Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36829 * 120.00242 * 2 1 4 4 H 1.07994 * 120.00084 * 162.55016 * 3 2 1 5 5 C 1.39060 * 119.99594 * 342.55008 * 3 2 1 6 6 N 1.31358 * 120.00526 * 341.74677 * 5 3 2 7 7 Si 1.86800 * 119.99531 * 161.74337 * 5 3 2 8 8 H 1.48503 * 109.47029 * 90.00459 * 7 5 3 9 9 H 1.48503 * 109.46994 * 209.99827 * 7 5 3 10 10 H 1.48501 * 109.47445 * 329.99892 * 7 5 3 11 11 C 1.34779 * 119.99640 * 180.02562 * 2 1 3 12 12 O 1.21674 * 119.99431 * 185.37413 * 11 2 1 13 13 C 1.46995 * 120.00427 * 5.36828 * 11 2 1 14 14 C 1.38191 * 127.87879 * 186.98925 * 13 11 2 15 15 C 1.38571 * 111.24008 * 180.15310 * 14 13 11 16 16 C 1.48417 * 121.23944 * 179.83376 * 15 14 13 17 17 C 1.39331 * 120.11658 * 359.46196 * 16 15 14 18 18 C 1.38021 * 119.87316 * 179.77099 * 17 16 15 19 19 C 1.38322 * 120.12456 * 0.48355 * 18 17 16 20 20 C 1.38322 * 120.23930 * 359.79299 * 19 18 17 21 21 C 1.38019 * 120.11922 * 359.95476 * 20 19 18 22 22 N 1.30337 * 117.52100 * 359.56115 * 15 14 13 23 23 S 1.56255 * 110.39247 * 0.24658 * 22 15 14 24 24 H 1.09005 * 109.46722 * 215.96290 * 1 2 3 25 25 H 1.09001 * 109.47100 * 335.95676 * 1 2 3 26 26 H 1.08999 * 109.47352 * 95.96340 * 1 2 3 27 27 H 0.96995 * 120.00480 * 179.97438 * 6 5 3 28 28 H 1.07997 * 124.38298 * 359.96084 * 14 13 11 29 29 H 1.08001 * 120.06313 * 0.02562 * 17 16 15 30 30 H 1.08004 * 119.93972 * 180.27933 * 18 17 16 31 31 H 1.07994 * 119.87950 * 179.76593 * 19 18 17 32 32 H 1.07998 * 119.93819 * 179.97438 * 20 19 18 33 33 H 1.08004 * 120.06180 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1919 1.2064 0.2805 5 6 1.5019 2.3615 -0.3611 6 7 0.3746 2.3113 -1.0336 7 14 2.2354 4.0135 0.1101 8 1 3.1461 4.4763 -0.9677 9 1 1.1450 5.0044 0.2961 10 1 2.9982 3.8734 1.3766 11 6 2.1388 -1.1673 -0.0005 12 8 3.3516 -1.1696 0.0982 13 6 1.4087 -2.4374 -0.1202 14 6 1.9121 -3.7194 -0.0067 15 6 0.9168 -4.6671 -0.1846 16 6 1.2149 -6.1192 -0.1119 17 6 2.5165 -6.5546 0.1280 18 6 2.7871 -7.9061 0.1993 19 6 1.7709 -8.8279 0.0232 20 6 0.4780 -8.4012 -0.2209 21 6 0.1952 -7.0520 -0.2891 22 7 -0.2917 -4.2357 -0.4127 23 16 -0.3169 -2.6735 -0.4358 24 1 -0.3633 -0.8318 0.6035 25 1 -0.3633 0.9385 0.4187 26 1 -0.3634 -0.1068 -1.0221 27 1 -0.0771 3.1319 -1.2852 28 1 2.9477 -3.9526 0.1916 29 1 3.3114 -5.8358 0.2619 30 1 3.7949 -8.2447 0.3896 31 1 1.9878 -9.8845 0.0760 32 1 -0.3116 -9.1250 -0.3580 33 1 -0.8148 -6.7198 -0.4793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334383834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = 46.988354 kcal Electronic energy + Delta-G solvation = -19260.293239 eV Core-core repulsion = 16185.291668 eV Total energy + Delta-G solvation = -3075.001570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79419 -38.59464 -37.75126 -34.91448 -32.09551 -31.28576 -31.17442 -30.43673 -26.85571 -25.82771 -24.44026 -22.88832 -21.99975 -20.37234 -18.80474 -17.89704 -17.16097 -17.04606 -15.89875 -15.25029 -14.84857 -14.75500 -14.48444 -14.30425 -13.84830 -13.77510 -13.44419 -12.82512 -12.68938 -12.59810 -12.08730 -11.87505 -11.58993 -11.39309 -11.12551 -11.02221 -10.70007 -10.63115 -10.48530 -9.98759 -9.38941 -9.24532 -9.06350 -8.94143 -8.70897 -8.05279 -7.76672 -6.66486 -4.04658 0.69030 1.27796 1.41646 1.83779 2.37661 2.78987 3.05645 3.12389 3.18627 3.89135 3.92991 4.07986 4.47241 4.85191 4.89606 4.91516 4.96758 5.13305 5.35174 5.47513 5.53083 5.63247 5.87255 5.96477 6.00362 6.08960 6.29627 6.43823 6.48448 6.51776 6.54069 6.89401 6.96389 7.09374 7.28613 7.82093 8.18826 8.89203 9.07662 9.69826 10.36315 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042007 B = 0.003718 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.395551 B = 7528.419613 C = 8143.578544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.417 5.417 3 C -0.296 4.296 4 H 0.111 0.889 5 C 0.031 3.969 6 N -0.859 5.859 7 Si 0.932 3.068 8 H -0.273 1.273 9 H -0.279 1.279 10 H -0.265 1.265 11 C 0.495 3.505 12 O -0.581 6.581 13 C -0.213 4.213 14 C -0.148 4.148 15 C 0.125 3.875 16 C -0.015 4.015 17 C -0.101 4.101 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.126 4.126 21 C -0.090 4.090 22 N -0.568 5.568 23 S 0.423 5.577 24 H 0.034 0.966 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.276 0.724 28 H 0.166 0.834 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -13.272 1.713 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.133 5.133 3 C -0.426 4.426 4 H 0.129 0.871 5 C -0.175 4.175 6 N -0.497 5.497 7 Si 0.758 3.242 8 H -0.199 1.199 9 H -0.204 1.204 10 H -0.190 1.190 11 C 0.284 3.716 12 O -0.467 6.467 13 C -0.346 4.346 14 C -0.182 4.182 15 C -0.045 4.045 16 C -0.020 4.020 17 C -0.122 4.122 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.110 4.110 22 N -0.397 5.397 23 S 0.582 5.418 24 H 0.052 0.948 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.184 0.816 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.593 -12.725 1.267 13.588 hybrid contribution 1.796 0.197 0.345 1.839 sum -2.797 -12.529 1.613 12.938 Atomic orbital electron populations 1.21912 0.81102 1.01412 1.01366 1.43588 1.05672 1.04982 1.59025 1.19879 0.97621 0.82411 1.42660 0.87124 1.25461 0.96446 1.00542 0.95023 1.70000 1.17401 1.29887 1.32388 0.85825 0.78715 0.80022 0.79666 1.19903 1.20428 1.18972 1.16492 0.86653 0.81351 0.87138 1.90647 1.12743 1.85877 1.57439 1.27136 1.00296 0.99029 1.08114 1.21654 1.01499 0.89897 1.05147 1.19309 0.87484 0.94541 1.03149 1.18299 0.93702 0.89367 1.00594 1.21304 0.95764 0.96149 0.98943 1.21051 0.99338 0.92783 1.00798 1.21196 0.93168 0.99462 1.00091 1.21088 0.96813 0.95510 1.00942 1.21263 0.99405 0.92321 0.97984 1.71919 1.25942 1.15994 1.25885 1.82175 1.05564 0.95857 1.58233 0.94779 0.88034 0.91706 0.91378 0.81643 0.85272 0.85787 0.86204 0.86034 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.87 7.26 59.85 0.43 2.30 16 2 N -0.42 -10.39 3.02 -123.58 -0.37 -10.77 16 3 C -0.30 -7.82 9.37 -15.02 -0.14 -7.96 16 4 H 0.11 3.04 7.33 -52.49 -0.38 2.66 16 5 C 0.03 0.77 4.96 -17.45 -0.09 0.68 16 6 N -0.86 -20.99 10.74 55.50 0.60 -20.39 16 7 Si 0.93 19.11 29.59 -169.99 -5.03 14.08 16 8 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 9 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 11 C 0.49 12.35 7.60 -12.71 -0.10 12.25 16 12 O -0.58 -16.22 16.60 5.21 0.09 -16.13 16 13 C -0.21 -4.44 6.40 -36.05 -0.23 -4.67 16 14 C -0.15 -2.78 9.63 -39.48 -0.38 -3.16 16 15 C 0.12 2.19 6.58 -84.19 -0.55 1.64 16 16 C -0.02 -0.23 5.88 -104.89 -0.62 -0.85 16 17 C -0.10 -1.33 9.45 -39.25 -0.37 -1.70 16 18 C -0.12 -1.33 10.03 -39.63 -0.40 -1.72 16 19 C -0.12 -1.23 10.04 -39.52 -0.40 -1.63 16 20 C -0.13 -1.39 10.03 -39.63 -0.40 -1.79 16 21 C -0.09 -1.22 9.60 -39.26 -0.38 -1.60 16 22 N -0.57 -10.18 10.50 25.62 0.27 -9.91 16 23 S 0.42 7.49 18.74 -107.50 -2.01 5.47 16 24 H 0.03 0.64 5.17 -30.47 -0.16 0.48 16 25 H 0.10 2.22 6.32 -51.93 -0.33 1.90 16 26 H 0.06 1.37 7.54 -51.93 -0.39 0.97 16 27 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 28 H 0.17 2.88 6.65 -52.49 -0.35 2.53 16 29 H 0.13 1.58 6.46 -52.49 -0.34 1.24 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.78 7.62 -52.48 -0.40 1.38 16 LS Contribution 296.91 15.07 4.47 4.47 Total: -1.00 -29.60 296.91 -8.35 -37.96 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -2.75 Total: 3.41 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -3.61 Total: -8.20 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.49 Total: -41.06 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -2.01 Total: 5.47 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.60 -8.35 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334383834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.948 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds