Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36829 * 120.00242 * 2 1 4 4 H 1.07994 * 120.00084 * 162.55016 * 3 2 1 5 5 C 1.39060 * 119.99594 * 342.55008 * 3 2 1 6 6 N 1.31358 * 120.00526 * 341.74677 * 5 3 2 7 7 Si 1.86800 * 119.99531 * 161.74337 * 5 3 2 8 8 H 1.48503 * 109.47029 * 90.00459 * 7 5 3 9 9 H 1.48503 * 109.46994 * 209.99827 * 7 5 3 10 10 H 1.48501 * 109.47445 * 329.99892 * 7 5 3 11 11 C 1.34779 * 119.99640 * 180.02562 * 2 1 3 12 12 O 1.21674 * 119.99431 * 185.37413 * 11 2 1 13 13 C 1.46995 * 120.00427 * 5.36828 * 11 2 1 14 14 C 1.38191 * 127.87879 * 186.98925 * 13 11 2 15 15 C 1.38571 * 111.24008 * 180.15310 * 14 13 11 16 16 C 1.48417 * 121.23944 * 179.83376 * 15 14 13 17 17 C 1.39331 * 120.11658 * 359.46196 * 16 15 14 18 18 C 1.38021 * 119.87316 * 179.77099 * 17 16 15 19 19 C 1.38322 * 120.12456 * 0.48355 * 18 17 16 20 20 C 1.38322 * 120.23930 * 359.79299 * 19 18 17 21 21 C 1.38019 * 120.11922 * 359.95476 * 20 19 18 22 22 N 1.30337 * 117.52100 * 359.56115 * 15 14 13 23 23 S 1.56255 * 110.39247 * 0.24658 * 22 15 14 24 24 H 1.09005 * 109.46722 * 215.96290 * 1 2 3 25 25 H 1.09001 * 109.47100 * 335.95676 * 1 2 3 26 26 H 1.08999 * 109.47352 * 95.96340 * 1 2 3 27 27 H 0.96995 * 120.00480 * 179.97438 * 6 5 3 28 28 H 1.07997 * 124.38298 * 359.96084 * 14 13 11 29 29 H 1.08001 * 120.06313 * 0.02562 * 17 16 15 30 30 H 1.08004 * 119.93972 * 180.27933 * 18 17 16 31 31 H 1.07994 * 119.87950 * 179.76593 * 19 18 17 32 32 H 1.07998 * 119.93819 * 179.97438 * 20 19 18 33 33 H 1.08004 * 120.06180 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1919 1.2064 0.2805 5 6 1.5019 2.3615 -0.3611 6 7 0.3746 2.3113 -1.0336 7 14 2.2354 4.0135 0.1101 8 1 3.1461 4.4763 -0.9677 9 1 1.1450 5.0044 0.2961 10 1 2.9982 3.8734 1.3766 11 6 2.1388 -1.1673 -0.0005 12 8 3.3516 -1.1696 0.0982 13 6 1.4087 -2.4374 -0.1202 14 6 1.9121 -3.7194 -0.0067 15 6 0.9168 -4.6671 -0.1846 16 6 1.2149 -6.1192 -0.1119 17 6 2.5165 -6.5546 0.1280 18 6 2.7871 -7.9061 0.1993 19 6 1.7709 -8.8279 0.0232 20 6 0.4780 -8.4012 -0.2209 21 6 0.1952 -7.0520 -0.2891 22 7 -0.2917 -4.2357 -0.4127 23 16 -0.3169 -2.6735 -0.4358 24 1 -0.3633 -0.8318 0.6035 25 1 -0.3633 0.9385 0.4187 26 1 -0.3634 -0.1068 -1.0221 27 1 -0.0771 3.1319 -1.2852 28 1 2.9477 -3.9526 0.1916 29 1 3.3114 -5.8358 0.2619 30 1 3.7949 -8.2447 0.3896 31 1 1.9878 -9.8845 0.0760 32 1 -0.3116 -9.1250 -0.3580 33 1 -0.8148 -6.7198 -0.4793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334383834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = 30.007174 kcal Electronic energy + Delta-G solvation = -19261.029598 eV Core-core repulsion = 16185.291668 eV Total energy + Delta-G solvation = -3075.737929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09454 -40.33428 -38.98853 -36.84346 -33.96858 -32.65458 -32.19394 -31.59810 -28.64850 -27.46781 -25.96582 -24.14630 -23.12962 -21.66966 -20.39930 -19.56342 -19.02494 -18.16799 -17.36607 -16.81000 -16.46479 -16.10329 -16.05545 -15.43025 -15.42878 -15.22965 -14.45129 -14.38343 -14.05950 -13.93090 -13.65359 -13.50937 -13.33632 -12.75951 -12.55330 -12.35721 -12.31858 -12.10083 -11.88156 -11.46635 -11.05846 -10.73823 -10.65471 -10.51294 -9.91728 -9.85449 -9.05096 -8.51824 -6.03815 -0.74663 0.08880 0.29493 0.50433 0.92751 1.36697 1.43823 1.51774 1.57071 2.17519 2.22924 2.75973 2.96755 3.00524 3.52547 3.81357 3.97714 4.05008 4.13940 4.27692 4.31760 4.47125 4.58182 4.67749 4.76480 4.80540 5.04695 5.13372 5.15996 5.34149 5.35879 5.56315 5.60213 5.80051 5.91198 6.07226 6.29344 6.97016 7.19068 7.78767 8.50764 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.042007 B = 0.003718 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.395551 B = 7528.419613 C = 8143.578544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.430 5.430 3 C -0.346 4.346 4 H 0.084 0.916 5 C 0.007 3.993 6 N -0.874 5.874 7 Si 0.996 3.004 8 H -0.273 1.273 9 H -0.261 1.261 10 H -0.269 1.269 11 C 0.487 3.513 12 O -0.625 6.625 13 C -0.252 4.252 14 C -0.134 4.134 15 C 0.128 3.872 16 C -0.049 4.049 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.102 4.102 22 N -0.568 5.568 23 S 0.465 5.535 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.284 0.716 28 H 0.174 0.826 29 H 0.130 0.870 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -15.497 1.807 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.145 5.145 3 C -0.474 4.474 4 H 0.102 0.898 5 C -0.198 4.198 6 N -0.510 5.510 7 Si 0.818 3.182 8 H -0.198 1.198 9 H -0.186 1.186 10 H -0.194 1.194 11 C 0.277 3.723 12 O -0.514 6.514 13 C -0.384 4.384 14 C -0.169 4.169 15 C -0.042 4.042 16 C -0.054 4.054 17 C -0.132 4.132 18 C -0.139 4.139 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.122 4.122 22 N -0.397 5.397 23 S 0.625 5.375 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.191 0.809 29 H 0.148 0.852 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.401 -14.930 1.350 15.935 hybrid contribution 1.994 0.566 0.292 2.093 sum -3.407 -14.365 1.642 14.854 Atomic orbital electron populations 1.21892 0.79252 1.02011 1.01718 1.43745 1.06921 1.04690 1.59144 1.19806 0.97383 0.84060 1.46195 0.89789 1.26182 0.96731 1.02904 0.93999 1.70032 1.17865 1.31164 1.31975 0.84905 0.78314 0.76054 0.78913 1.19837 1.18557 1.19391 1.16990 0.86508 0.82585 0.86230 1.90582 1.14751 1.86967 1.59125 1.26841 1.02716 0.97948 1.10941 1.21904 1.02298 0.89432 1.03272 1.19556 0.86716 0.95947 1.01972 1.18373 0.95235 0.87974 1.03772 1.21462 0.94993 0.97576 0.99133 1.21424 1.01087 0.91776 0.99583 1.21666 0.92361 1.01206 0.97475 1.21426 0.98235 0.94763 0.99786 1.21333 0.98738 0.93468 0.98642 1.71942 1.26163 1.15900 1.25718 1.81894 1.02700 0.95655 1.57287 0.92371 0.88859 0.91745 0.90545 0.80904 0.85231 0.82991 0.82639 0.83269 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.16 7.26 127.77 0.93 5.09 16 2 N -0.43 -22.32 3.02 -663.12 -2.00 -24.32 16 3 C -0.35 -19.12 9.37 84.11 0.79 -18.33 16 4 H 0.08 4.95 7.33 -2.91 -0.02 4.93 16 5 C 0.01 0.34 4.96 84.96 0.42 0.76 16 6 N -0.87 -42.91 10.74 21.68 0.23 -42.68 16 7 Si 1.00 39.57 29.59 68.60 2.03 41.60 16 8 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 9 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 10 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 11 C 0.49 25.42 7.60 86.54 0.66 26.07 16 12 O -0.62 -36.86 16.60 -4.27 -0.07 -36.93 16 13 C -0.25 -10.75 6.40 24.56 0.16 -10.59 16 14 C -0.13 -5.08 9.63 22.34 0.22 -4.87 16 15 C 0.13 4.42 6.58 42.16 0.28 4.69 16 16 C -0.05 -1.44 5.88 -20.04 -0.12 -1.55 16 17 C -0.11 -2.73 9.45 22.48 0.21 -2.52 16 18 C -0.12 -2.22 10.03 22.24 0.22 -2.00 16 19 C -0.11 -1.75 10.04 22.31 0.22 -1.52 16 20 C -0.12 -2.33 10.03 22.24 0.22 -2.10 16 21 C -0.10 -2.59 9.60 22.48 0.22 -2.37 16 22 N -0.57 -19.86 10.50 -72.85 -0.76 -20.62 16 23 S 0.46 16.27 18.74 -56.49 -1.06 15.21 16 24 H 0.06 2.18 5.17 -16.03 -0.08 2.10 16 25 H 0.09 4.16 6.32 -2.39 -0.02 4.14 16 26 H 0.06 2.75 7.54 -2.39 -0.02 2.73 16 27 H 0.28 12.80 8.31 -92.71 -0.77 12.03 16 28 H 0.17 6.14 6.65 -2.91 -0.02 6.12 16 29 H 0.13 3.06 6.46 -2.91 -0.02 3.04 16 30 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.12 3.20 7.62 -2.91 -0.02 3.18 16 Total: -1.00 -66.38 296.91 3.88 -62.50 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.08 Total: 14.46 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 4.42 Total: -9.22 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -2.53 Total: -87.62 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.07 Total: -36.93 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: 16.27 SS G_CDS: -1.06 Total: 15.21 kcal Total: -66.38 3.88 -62.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334383834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.509 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds