Wall clock time and date at job start Tue Mar 31 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33488 * 125.96494 * 2 1 4 4 N 1.31963 * 114.56349 * 180.02562 * 3 2 1 5 5 C 1.29670 * 116.91904 * 359.97438 * 4 3 2 6 6 N 1.38819 * 124.94475 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00312 * 359.97438 * 6 5 4 8 8 O 1.21610 * 119.99650 * 359.97438 * 7 6 5 9 9 C 1.47553 * 120.00042 * 179.97438 * 7 6 5 10 10 C 1.40048 * 119.90087 * 359.72467 * 9 7 6 11 11 C 1.36293 * 120.10646 * 179.71670 * 10 9 7 12 12 C 1.40907 * 119.89037 * 0.57762 * 11 10 9 13 13 C 1.41071 * 120.10092 * 179.67706 * 12 11 10 14 14 H 1.08000 * 120.00300 * 204.67371 * 13 12 11 15 15 C 1.40232 * 120.00061 * 24.66818 * 13 12 11 16 16 N 1.30640 * 119.99829 * 17.87933 * 15 13 12 17 17 Si 1.86800 * 119.99974 * 197.87542 * 15 13 12 18 18 H 1.48498 * 109.47147 * 60.00004 * 17 15 13 19 19 H 1.48493 * 109.47180 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47041 * 300.00050 * 17 15 13 21 21 C 1.40910 * 119.80229 * 359.69821 * 12 11 10 22 22 C 1.36296 * 119.89213 * 359.97438 * 21 12 11 23 23 S 1.70966 * 110.10998 * 359.72427 * 5 4 3 24 24 H 1.08998 * 109.47196 * 90.00359 * 1 2 3 25 25 H 1.08996 * 109.47154 * 329.99394 * 1 2 3 26 26 H 1.09002 * 109.46593 * 210.00319 * 1 2 3 27 27 H 1.07999 * 122.71845 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99779 * 179.97438 * 6 5 4 29 29 H 1.07999 * 119.94783 * 359.97438 * 10 9 7 30 30 H 1.07998 * 120.05616 * 180.27790 * 11 10 9 31 31 H 0.96999 * 120.00157 * 180.02562 * 16 15 13 32 32 H 1.07997 * 120.05654 * 179.97438 * 21 12 11 33 33 H 1.07994 * 119.95010 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2909 1.0804 0.0000 4 7 3.5845 0.8196 -0.0005 5 6 3.9314 -0.4299 -0.0005 6 7 5.2406 -0.8916 -0.0005 7 6 6.2644 -0.0150 -0.0011 8 8 6.0413 1.1804 -0.0021 9 6 7.6559 -0.5059 -0.0005 10 6 7.9104 -1.8830 0.0065 11 6 9.1941 -2.3410 0.0012 12 6 10.2660 -1.4264 0.0010 13 6 11.5964 -1.8956 0.0025 14 1 12.3881 -1.2734 0.3928 15 6 11.8909 -3.1702 -0.5029 16 7 11.0346 -3.7789 -1.2793 17 14 13.5078 -3.9974 -0.0659 18 1 13.5952 -4.1664 1.4068 19 1 13.5764 -5.3276 -0.7222 20 1 14.6373 -3.1554 -0.5354 21 6 10.0051 -0.0417 -0.0001 22 6 8.7181 0.4070 -0.0016 23 16 2.5418 -1.4258 0.0081 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 0.8899 0.5139 26 1 -0.3632 -0.8900 0.5139 27 1 1.8983 2.0865 0.0004 28 1 5.4185 -1.8451 0.0000 29 1 7.0882 -2.5832 0.0119 30 1 9.3894 -3.4032 0.0021 31 1 11.2381 -4.6606 -1.6285 32 1 10.8235 0.6629 0.0001 33 1 8.5171 1.4681 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334279815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:42 Heat of formation + Delta-G solvation = 12.731401 kcal Electronic energy + Delta-G solvation = -18901.005855 eV Core-core repulsion = 15824.518792 eV Total energy + Delta-G solvation = -3076.487063 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51899 -40.13829 -38.88573 -36.06508 -35.71636 -33.10898 -31.97212 -31.34963 -28.41802 -27.10590 -25.47493 -23.84662 -22.86189 -22.22821 -20.41858 -19.73357 -19.38959 -17.93807 -17.41242 -17.16155 -16.59884 -16.00867 -15.78398 -15.41284 -15.20438 -15.11173 -14.53450 -13.99961 -13.92076 -13.83909 -13.72024 -13.54290 -13.24557 -12.87284 -12.68058 -12.40136 -12.12031 -11.83045 -11.70744 -11.41398 -11.22516 -11.10658 -10.23857 -10.19897 -9.64185 -9.51797 -9.09463 -8.82944 -6.52028 -0.31033 -0.02699 0.42049 0.65854 1.12331 1.38958 1.43714 1.52659 1.82435 2.01137 2.14905 2.20577 2.74829 3.51897 3.64733 4.10766 4.20917 4.24583 4.31922 4.39974 4.81134 4.87814 4.89448 4.96608 4.99174 5.08939 5.19306 5.24357 5.37501 5.54379 5.72955 5.85346 5.95131 6.16816 6.19215 6.49538 6.72749 6.83826 6.90806 7.27377 8.11725 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.003164 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.598361 B = 8846.333361 C = 9451.316545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.235 4.235 3 C 0.035 3.965 4 N -0.527 5.527 5 C 0.242 3.758 6 N -0.631 5.631 7 C 0.567 3.433 8 O -0.545 6.545 9 C -0.295 4.295 10 C -0.053 4.053 11 C -0.195 4.195 12 C 0.103 3.897 13 C -0.466 4.466 14 H 0.088 0.912 15 C 0.038 3.962 16 N -0.792 5.792 17 Si 0.988 3.012 18 H -0.258 1.258 19 H -0.263 1.263 20 H -0.259 1.259 21 C -0.252 4.252 22 C -0.027 4.027 23 S 0.167 5.833 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.191 0.809 28 H 0.431 0.569 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.299 0.701 32 H 0.106 0.894 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.737 -3.567 1.698 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.358 4.358 3 C -0.115 4.115 4 N -0.249 5.249 5 C -0.125 4.125 6 N -0.283 5.283 7 C 0.360 3.640 8 O -0.422 6.422 9 C -0.300 4.300 10 C -0.072 4.072 11 C -0.214 4.214 12 C 0.100 3.900 13 C -0.493 4.493 14 H 0.106 0.894 15 C -0.182 4.182 16 N -0.415 5.415 17 Si 0.808 3.192 18 H -0.182 1.182 19 H -0.187 1.187 20 H -0.183 1.183 21 C -0.271 4.271 22 C -0.047 4.047 23 S 0.417 5.583 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.208 0.792 28 H 0.272 0.728 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.574 -3.632 1.543 15.099 hybrid contribution 0.823 0.396 -0.051 0.915 sum -13.751 -3.235 1.492 14.205 Atomic orbital electron populations 1.20334 0.83608 1.04655 1.04037 1.26255 1.02996 0.93044 1.13473 1.21891 0.85386 1.01580 1.02662 1.66546 1.19566 1.17895 1.20915 1.23952 0.91921 0.92877 1.03762 1.43007 1.00953 1.11530 1.72826 1.18760 0.85273 0.85329 0.74672 1.90737 1.85322 1.16795 1.49361 1.18928 0.89976 0.94449 1.26695 1.20718 0.96953 0.93024 0.96486 1.21020 0.91788 0.99702 1.08928 1.18155 0.94410 0.91589 0.85883 1.20154 0.94266 1.00760 1.34089 0.89397 1.26949 1.02893 0.96711 0.91617 1.69740 1.37391 1.14485 1.19904 0.85139 0.76425 0.77704 0.79937 1.18170 1.18705 1.18313 1.20850 0.95419 0.95497 1.15350 1.20477 0.92316 0.97789 0.94071 1.83486 0.94272 1.09191 1.71352 0.89377 0.88687 0.89900 0.79244 0.72820 0.85625 0.86402 0.88936 0.87543 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.41 71.24 0.74 -0.03 16 2 C -0.24 -4.98 6.59 24.61 0.16 -4.82 16 3 C 0.03 0.96 11.24 83.60 0.94 1.90 16 4 N -0.53 -19.88 8.64 -201.86 -1.74 -21.63 16 5 C 0.24 8.20 8.01 179.25 1.44 9.64 16 6 N -0.63 -22.45 5.35 -316.58 -1.69 -24.14 16 7 C 0.57 25.25 7.72 86.70 0.67 25.92 16 8 O -0.54 -27.99 14.95 -4.06 -0.06 -28.05 16 9 C -0.30 -13.56 5.89 -19.94 -0.12 -13.68 16 10 C -0.05 -2.26 9.47 22.26 0.21 -2.05 16 11 C -0.20 -9.37 8.63 22.47 0.19 -9.18 16 12 C 0.10 5.24 5.58 -21.28 -0.12 5.12 16 13 C -0.47 -22.91 9.04 23.45 0.21 -22.69 16 14 H 0.09 4.13 7.91 -2.91 -0.02 4.10 16 15 C 0.04 1.72 5.13 85.35 0.44 2.16 16 16 N -0.79 -36.62 10.95 21.87 0.24 -36.38 16 17 Si 0.99 33.63 29.60 68.60 2.03 35.66 16 18 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 19 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 20 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 21 C -0.25 -12.37 9.73 22.47 0.22 -12.15 16 22 C -0.03 -1.32 9.52 22.26 0.21 -1.10 16 23 S 0.17 3.77 23.22 -56.49 -1.31 2.46 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.19 4.25 8.06 -2.91 -0.02 4.23 16 28 H 0.43 12.31 6.82 -92.71 -0.63 11.68 16 29 H 0.13 4.26 6.37 -2.91 -0.02 4.24 16 30 H 0.12 5.68 6.16 -2.91 -0.02 5.66 16 31 H 0.30 12.26 8.29 -92.71 -0.77 11.49 16 32 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 33 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -66.35 304.72 3.19 -63.15 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.53 Total: 29.90 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.20 Total: -20.97 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -3.20 Total: -82.15 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.06 Total: -28.05 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.66 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.31 Total: 2.46 kcal Total: -66.35 3.19 -63.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334279815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.885 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds