00359 * 1 2 3 25 25 H 1.08996 * 109.47154 * 329.99394 * 1 2 3 26 26 H 1.09002 * 109.46593 * 210.00319 * 1 2 3 27 27 H 1.07999 * 122.71845 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99779 * 179.97438 * 6 5 4 29 29 H 1.07999 * 119.94783 * 359.97438 * 10 9 7 30 30 H 1.07998 * 120.05616 * 180.27790 * 11 10 9 31 31 H 0.96999 * 120.00157 * 180.02562 * 16 15 13 32 32 H 1.07997 * 120.05654 * 179.97438 * 21 12 11 33 33 H 1.07994 * 119.95010 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2909 1.0804 0.0000 4 7 3.5845 0.8196 -0.0005 5 6 3.9314 -0.4299 -0.0005 6 7 5.2406 -0.8916 -0.0005 7 6 6.2644 -0.0150 -0.0011 8 8 6.0413 1.1804 -0.0021 9 6 7.6559 -0.5059 -0.0005 10 6 7.9104 -1.8830 0.0065 11 6 9.1941 -2.3410 0.0012 12 6 10.2660 -1.4264 0.0010 13 6 11.5964 -1.8956 0.0025 14 1 12.3881 -1.2734 0.3928 15 6 11.8909 -3.1702 -0.5029 16 7 11.0346 -3.7789 -1.2793 17 14 13.5078 -3.9974 -0.0659 18 1 13.5952 -4.1664 1.4068 19 1 13.5764 -5.3276 -0.7222 20 1 14.6373 -3.1554 -0.5354 21 6 10.0051 -0.0417 -0.0001 22 6 8.7181 0.4070 -0.0016 23 16 2.5418 -1.4258 0.0081 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 0.8899 0.5139 26 1 -0.3632 -0.8900 0.5139 27 1 1.8983 2.0865 0.0004 28 1 5.4185 -1.8451 0.0000 29 1 7.0882 -2.5832 0.0119 30 1 9.3894 -3.4032 0.0021 31 1 11.2381 -4.6606 -1.6285 32 1 10.8235 0.6629 0.0001 33 1 8.5171 1.4681 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334279815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:42 Heat of formation + Delta-G solvation = 29.238471 kcal Electronic energy + Delta-G solvation = -18900.290055 eV Core-core repulsion = 15824.518792 eV Total energy + Delta-G solvation = -3075.771263 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.11394 -38.69014 -37.18169 -34.59404 -33.98060 -32.05357 -30.29689 -29.55411 -26.98679 -25.75130 -24.21875 -22.35477 -21.10106 -20.71515 -19.10103 -18.32679 -17.61851 -16.62412 -15.99210 -15.52852 -15.24642 -14.60419 -14.15004 -14.07251 -13.93859 -13.37046 -13.05161 -12.87892 -12.86774 -12.72754 -12.21765 -12.03938 -11.47414 -11.33723 -11.20164 -11.07987 -10.77248 -10.35617 -10.18325 -9.70239 -9.65063 -9.43113 -9.14314 -8.81199 -7.98822 -7.82428 -7.63841 -7.13571 -4.70282 0.86377 1.09775 1.72328 2.11610 2.85383 2.89274 2.92468 2.94633 3.08284 3.30148 3.66869 3.80931 4.46948 4.74644 4.96533 5.09358 5.37521 5.46486 5.67006 5.68466 5.84983 5.89468 6.12390 6.22412 6.57700 6.67729 6.73167 6.92051 7.01335 7.29230 7.38140 7.60913 7.75360 7.77087 7.96831 8.15480 8.29022 8.52515 8.64357 8.84433 9.78023 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.003164 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.598361 B = 8846.333361 C = 9451.316545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.261 4.261 3 C 0.071 3.929 4 N -0.483 5.483 5 C 0.295 3.705 6 N -0.639 5.639 7 C 0.563 3.437 8 O -0.505 6.505 9 C -0.286 4.286 10 C -0.064 4.064 11 C -0.176 4.176 12 C 0.129 3.871 13 C -0.436 4.436 14 H 0.087 0.913 15 C 0.074 3.926 16 N -0.767 5.767 17 Si 0.916 3.084 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.238 4.238 22 C -0.016 4.016 23 S 0.091 5.909 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.173 0.827 28 H 0.419 0.581 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.289 0.711 32 H 0.101 0.899 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.790 -1.761 1.589 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.384 4.384 3 C -0.081 4.081 4 N -0.204 5.204 5 C -0.074 4.074 6 N -0.290 5.290 7 C 0.357 3.643 8 O -0.379 6.379 9 C -0.291 4.291 10 C -0.083 4.083 11 C -0.195 4.195 12 C 0.126 3.874 13 C -0.464 4.464 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.390 5.390 17 Si 0.739 3.261 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.186 1.186 21 C -0.257 4.257 22 C -0.035 4.035 23 S 0.341 5.659 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.190 0.810 28 H 0.257 0.743 29 H 0.106 0.894 30 H 0.140 0.860 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.575 -1.800 1.439 12.784 hybrid contribution 0.499 -0.173 0.009 0.528 sum -12.076 -1.973 1.447 12.321 Atomic orbital electron populations 1.20085 0.86977 1.02872 1.02405 1.25534 1.00936 0.93789 1.18092 1.21607 0.86361 0.99842 1.00246 1.66633 1.16865 1.15956 1.20990 1.23802 0.91302 0.91628 1.00667 1.43468 1.00829 1.11619 1.73064 1.18944 0.84760 0.85484 0.75127 1.90770 1.84589 1.15194 1.47392 1.18699 0.89373 0.93983 1.27091 1.20446 0.96496 0.92843 0.98502 1.20969 0.91082 1.00017 1.07436 1.17805 0.93416 0.91015 0.85161 1.19876 0.94303 0.99256 1.32924 0.89524 1.26140 0.99419 0.96904 0.92402 1.69724 1.35656 1.13846 1.19767 0.86222 0.81048 0.78534 0.80301 1.18374 1.19965 1.18561 1.20718 0.94990 0.95370 1.14644 1.20351 0.91933 0.97496 0.93727 1.83794 0.97627 1.11006 1.73500 0.91139 0.90560 0.91579 0.80957 0.74258 0.89431 0.86022 0.89979 0.88134 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.41 36.00 0.37 -0.14 16 2 C -0.26 -3.16 6.59 -35.97 -0.24 -3.40 16 3 C 0.07 1.03 11.24 -19.16 -0.22 0.81 16 4 N -0.48 -9.10 8.64 -15.16 -0.13 -9.24 16 5 C 0.30 5.10 8.01 -87.49 -0.70 4.40 16 6 N -0.64 -11.43 5.35 -14.04 -0.08 -11.50 16 7 C 0.56 12.29 7.72 -12.46 -0.10 12.19 16 8 O -0.51 -12.53 14.95 5.27 0.08 -12.45 16 9 C -0.29 -6.43 5.89 -104.74 -0.62 -7.05 16 10 C -0.06 -1.36 9.47 -39.60 -0.38 -1.74 16 11 C -0.18 -4.15 8.63 -39.27 -0.34 -4.49 16 12 C 0.13 3.20 5.58 -106.80 -0.60 2.60 16 13 C -0.44 -10.50 9.04 -37.76 -0.34 -10.84 16 14 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 15 C 0.07 1.65 5.13 -17.31 -0.09 1.56 16 16 N -0.77 -17.75 10.95 55.56 0.61 -17.14 16 17 Si 0.92 16.69 29.60 -169.99 -5.03 11.66 16 18 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 19 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 21 C -0.24 -5.61 9.73 -39.27 -0.38 -5.99 16 22 C -0.02 -0.37 9.52 -39.60 -0.38 -0.74 16 23 S 0.09 1.15 23.22 -107.50 -2.50 -1.34 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.42 6.21 6.82 -40.82 -0.28 5.93 16 29 H 0.09 1.54 6.37 -52.49 -0.33 1.21 16 30 H 0.12 2.89 6.16 -52.49 -0.32 2.57 16 31 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 32 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -29.47 304.72 -9.44 -38.91 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -3.00 Total: 9.33 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.99 Total: -12.82 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.40 Total: -37.88 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.50 Total: -1.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.47 -9.44 -38.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334279815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.150 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds